Rh2BG036100
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010827
Physical Location & Seq
Reverse (-)
2515749 .. 2517486
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG036100.1

Sequence Viewer

Length: 906 bp
ATGCTTCTACGAAGCTCATCGTCGCCGATACTAAACTCATGGCTCCCCCACTCCAAAGACTCGGGTCTCGGGTCGTCCTCCTCGCCCGAACCCGAAATGGTGCCCCAAATCCCCCGAACCTGCGCCATTTCCCTCAGGTCTCCTCTTTCCGTATCTCGTAAAACAAACCAACACCTGATCACTCTCACGCGCGCCCGCTCCGACGCCGATCTCGGCGGCAGCCACCAGCGGAGGCCGCCGTTCGCGAACACGTTGAGCGGGTTCGAGGAGAGAGGAGAGGAGGCTGGTTACGGCGGAGGAGGAGGAGGAGTGAGGAGGACGATGTCGTTGGGGTTGGCGGAGGTGGAGGGGTGTGAGATGGGGACGAGAGAGAATATCGGGTTGTTGAGCGGTTTGGTTGGGGGTGGGGACGGCGGAGGCAAGATCTGCGGAGGAGGTGGCGGCGGATCGGACGGTGGTGACGAATCGGATCGGGGAAGCGCGACCGCCGAGACGCATTATCGGAATATGATCGAGGCTGATCCCGGAAATCCTCTGCTTCTTAGCAACTATGCTAAGTTTCTCAAAGAGGTTGTTGGGAATTTAGAGAAAGCAGAAGAGTACTGTGGGAGAGCAATCTTGGCTAACCCAAACGATGGAAATGTTTTATCCATGTATGCGGATTTGGTATGGCAAATTCACAAGGATGCTGCCAGAGCCGAGACTTATTTCGATCAAGCTGTTAAAGCTTCACCTGATGATTGTTATGTTCAAGCATCATATGCTCATTTCCTTTGGGATTCTGAGGAAGACGAAGATGAGGAGGAGGAGAAGGAGGTGAAAGAAGAAGGCAGCAACCGAGCACCAGCACACAAGTTGGTTCACGGAGTTCCCCCTTCCCCGCCTCCGTTAGCTGCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17

Protein Analysis

301

Amino Acids

31.87

Weight (kDa)

4.89

Isoelectric Point (pI)

