Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006738

Physical Location & Seq

Genomic Coordinates Forward (+)

6828904 .. 6831515

Gene Structure 2612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGTAGAGGAAAGATCGAGATAAAGAGGATAGAGAACGCAAACAACAGAGTGGTGACGTTCTCAAAGAGGAGGAATGGATTGGTGAAGAAGGCTAAAGAGATCACAGTTCTTTGTGATGCAAAAGTTGCCCTCATAATCTTTGCAAGTAATGGTAAGATGATTGATTACTGTTGTCCTTCCATGGATCTTGGTGCTATGTTGGACCAATACCAGAAGTTATCTGGCAAGAAACTATGGGATGCTAAGCATGAGAACCTTAGCAATGAGATTGATAGGATCAAGAAAGAGAATGATAGCTTACAACTGGAGCTCAGGCATTTGAAGGGAGAAGATATACAGTCTCTCAACTTGAAAAATCTGATGGCTGTCGAGCACGCCATTGAACATGGCCTCGACAAAGTCCGAGACCACCAGATGGAGATCCTTATATCAAAGAGGAGAAATGAGAAGATGATGGCGGAGGAGCAACGGCAACTCACTTTCCAGCTGCAACAACAGGAGATGGCTATAGCAAGCAACGCAAGAGGAATGATGATGAGAGATCATGATGGGCAGTTTGGATATAGAGTGCAACCGATTCAGCCAAATCTTCAGGAAAAGATTATGTCTTTGGTCATCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

208

Amino Acids

24.05

Weight (kDa)

