Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006738

Physical Location & Seq

Genomic Coordinates Reverse (-)

41160319 .. 41166713

Gene Structure 6395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0265100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGAGAGTTCTCCGCCAGTCTACTGGTGATAACCATTTGATTCTGCACTTGGGAATAAATTTTCTGATAGCTGATGATATGCTTGGAATACTTGCTGTCAAGCTAAAGAAAGGCTCGGCTTTGGAATTTGGGCGAAGTTGCATATTACCGGCATGTATGTTGAAGGGAAGAACCATAACTAAAACTCCGCTTGATCAGGAGCGTATTGAAAGACGTTTGAGATATCTCAAAAGCCAAAAAGAGAATCTCGAATCCTCCATTATACATGTTTCTTCTTTCTTCTACAGCCAAAAAAAATTGACCTGCGCCGGTTCTTCTTTCTTCTTTAGTCACATAACCAGATTGAGAGAGTGGATTGTTGCTCCTGCAAATCATTCCTTGCTTTTGATCTGCGAATTTCTATTTGGTTCCTGCAGTCCCCTTTTTTTCCCTTTTCTCGCTCTCCTCACTGTGAGCTCTTTACCTGATTTAGGACTTGGGCTCTGCTATTGCAGTAAGTATCAAAACCAGGGACTCAGACTTCTGTTAAAGTTTGAATCCCTGAGCCATCGTCTCTTTCTTTCTTTGCTCCGCAGAAACATAGAGAGAGATGGGTTGAGACAGACCTGGCTGAGATTGTTATTGATTTTGAACGAATCTGTAGATAATTTGAAGTTGCTGAATTTTCAAGGAGGAGCAACGCATTATCAAATCAAAGGGACTGAGGGATCAACTGAGAAGGAGAGGATAGATTTTATCACATTATGGAGTTCATTAGACACACTTGACCTGATTGGTTATAATCGGCTTTGTGACGAGAAGATTGGGTTGAAAACAAGTAGAACAGGTGTGAGGTTCTGGGCGATTGGTTGGGCTGATTGGGAAAAGGTGAAGTTTTCTAAGGTTGAATTGCTCCCAAAAGGCTTGGAAATCCGGTTTCAATTGCTCGCAATAAACTTGGAAATCTGGTTTCTTTCACAGAAGGATCATGGTCTAAAAGTTGCACAGTTGTTAAATAGGTATGCATGTCTGGAAATCGATGTCAAAAATAGTTCAGACTCGAAAGTTGCATATACTCAAGAGCTTGGGAAAACCAGTTTTTTAAACTTCTTGACGCAGAAGTTTGACAGTTTAAGGATTCTGCTCCAAGCCTTGCCTTTCTGTCAAAAGCTGAAATCAATTGGGAAGCACGAACAAACAAGTGGTGACTCTGTATCCTCTACATCAAAGGGGAAGAAGGTAGATAAGATAACTCGGAGAAAAGGAAGAGGGGACGGAAAGCTGTCATGGTTTCGTTTTGATTGCGCACAACAATCGGTCTGGGTGGCTGTGATCTTAATTTCAGAGCCAATTTGGACTCTGGAGTCTGGAATATCATCTGGGTTTTATCTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

458

Amino Acids

52.25

Weight (kDa)