65.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 161 - 205 4.2e-06 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32340 AT5G20190
fragaria_vesca FvH4_1g03080 FvH4_1g03080 FvH4_1g03080
malus_domestica MD02G1030000.v1.1 MD15G1171400.v1.1
prunus_persica Prupe.7G244700_v2.0.a1
pyrus_communis pycom02g02500 pycom15g15300
rosa_chinensis RchiOBHm_Chr2g0088211
rosa_laevigata RLG00000015932
rosa_multiflora Rmu_sc0003275.1_g000071
rosa_roxburghii Rroxscaffold_2G00152830
rosa_rugosa Rorug01G0481800
rosa_samantha Rh2AG036900 Rh2BG036100 Rh2CG037200 Rh2DG036600
rosa_wichuraiana Rw2G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 635
AccBSI CCGCTC 3 cut(s) 198, 258, 390
AccII CGCG 4 cut(s) 190, 192, 245, 482
AclWI GGATC 3 cut(s) 454, 477, 515
AcsI RAATTY 2 cut(s) 580, 675
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 1 cut(s) 635
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 1 cut(s) 752
AluBI AGCT 4 cut(s) 15, 719, 728, 893
AluI AGCT 4 cut(s) 15, 719, 728, 893
Alw21I GWGCWC 1 cut(s) 844
Alw26I GTCTC 4 cut(s) 71, 144, 485, 695
AlwI GGATC 3 cut(s) 454, 477, 515
Ama87I CYCGRG 2 cut(s) 61, 68
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 6 cut(s) 219, 689, 831, 893, 896, 899
ApoI RAATTY 2 cut(s) 580, 675
AspLEI GCGC 4 cut(s) 125, 192, 194, 482
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 3 cut(s) 470, 723, 829
AvaI CYCGRG 2 cut(s) 61, 68
AxyI CCTNAGG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 795
Bbv12I GWGCWC 1 cut(s) 844
BbvI GCAGC 6 cut(s) 231, 676, 843, 880, 883, 886
BccI CCATC 2 cut(s) 352, 629
BceAI ACGGC 3 cut(s) 223, 307, 427
BclI TGATCA 1 cut(s) 177
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 4 cut(s) 71, 144, 485, 695
BfuAI ACCTGC 1 cut(s) 128
BglII AGATCT 1 cut(s) 423
BisI GCNGC 9 cut(s) 217, 220, 236, 442, 690, 832, 894, 897, 900
BlsI GCNGC 9 cut(s) 218, 221, 237, 443, 691, 833, 895, 898, 901
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 1 cut(s) 525
BmeT110I CYCGRG 2 cut(s) 61, 68
BmiI GGNNCC 2 cut(s) 44, 102
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 2 cut(s) 676, 764
BoxI GACNNNNGTC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 795
BpuMI CCSGG 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 2 cut(s) 71, 144
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 635
Bse21I CCTNAGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 691
BseLI CCNNNNNNNGG 1 cut(s) 635
BseMII CTCAG 2 cut(s) 148, 774
BsePI GCGCGC 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 6 cut(s) 231, 676, 843, 880, 883, 886
Bsh1236I CGCG 4 cut(s) 190, 192, 245, 482
Bsh1285I CGRYCG 1 cut(s) 486
BshFI GGCC 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 844
BsiHKCI CYCGRG 2 cut(s) 61, 68
BsiSI CCGG 1 cut(s) 525
BslFI GGGAC 2 cut(s) 376, 422
BslI CCNNNNNNNGG 1 cut(s) 635
BsmAI GTCTC 4 cut(s) 71, 144, 485, 695
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 2 cut(s) 376, 422
BsnI GGCC 1 cut(s) 235
Bso31I GGTCTC 2 cut(s) 71, 144
BsoBI CYCGRG 2 cut(s) 61, 68
Bsp1286I GDGCHC 2 cut(s) 105, 844
Bsp143I GATC 8 cut(s) 177, 208, 423, 446, 469, 510, 520, 712
Bsp68I TCGCGA 1 cut(s) 245
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 147, 775
BspFNI CGCG 4 cut(s) 190, 192, 245, 482
BspLI GGNNCC 2 cut(s) 44, 102
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 3 cut(s) 454, 477, 515
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 2 cut(s) 71, 144
BsrBI CCGCTC 3 cut(s) 198, 258, 390
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 8 cut(s) 177, 208, 423, 446, 469, 510, 520, 712
BssNI GRCGYC 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 455, 605
Bst6I CTCTTC 1 cut(s) 591
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 2 cut(s) 426, 761
BstC8I GCNNGC 2 cut(s) 192, 196
BstDEI CTNAG 5 cut(s) 134, 542, 555, 783, 903
BstF5I GGATG 1 cut(s) 691
BstFNI CGCG 4 cut(s) 190, 192, 245, 482
BstHHI GCGC 4 cut(s) 125, 192, 194, 482
BstKTI GATC 8 cut(s) 180, 211, 426, 449, 472, 513, 523, 715
BstMAI GTCTC 4 cut(s) 71, 144, 485, 695
BstMBI GATC 8 cut(s) 177, 208, 423, 446, 469, 510, 520, 712
BstMCI CGRYCG 1 cut(s) 486
BstMWI GCNNNNNNNGC 7 cut(s) 235, 426, 620, 695, 725, 761, 899
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 523
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 4 cut(s) 190, 192, 245, 482
BstV1I GCAGC 6 cut(s) 231, 676, 843, 880, 883, 886
BstV2I GAAGAC 1 cut(s) 795
BstX2I RGATCY 1 cut(s) 423
BstYI RGATCY 1 cut(s) 423
Bsu36I CCTNAGG 1 cut(s) 134
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 691
BtuMI TCGCGA 1 cut(s) 245
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 192, 196
