Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006738

Physical Location & Seq

Genomic Coordinates Forward (+)

22010440 .. 22012959

Gene Structure 2520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGGAGGGGTAAGATTGAGATTAAGAGGATTGAAAACTCAAGCAACAGGCAGGTGACCTATTCTAAGAGAAGGAATGGGATCATCAAGAAGGCTAAGGAAATCACTGTTCTCTGTGATGCTAAGGTTTCTCTTATTATCATTGCTAGCTCTGGAAAAATGGTTGATTACTGCAGTGGCCCTCCGGAAACGCTGAAGAAAATCTTGGACAAATACCACTCACAGTCTGGAAAGAGGTTATGGGATGCAAAGCATGAGAACCTCTCCAATGAAGTGGATAGAGTCAAGAAAGACAATGATAGCATGCAAATCGAGCTTCGGCATTTGAAAGGGGAAGACATAACATCTTTGAACCATGTAGACCTGATGACCTTAGAGGAAGCACTTGAAATTGGCCTTGCAAGTATCAGAGACAGAAAGTCAAAGTACGTAGAGGCGGTTATAGAAAATGATAGAGCTCTGGAGGAAGAGCGTAAGCGCCTCACATACCAGCTGTACAAAGTGATGAAAATTGAAGAGAATTTGAGGGACATGAACTACAACACCACCACCCATGGCCAGCAGATACCTTTTGCCCTCCGTGTCCAGCCTAATCAGCCCAATCTCCACGACATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

207

Amino Acids

23.85

Weight (kDa)

9.07

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	7.4e-21	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 165	1.6e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20240 AT5G20240
fragaria_vesca	FvH4_2g27860 FvH4_2g27870
prunus_persica	Prupe.1G489400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296721 RchiOBHm_Chr6g0296731
rosa_laevigata	RLG00000011664 RLG00000011665
rosa_multiflora	Rmu_ssc0000192.1_g000004 Rmu_ssc0000192.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171220 Rroxscaffold_7G00171230
rosa_rugosa	Rorug06G0265000 Rorug06G0265100 Rorug06G0265200 Rorug06G0265300 Rorug06G0265400
rosa_samantha	Rh6AG376400 Rh6BG384600 Rh6BG384700 Rh6CG390000 Rh6CG390100 Rh6DG377100
rosa_wichuraiana	Rw6G032900 Rw6G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	360
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	556
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	428, 497
AgsI	TTSAA	5 cut(s)	35, 328, 352, 389, 515
AhdI	GACNNNNNGTC	1 cut(s)	418
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	4 cut(s)	150, 316, 458, 493
AluI	AGCT	4 cut(s)	150, 316, 458, 493
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	89
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	3 cut(s)	178, 394, 556
ApoI	RAATTY	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	67
AsuNHI	GCTAGC	1 cut(s)	146
BalI	TGGCCA	1 cut(s)	558
BanII	GRGCYC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	460
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	481
BfuAI	ACCTGC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	179
BmsI	GCATC	2 cut(s)	109, 235
BmtI	GCTAGC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	342
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	2 cut(s)	96, 123
BpuEI	CTTGAG	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	553
BsaWI	WCCGGW	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	180, 396, 558
BsiHKAI	GWGCWC	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	542
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	3 cut(s)	180, 396, 558
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp13I	TCCGGA	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	553
BspACI	CCGC	1 cut(s)	437
BspANI	GGCC	3 cut(s)	180, 396, 558
BspEI	TCCGGA	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	89
BspQI	GCTCTTC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	141
BsrGI	TGTACA	1 cut(s)	495
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	553
Bst4CI	ACNGT	2 cut(s)	109, 225
Bst6I	CTCTTC	2 cut(s)	462, 510
BstAUI	TGTACA	1 cut(s)	495
BstBAI	YACGTR	1 cut(s)	430
BstC8I	GCNNGC	3 cut(s)	148, 305, 560
BstDEI	CTNAG	4 cut(s)	66, 96, 123, 373
BstDSI	CCRYGG	1 cut(s)	553
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 595
BstNSI	RCATGY	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	172
BstSNI	TACGTA	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	342
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	180, 396, 558
BtgI	CCRYGG	1 cut(s)	553
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	105, 181
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	148, 305, 560
CfoI	GCGC	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	427, 496
CviAII	CATG	5 cut(s)	254, 304, 356, 532, 554
CviQI	GTAC	2 cut(s)	427, 496
DdeI	CTNAG	4 cut(s)	66, 96, 123, 373
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DriI	GACNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	556
Eam1104I	CTCTTC	2 cut(s)	462, 510
Eam1105I	GACNNNNNGTC	1 cut(s)	418
EarI	CTCTTC	2 cut(s)	462, 510
Ecl136II	GAGCTC	1 cut(s)	458
Eco105I	TACGTA	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	215
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	458
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	553
FaeI	CATG	5 cut(s)	257, 307, 359, 535, 557
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	5 cut(s)	253, 303, 355, 531, 553
FblI	GTMKAC	1 cut(s)	360
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	460
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	479
GsuI	CTGGAG	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	481
HaeIII	GGCC	3 cut(s)	180, 396, 558
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	5 cut(s)	257, 307, 359, 535, 557
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HinfI	GANTC	1 cut(s)	282
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	410
Hpy188III	TCNNGA	6 cut(s)	88, 153, 185, 228, 286, 461
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	66, 85
HpyCH4III	ACNGT	2 cut(s)	109, 225
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	4 cut(s)	174, 248, 307, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 595
HpyF3I	CTNAG	4 cut(s)	66, 96, 123, 373
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	5 cut(s)	257, 307, 359, 535, 557
HspAI	GCGC	1 cut(s)	478
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	81
LguI	GCTCTTC	1 cut(s)	462
LweI	GCATC	2 cut(s)	109, 235
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	4 cut(s)	208, 347, 479, 527
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	558
MluCI	AATT	3 cut(s)	390, 510, 520
MluNI	TGGCCA	1 cut(s)	558
MlyI	GAGTC	1 cut(s)	291
Mox20I	TGGCCA	1 cut(s)	558
MroI	TCCGGA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	558
MseI	TTAA	1 cut(s)	24
Msp20I	TGGCCA	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	313, 595
NcoI	CCATGG	1 cut(s)	553
NdeII	GATC	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	5 cut(s)	257, 307, 359, 535, 557
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	307
PaeI	GCATGC	1 cut(s)	307
PaqCI	CACCTGC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	462
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Ppu21I	YACGTR	1 cut(s)	430
Psp124BI	GAGCTC	1 cut(s)	460
PspEI	GGTNACC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	2 cut(s)	428, 497
RsaNI	GTAC	2 cut(s)	427, 496
SacI	GAGCTC	1 cut(s)	460
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	2 cut(s)	109, 235
SfcI	CTRYAG	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SnaBI	TACGTA	1 cut(s)	430
SphI	GCATGC	1 cut(s)	307
Sse9I	AATT	3 cut(s)	390, 510, 520
SsiI	CCGC	1 cut(s)	437
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	2 cut(s)	109, 225
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	1 cut(s)	312
TasI	AATT	3 cut(s)	390, 510, 520
TatI	WGTACW	1 cut(s)	495
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	2 cut(s)	112, 181
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	285, 521, 548
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	2 cut(s)	112, 181
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.