Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006738

Physical Location & Seq

Genomic Coordinates Reverse (-)

40746065 .. 40748962

Gene Structure 2898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G489400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGGAGGGGCAAGATTGAGATTAAGAGGATTGAGAACTCAAGCAACAGGCAGGTCACTTACTCTAAGAGAAGGAATGGGATCATTAAGAAGGCCAAGGAAATCACTGTTCTATGTGATGCTAAGGTTTCACTTGTCATCTTTGCTAGCTCTGGAAAGATGGTTGAATACTGCAGCCCTTCAGTCACGGTGACTGATATCTTGGACAAGTACCATGGCCAGGCTGGGAAGAAGTTATGGGATGCAAAGCATGAGAACCTCAGCAATGAAGTGGATAGGGTCAAGAAAGACAACGACAGCATGCAAGTCGAGCTCAGGCATCTGAAGGGGGAAGATATCACATCTTTGACCCACAAAGAGCTGATGGCCTTAGAGAATGCACTTGAAAATGGCCTTGCAAGTAACCGGGACAAGCAGTCCAAGTTCGTCGACATGCTCAGAGAAAATGAAAGAGCACTGGAAGAGGAGCATAAGCGCCTCACTTATGAGCTGCACAAACAGGAGATGAAAATTGAAGAGAATGTGAGAGAGTTGGAAAATGGGTATCGTCAGAGGCTGGGGAACTACAACAACCAGATACCGTTTGCCTTTCGTGTTCAGCCTATTCAGCCAAATCTGCAGGAGAGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

211

Amino Acids

24.44

Weight (kDa)