CfoI GCGC 4 cut(s) 125, 192, 194, 482
CseI GACGC 2 cut(s) 212, 502
Csp6I GTAC 1 cut(s) 601
CviAII CATG 2 cut(s) 39, 652
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 5 cut(s) 134, 542, 555, 783, 903
DpnI GATC 8 cut(s) 179, 210, 425, 448, 471, 512, 522, 714
DpnII GATC 8 cut(s) 177, 208, 423, 446, 469, 510, 520, 712
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
EciI GGCGGA 4 cut(s) 309, 353, 429, 459
Eco31I GGTCTC 2 cut(s) 71, 144
Eco81I CCTNAGG 1 cut(s) 134
Eco88I CYCGRG 2 cut(s) 61, 68
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 2 cut(s) 42, 655
FaiI YATR 9 cut(s) 40, 509, 552, 653, 657, 670, 747, 760, 762
FaqI GGGAC 2 cut(s) 376, 422
FatI CATG 2 cut(s) 38, 651
FauI CCCGC 3 cut(s) 203, 251, 888
FauNDI CATATG 1 cut(s) 760
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 9 cut(s) 217, 220, 236, 442, 690, 832, 894, 897, 900
FokI GGATG 1 cut(s) 698
Fsp4HI GCNGC 9 cut(s) 217, 220, 236, 442, 690, 832, 894, 897, 900
GlaI GCGC 4 cut(s) 124, 191, 193, 481
GluI GCNGC 9 cut(s) 217, 220, 236, 442, 690, 832, 894, 897, 900
HaeIII GGCC 1 cut(s) 235
HapII CCGG 1 cut(s) 525
HgaI GACGC 2 cut(s) 212, 502
HhaI GCGC 4 cut(s) 125, 192, 194, 482
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 42, 655
Hin6I GCGC 4 cut(s) 123, 190, 192, 480
HinP1I GCGC 4 cut(s) 123, 190, 192, 480
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 3 cut(s) 59, 464, 779
HpaII CCGG 1 cut(s) 525
HphI GGTGA 3 cut(s) 470, 723, 829
Hpy166II GTNNAC 1 cut(s) 862
Hpy188I TCNGA 5 cut(s) 202, 451, 469, 504, 784
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 862
Hpy99I CGWCG 2 cut(s) 25, 206
HpyAV CCTTC 3 cut(s) 805, 821, 885
HpyCH4III ACNGT 2 cut(s) 455, 605
HpyCH4IV ACGT 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 7 cut(s) 235, 426, 620, 695, 725, 761, 899
HpyF3I CTNAG 5 cut(s) 134, 542, 555, 783, 903
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 42, 655
HspAI GCGC 4 cut(s) 123, 190, 192, 480
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 8 cut(s) 177, 208, 423, 446, 469, 510, 520, 712
LmnI GCTCC 2 cut(s) 48, 203
LpnPI CCDG 9 cut(s) 121, 133, 188, 239, 270, 538, 706, 747, 858
Lsp1109I GCAGC 6 cut(s) 231, 676, 843, 880, 883, 886
LweI GCATC 2 cut(s) 676, 764
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 287, 458
MalI GATC 8 cut(s) 179, 210, 425, 448, 471, 512, 522, 714
MbiI CCGCTC 3 cut(s) 198, 258, 390
MboI GATC 8 cut(s) 177, 208, 423, 446, 469, 510, 520, 712
MboII GAAGA 4 cut(s) 608, 800, 806, 836
MflI RGATCY 1 cut(s) 423
MhlI GDGCHC 2 cut(s) 105, 844
MluCI AATT 2 cut(s) 580, 675
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 225
MseI TTAA 1 cut(s) 723
MslI CAYNNNNRTG 1 cut(s) 684
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 1 cut(s) 525
MvnI CGCG 4 cut(s) 190, 192, 245, 482
MwoI GCNNNNNNNGC 7 cut(s) 235, 426, 620, 695, 725, 761, 899
NciI CCSGG 1 cut(s) 525
NdeI CATATG 1 cut(s) 760
NdeII GATC 8 cut(s) 177, 208, 423, 446, 469, 510, 520, 712
NlaIII CATG 2 cut(s) 42, 655
NlaIV GGNNCC 2 cut(s) 44, 102
NmeAIII GCCGAG 3 cut(s) 192, 514, 724
NmuCI GTSAC 1 cut(s) 458
NruI TCGCGA 1 cut(s) 245
PauI GCGCGC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PfeI GAWTC 2 cut(s) 464, 779
PflFI GACNNNGTC 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 635
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 9 cut(s) 218, 221, 237, 443, 691, 833, 895, 898, 901
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PshAI GACNNNNGTC 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 44, 102
PsuI RGATCY 1 cut(s) 423
PsyI GACNNNGTC 1 cut(s) 322
PteI GCGCGC 1 cut(s) 190
RruI TCGCGA 1 cut(s) 245
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
RseI CAYNNNNRTG 1 cut(s) 684
SaqAI TTAA 1 cut(s) 723
SatI GCNGC 9 cut(s) 217, 220, 236, 442, 690, 832, 894, 897, 900
Sau3AI GATC 8 cut(s) 177, 208, 423, 446, 469, 510, 520, 712
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 525
SduI GDGCHC 2 cut(s) 105, 844
SfaNI GCATC 2 cut(s) 676, 764
SmiMI CAYNNNNRTG 1 cut(s) 684
Sse9I AATT 2 cut(s) 580, 675
StyD4I CCNGG 1 cut(s) 523
TaaI ACNGT 2 cut(s) 455, 605
TaiI ACGT 1 cut(s) 254
TaqI TCGA 3 cut(s) 264, 513, 711
TasI AATT 2 cut(s) 580, 675
TatI WGTACW 1 cut(s) 600
TauI GCSGC 3 cut(s) 219, 238, 444
TfiI GAWTC 2 cut(s) 464, 779
Tru1I TTAA 1 cut(s) 723
Tru9I TTAA 1 cut(s) 723
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 6 cut(s) 219, 689, 831, 893, 896, 899
Tsp45I GTSAC 1 cut(s) 458
TspGWI ACGGA 3 cut(s) 139, 876, 879
Tth111I GACNNNGTC 1 cut(s) 322
Van91I CCANNNNNTGG 1 cut(s) 635
XapI RAATTY 2 cut(s) 580, 675
ZrmI AGTACT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.