9.5

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20240 AT5G20240
fragaria_vesca	FvH4_2g27860 FvH4_2g27870
prunus_persica	Prupe.1G489400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296721 RchiOBHm_Chr6g0296731
rosa_laevigata	RLG00000011664 RLG00000011665
rosa_multiflora	Rmu_ssc0000192.1_g000004 Rmu_ssc0000192.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171220 Rroxscaffold_7G00171230
rosa_rugosa	Rorug06G0265000 Rorug06G0265100 Rorug06G0265200 Rorug06G0265300 Rorug06G0265400
rosa_samantha	Rh6AG376400 Rh6BG384600 Rh6BG384700 Rh6CG390000 Rh6CG390100 Rh6DG377100
rosa_wichuraiana	Rw6G032900 Rw6G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
AasI	GACNNNNNNGTC	1 cut(s)	1342
Acc16I	TGCGCA	1 cut(s)	1285
Acc36I	ACCTGC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	20
AciI	CCGC	3 cut(s)	13, 188, 571
AclWI	GGATC	2 cut(s)	715, 972
AcsI	RAATTY	4 cut(s)	58, 125, 395, 661
AfiI	CCNNNNNNNGG	1 cut(s)	470
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	9 cut(s)	163, 209, 536, 631, 652, 668, 811, 887, 920
AjnI	CCWGG	2 cut(s)	507, 605
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	6 cut(s)	71, 103, 456, 1063, 1150, 1261
AluI	AGCT	6 cut(s)	71, 103, 456, 1063, 1150, 1261
Alw21I	GWGCWC	1 cut(s)	458
Alw26I	GTCTC	2 cut(s)	557, 592
AlwI	GGATC	2 cut(s)	715, 972
ApoI	RAATTY	4 cut(s)	58, 125, 395, 661
AspLEI	GCGC	2 cut(s)	308, 1286
AsuHPI	GGTGA	3 cut(s)	38, 880, 1196
BanII	GRGCYC	2 cut(s)	458, 483
Bbv12I	GWGCWC	1 cut(s)	458
BccI	CCATC	2 cut(s)	555, 584
BcgI	CGANNNNNNTGC	2 cut(s)	1275, 1309
BciT130I	CCWGG	2 cut(s)	509, 607
BciVI	GTATCC	1 cut(s)	1204
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	557, 592
BfmI	CTRYAG	3 cut(s)	283, 412, 639
BfuAI	ACCTGC	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	1204
Bme1390I	CCNGG	2 cut(s)	509, 607
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	2 cut(s)	509, 607
BpmI	CTGGAG	1 cut(s)	1361
Bpu10I	CCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	1041
Bsa29I	ATCGAT	1 cut(s)	1017
BsaJI	CCNNGG	1 cut(s)	508
BsaWI	WCCGGW	1 cut(s)	912
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse118I	RCCGGY	2 cut(s)	148, 308
Bse1I	ACTGG	3 cut(s)	16, 28, 1074
BseBI	CCWGG	2 cut(s)	509, 607
BseCI	ATCGAT	1 cut(s)	1017
BseDI	CCNNGG	1 cut(s)	508
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMII	CTCAG	5 cut(s)	529, 533, 602, 693, 705
BseNI	ACTGG	3 cut(s)	16, 28, 1074
BseRI	GAGGAG	2 cut(s)	434, 687
BsgI	GTGCAG	1 cut(s)	29
BshVI	ATCGAT	1 cut(s)	1017
BsiHKAI	GWGCWC	1 cut(s)	458
BsiSI	CCGG	3 cut(s)	149, 309, 913
BslFI	GGGAC	4 cut(s)	402, 525, 712, 1265
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	2 cut(s)	557, 592
BsmBI	CGTCTC	1 cut(s)	557
BsmFI	GGGAC	4 cut(s)	402, 525, 712, 1265
Bsp1286I	GDGCHC	2 cut(s)	458, 483
Bsp143I	GATC	5 cut(s)	193, 387, 707, 964, 1311
BspACI	CCGC	3 cut(s)	13, 188, 571
BspCNI	CTCAG	5 cut(s)	528, 534, 603, 694, 706
BspDI	ATCGAT	1 cut(s)	1017
BspLI	GGNNCC	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	416
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	2 cut(s)	715, 972
BsrFI	RCCGGY	2 cut(s)	148, 308
BsrI	ACTGG	3 cut(s)	16, 28, 1074
BssAI	RCCGGY	2 cut(s)	148, 308
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	5 cut(s)	193, 387, 707, 964, 1311
Bst2UI	CCWGG	2 cut(s)	509, 607
Bst4CI	ACNGT	3 cut(s)	451, 987, 1109
Bst6I	CTCTTC	1 cut(s)	1240
BstC8I	GCNNGC	1 cut(s)	927
BstDEI	CTNAG	6 cut(s)	515, 542, 611, 702, 714, 879
BstENI	CCTNNNNNAGG	1 cut(s)	468
BstHHI	GCGC	2 cut(s)	308, 1286
BstKTI	GATC	5 cut(s)	196, 390, 710, 967, 1314
BstMAI	GTCTC	2 cut(s)	557, 592
BstMBI	GATC	5 cut(s)	193, 387, 707, 964, 1311
BstNI	CCWGG	2 cut(s)	509, 607
BstNSI	RCATGY	3 cut(s)	156, 269, 1008
BstSCI	CCNGG	2 cut(s)	507, 605
BstSFI	CTRYAG	3 cut(s)	283, 412, 639
BstXI	CCANNNNNNTGG	1 cut(s)	23
Bsu15I	ATCGAT	1 cut(s)	1017
BsuI	GTATCC	1 cut(s)	1204
BsuTUI	ATCGAT	1 cut(s)	1017
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	927