8.92

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20240 AT5G20240
fragaria_vesca	FvH4_2g27860 FvH4_2g27870
prunus_persica	Prupe.1G489400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296721 RchiOBHm_Chr6g0296731
rosa_laevigata	RLG00000011664 RLG00000011665
rosa_multiflora	Rmu_ssc0000192.1_g000004 Rmu_ssc0000192.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171220 Rroxscaffold_7G00171230
rosa_rugosa	Rorug06G0265000 Rorug06G0265100 Rorug06G0265200 Rorug06G0265300 Rorug06G0265400
rosa_samantha	Rh6AG376400 Rh6BG384600 Rh6BG384700 Rh6CG390000 Rh6CG390100 Rh6DG377100
rosa_wichuraiana	Rw6G032900 Rw6G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	429
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	217
AcuI	CTGAAG	2 cut(s)	165, 344
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	167, 386, 515
AhdI	GACNNNNNGTC	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	150, 313, 361, 490
AluI	AGCT	4 cut(s)	150, 313, 361, 490
Alw21I	GWGCWC	2 cut(s)	315, 457
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	556
AoxI	GGCC	4 cut(s)	93, 217, 366, 391
ApeKI	GCWGC	2 cut(s)	174, 490
AspLEI	GCGC	1 cut(s)	477
AsuC2I	CCSGG	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	202
AsuNHI	GCTAGC	1 cut(s)	146
BalI	TGGCCA	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	315
Bbv12I	GWGCWC	2 cut(s)	315, 457
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	186, 477
BccI	CCATC	2 cut(s)	154, 358
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	407
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	2 cut(s)	172, 617
BfoI	RGCGCY	1 cut(s)	478
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	175, 491
BlsI	GCNGC	2 cut(s)	176, 492
Bme1390I	CCNGG	2 cut(s)	221, 407
BmeRI	GACNNNNNGTC	1 cut(s)	415
BmrFI	CCNGG	2 cut(s)	221, 407
BmsI	GCATC	3 cut(s)	109, 232, 328
BmtI	GCTAGC	1 cut(s)	150
Bpu10I	CCTNAGC	3 cut(s)	123, 260, 314
BpuEI	CTTGAG	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	96, 214
BsaXI	ACNNNNNCTCC	1 cut(s)	614
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	96, 214
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	3 cut(s)	274, 328, 451
BseNI	ACTGG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	186, 477
BseYI	CCCAGC	2 cut(s)	224, 556
BsgI	GTGCAG	1 cut(s)	476
BshFI	GGCC	4 cut(s)	95, 219, 368, 393
BsiHKAI	GWGCWC	2 cut(s)	315, 457
BsiSI	CCGG	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	4 cut(s)	95, 219, 368, 393
Bsp1286I	GDGCHC	2 cut(s)	315, 457
Bsp143I	GATC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	214
BspANI	GGCC	4 cut(s)	95, 219, 368, 393
BspCNI	CTCAG	3 cut(s)	273, 327, 450
BspMAI	CTGCAG	2 cut(s)	176, 621
BspMI	ACCTGC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	462
BssECI	CCNNGG	2 cut(s)	96, 214
BssMI	GATC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	96, 214
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	109, 190, 582
Bst6I	CTCTTC	2 cut(s)	456, 510
BstC8I	GCNNGC	2 cut(s)	148, 302
BstDEI	CTNAG	6 cut(s)	66, 123, 260, 314, 370, 437
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	3 cut(s)	310, 607, 616
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	2 cut(s)	304, 436
BstSCI	CCNGG	2 cut(s)	219, 405
BstSFI	CTRYAG	2 cut(s)	172, 617
BstV1I	GCAGC	2 cut(s)	186, 477
BsuRI	GGCC	4 cut(s)	95, 219, 368, 393
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	105, 455
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	148, 302
CaiI	CAGNNNCTG	1 cut(s)	556
CfoI	GCGC	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	4 cut(s)	215, 251, 301, 433
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	6 cut(s)	66, 123, 260, 314, 370, 437
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DriI	GACNNNNNGTC	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	456, 510
Eam1105I	GACNNNNNGTC	1 cut(s)	415
EarI	CTCTTC	2 cut(s)	456, 510
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	96, 214
Eco24I	GRGCYC	1 cut(s)	315
Eco32I	GATATC	2 cut(s)	199, 337
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	165, 344
EcoICRI	GAGCTC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	219
EcoRV	GATATC	2 cut(s)	199, 337
EcoT14I	CCWWGG	2 cut(s)	96, 214
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	2 cut(s)	96, 214
FaeI	CATG	4 cut(s)	218, 254, 304, 436
FaiI	YATR	8 cut(s)	115, 216, 238, 252, 302, 434, 471, 486
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	4 cut(s)	214, 250, 300, 432
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	175, 491
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	175, 491
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	2 cut(s)	175, 491
GsaI	CCCAGC	2 cut(s)	228, 560
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	4 cut(s)	95, 219, 368, 393
HapII	CCGG	1 cut(s)	406
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	4 cut(s)	218, 254, 304, 436
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	406
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	3 cut(s)	324, 440, 552
Hpy188III	TCNNGA	2 cut(s)	153, 283
Hpy8I	GTNNAC	1 cut(s)	430
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	4 cut(s)	66, 85, 189, 319
HpyCH4III	ACNGT	3 cut(s)	109, 190, 582
HpyCH4V	TGCA	7 cut(s)	174, 245, 304, 380, 398, 493, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	310, 607, 616
HpyF3I	CTNAG	6 cut(s)	66, 123, 260, 314, 370, 437
Hsp92II	CATG	4 cut(s)	218, 254, 304, 436
HspAI	GCGC	1 cut(s)	475
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	2 cut(s)	186, 477
LweI	GCATC	3 cut(s)	109, 232, 328
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	4 cut(s)	55, 184, 190, 401
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	4 cut(s)	241, 344, 473, 527
MhlI	GDGCHC	2 cut(s)	315, 457
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	1 cut(s)	510
MluNI	TGGCCA	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	5 cut(s)	21, 269, 457, 488, 546
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	2 cut(s)	24, 87
Msp20I	TGGCCA	1 cut(s)	219
MspI	CCGG	1 cut(s)	406
MspR9I	CCNGG	2 cut(s)	221, 407
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	310, 607, 616
NciI	CCSGG	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	214
NdeII	GATC	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	4 cut(s)	218, 254, 304, 436
NmuCI	GTSAC	3 cut(s)	55, 184, 190
NspI	RCATGY	2 cut(s)	304, 436
PaeI	GCATGC	1 cut(s)	304
PctI	GAATGC	1 cut(s)	382
PkrI	GCNGC	2 cut(s)	176, 492
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	2 cut(s)	224, 556
PspGI	CCWGG	1 cut(s)	219
PstI	CTGCAG	2 cut(s)	176, 621
PstNI	CAGNNNCTG	1 cut(s)	556
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SacI	GAGCTC	1 cut(s)	315
SalI	GTCGAC	1 cut(s)	428
SaqAI	TTAA	2 cut(s)	24, 87
SatI	GCNGC	2 cut(s)	175, 491
Sau3AI	GATC	1 cut(s)	81
ScrFI	CCNGG	2 cut(s)	221, 407
SduI	GDGCHC	2 cut(s)	315, 457
SetI	ASST	7 cut(s)	57, 129, 152, 261, 315, 363, 492
SfaNI	GCATC	3 cut(s)	109, 232, 328
SfcI	CTRYAG	2 cut(s)	172, 617
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SphI	GCATGC	1 cut(s)	304
Sse9I	AATT	1 cut(s)	510
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	219, 405
StyI	CCWWGG	2 cut(s)	96, 214
TaaI	ACNGT	3 cut(s)	109, 190, 582
TaqI	TCGA	2 cut(s)	309, 429
TasI	AATT	1 cut(s)	510
Tru1I	TTAA	2 cut(s)	24, 87
Tru9I	TTAA	2 cut(s)	24, 87
TscAI	CASTG	2 cut(s)	112, 462
TseFI	GTSAC	3 cut(s)	55, 184, 190
TseI	GCWGC	2 cut(s)	174, 490
Tsp45I	GTSAC	3 cut(s)	55, 184, 190
TspDTI	ATGAA	3 cut(s)	282, 462, 521
TspRI	CASTG	2 cut(s)	112, 462
XceI	RCATGY	2 cut(s)	304, 436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.