9.06

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.2e-21	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	81 - 139	5e-15	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20240 AT5G20240
fragaria_vesca	FvH4_2g27860 FvH4_2g27870
prunus_persica	Prupe.1G489400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296721 RchiOBHm_Chr6g0296731
rosa_laevigata	RLG00000011664 RLG00000011665
rosa_multiflora	Rmu_ssc0000192.1_g000004 Rmu_ssc0000192.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171220 Rroxscaffold_7G00171230
rosa_rugosa	Rorug06G0265000 Rorug06G0265100 Rorug06G0265200 Rorug06G0265300 Rorug06G0265400
rosa_samantha	Rh6AG376400 Rh6BG384600 Rh6BG384700 Rh6CG390000 Rh6CG390100 Rh6DG377100
rosa_wichuraiana	Rw6G032900 Rw6G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	418
AciI	CCGC	1 cut(s)	461
AclWI	GGATC	3 cut(s)	195, 287, 418
AcuI	CTGAAG	1 cut(s)	578
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	3 cut(s)	325, 355, 386
AluBI	AGCT	3 cut(s)	300, 313, 490
AluI	AGCT	3 cut(s)	300, 313, 490
Alw21I	GWGCWC	2 cut(s)	315, 378
Alw26I	GTCTC	2 cut(s)	348, 402
AlwI	GGATC	3 cut(s)	195, 287, 418
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	2 cut(s)	67, 97
AvaII	GGWCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	315
Bbv12I	GWGCWC	2 cut(s)	315, 378
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	5 cut(s)	358, 412, 451, 499, 545
BceAI	ACGGC	1 cut(s)	488
BcoDI	GTCTC	2 cut(s)	348, 402
BfmI	CTRYAG	1 cut(s)	510
BisI	GCNGC	1 cut(s)	491
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	492
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmsI	GCATC	2 cut(s)	109, 232
BpmI	CTGGAG	1 cut(s)	329
Bpu10I	CCTNAGC	2 cut(s)	260, 314
Bpu1102I	GCTNAGC	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	271
Bse8I	GATNNNNATC	1 cut(s)	422
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	247
BseJI	GATNNNNATC	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	3 cut(s)	85, 454, 479
BseXI	GCAGC	1 cut(s)	477
BshFI	GGCC	1 cut(s)	393
BshVI	ATCGAT	1 cut(s)	621
BsiHKAI	GWGCWC	2 cut(s)	315, 378
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	2 cut(s)	348, 402
BsnI	GGCC	1 cut(s)	393
Bso31I	GGTCTC	1 cut(s)	402
Bsp1286I	GDGCHC	2 cut(s)	315, 378
Bsp143I	GATC	6 cut(s)	15, 102, 187, 279, 423, 544
Bsp1720I	GCTNAGC	1 cut(s)	246
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	461
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	327
BspDI	ATCGAT	1 cut(s)	621
BspHI	TCATGA	1 cut(s)	547
BspPI	GGATC	3 cut(s)	195, 287, 418
BspTNI	GGTCTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	6 cut(s)	15, 102, 187, 279, 423, 544
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	3 cut(s)	109, 173, 342
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	378, 517
BstDEI	CTNAG	3 cut(s)	246, 260, 314
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	6 cut(s)	18, 105, 190, 282, 426, 547
BstMAI	GTCTC	2 cut(s)	348, 402
BstMBI	GATC	6 cut(s)	15, 102, 187, 279, 423, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 521
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	477
BstX2I	RGATCY	2 cut(s)	187, 423
BstYI	RGATCY	2 cut(s)	187, 423
Bsu15I	ATCGAT	1 cut(s)	621
BsuRI	GGCC	1 cut(s)	393
BsuTUI	ATCGAT	1 cut(s)	621
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	378, 517
CciI	TCATGA	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	621
CviAII	CATG	4 cut(s)	184, 251, 389, 548
CviJI	RGCY	8 cut(s)	95, 300, 313, 368, 393, 490, 509, 586
CviKI_1	RGCY	8 cut(s)	95, 300, 313, 368, 393, 490, 509, 586
DdeI	CTNAG	3 cut(s)	246, 260, 314
DpnI	GATC	6 cut(s)	17, 104, 189, 281, 425, 546
DpnII	GATC	6 cut(s)	15, 102, 187, 279, 423, 544
EciI	GGCGGA	1 cut(s)	476
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	4 cut(s)	187, 254, 392, 551
FatI	CATG	4 cut(s)	183, 250, 388, 547
Fnu4HI	GCNGC	1 cut(s)	491
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	491
GluI	GCNGC	1 cut(s)	491
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	393
Hin1II	CATG	4 cut(s)	187, 254, 392, 551
HinfI	GANTC	1 cut(s)	580
HphI	GGTGA	2 cut(s)	67, 97
Hpy188I	TCNGA	2 cut(s)	363, 407
Hpy188III	TCNNGA	4 cut(s)	19, 283, 548, 596
HpyAV	CCTTC	3 cut(s)	85, 189, 319
HpyCH4III	ACNGT	3 cut(s)	109, 173, 342
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	4 cut(s)	122, 146, 493, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 521
HpyF3I	CTNAG	3 cut(s)	246, 260, 314
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	187, 254, 392, 551
Kzo9I	GATC	6 cut(s)	15, 102, 187, 279, 423, 544
LmnI	GCTCC	2 cut(s)	310, 466
LpnPI	CCDG	8 cut(s)	210, 227, 293, 301, 428, 485, 500, 581
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	2 cut(s)	109, 232
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	6 cut(s)	17, 104, 189, 281, 425, 546
MboI	GATC	6 cut(s)	15, 102, 187, 279, 423, 544
MboII	GAAGA	4 cut(s)	100, 344, 463, 584
MflI	RGATCY	2 cut(s)	187, 423
MhlI	GDGCHC	2 cut(s)	315, 378
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	8 cut(s)	21, 63, 66, 143, 404, 432, 457, 521
MspA1I	CMGCKG	1 cut(s)	490
MwoI	GCNNNNNNNGC	2 cut(s)	128, 521
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	6 cut(s)	15, 102, 187, 279, 423, 544
NlaIII	CATG	4 cut(s)	187, 254, 392, 551
NmuCI	GTSAC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	580
PflFI	GACNNNGTC	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	187, 423
PsyI	GACNNNGTC	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	490
SacI	GAGCTC	1 cut(s)	315
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	6 cut(s)	15, 102, 187, 279, 423, 544
Sau96I	GGNCC	1 cut(s)	205
SduI	GDGCHC	2 cut(s)	315, 378
SetI	ASST	5 cut(s)	62, 261, 302, 315, 492
SfaNI	GCATC	2 cut(s)	109, 232
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	1 cut(s)	205
SsiI	CCGC	1 cut(s)	461
SstI	GAGCTC	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	3 cut(s)	109, 173, 342
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	4 cut(s)	18, 372, 396, 621
TfiI	GAWTC	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	55
Tth111I	GACNNNGTC	1 cut(s)	401
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.