CfoI	GCGC	2 cut(s)	308, 1286
Cfr10I	RCCGGY	2 cut(s)	148, 308
ClaI	ATCGAT	1 cut(s)	1017
CseI	GACGC	1 cut(s)	1102
CviAII	CATG	5 cut(s)	153, 266, 968, 1005, 1266
DdeI	CTNAG	6 cut(s)	515, 542, 611, 702, 714, 879
DpnI	GATC	5 cut(s)	195, 389, 709, 966, 1313
DpnII	GATC	5 cut(s)	193, 387, 707, 964, 1311
DraI	TTTAAA	1 cut(s)	1083
DrdI	GACNNNNNNGTC	1 cut(s)	1342
DseDI	GACNNNNNNGTC	1 cut(s)	1342
Eam1104I	CTCTTC	1 cut(s)	1240
EarI	CTCTTC	1 cut(s)	1240
Ecl136II	GAGCTC	1 cut(s)	456
Eco24I	GRGCYC	2 cut(s)	458, 483
Eco32I	GATATC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	456
EcoICRI	GAGCTC	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	507, 605
EcoRV	GATATC	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	1006
EcoT38I	GRGCYC	2 cut(s)	458, 483
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	5 cut(s)	156, 269, 971, 1008, 1269
FaqI	GGGAC	4 cut(s)	402, 525, 712, 1265
FatI	CATG	5 cut(s)	152, 265, 967, 1004, 1265
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	20
FriOI	GRGCYC	2 cut(s)	458, 483
FspI	TGCGCA	1 cut(s)	1285
GlaI	GCGC	2 cut(s)	307, 1285
GsuI	CTGGAG	1 cut(s)	1361
HapII	CCGG	3 cut(s)	149, 309, 913
HgaI	GACGC	1 cut(s)	1102
HhaI	GCGC	2 cut(s)	308, 1286
Hin1II	CATG	5 cut(s)	156, 269, 971, 1008, 1269
Hin6I	GCGC	2 cut(s)	306, 1284
HinP1I	GCGC	2 cut(s)	306, 1284
HpaII	CCGG	3 cut(s)	149, 309, 913
HphI	GGTGA	3 cut(s)	38, 880, 1196
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	5 cut(s)	66, 518, 1036, 1236, 1324
Hpy188III	TCNNGA	7 cut(s)	197, 248, 1010, 1058, 1090, 1340, 1347
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	4 cut(s)	157, 712, 955, 1210
HpyCH4III	ACNGT	3 cut(s)	451, 987, 1109
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	8 cut(s)	46, 141, 368, 414, 492, 983, 1004, 1049
HpyF3I	CTNAG	6 cut(s)	515, 542, 611, 702, 714, 879
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	5 cut(s)	156, 269, 971, 1008, 1269
HspAI	GCGC	2 cut(s)	306, 1284
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	193, 387, 707, 964, 1311
LmnI	GCTCC	6 cut(s)	199, 367, 573, 674, 897, 1128
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	3 cut(s)	329, 791, 1184
MalI	GATC	5 cut(s)	195, 389, 709, 966, 1313
MboI	GATC	5 cut(s)	193, 387, 707, 964, 1311
MboII	GAAGA	8 cut(s)	180, 264, 271, 306, 313, 811, 1225, 1257
MfeI	CAATTG	2 cut(s)	920, 1158
MhlI	GDGCHC	2 cut(s)	458, 483
MlyI	GAGTC	5 cut(s)	507, 1031, 1181, 1330, 1352
MnlI	CCTC	8 cut(s)	265, 455, 665, 697, 717, 825, 1207, 1241
Mph1103I	ATGCAT	1 cut(s)	1006
MseI	TTAA	5 cut(s)	527, 992, 1082, 1112, 1316
MspI	CCGG	3 cut(s)	149, 309, 913
MspR9I	CCNGG	2 cut(s)	509, 607
MunI	CAATTG	2 cut(s)	920, 1158
MvaI	CCWGG	2 cut(s)	509, 607
NdeII	GATC	5 cut(s)	193, 387, 707, 964, 1311
NlaIII	CATG	5 cut(s)	156, 269, 971, 1008, 1269
NlaIV	GGNNCC	1 cut(s)	409
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	3 cut(s)	329, 791, 1184
NsbI	TGCGCA	1 cut(s)	1285
NsiI	ATGCAT	1 cut(s)	1006
NspI	RCATGY	3 cut(s)	156, 269, 1008
PciI	ACATGT	1 cut(s)	265
PfeI	GAWTC	6 cut(s)	40, 244, 251, 536, 635, 1117
PleI	GAGTC	5 cut(s)	507, 1031, 1181, 1330, 1351
PpsI	GAGTC	5 cut(s)	507, 1031, 1181, 1330, 1351
PscI	ACATGT	1 cut(s)	265
PsiI	TTATAA	1 cut(s)	780
Psp124BI	GAGCTC	1 cut(s)	458
Psp6I	CCWGG	2 cut(s)	507, 605
PspGI	CCWGG	2 cut(s)	507, 605
PspN4I	GGNNCC	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	458
SaqAI	TTAA	5 cut(s)	527, 992, 1082, 1112, 1316
Sau3AI	GATC	5 cut(s)	193, 387, 707, 964, 1311
SchI	GAGTC	5 cut(s)	507, 1031, 1181, 1330, 1352
ScrFI	CCNGG	2 cut(s)	509, 607
SduI	GDGCHC	2 cut(s)	458, 483
SfcI	CTRYAG	3 cut(s)	283, 412, 639
SmlI	CTYRAG	1 cut(s)	1056
SmoI	CTYRAG	1 cut(s)	1056
SsiI	CCGC	3 cut(s)	13, 188, 571
SstI	GAGCTC	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	507, 605
TaaI	ACNGT	3 cut(s)	451, 987, 1109
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	3 cut(s)	249, 1017, 1040
TaqII	GACCGA	1 cut(s)	1285
TfiI	GAWTC	6 cut(s)	40, 244, 251, 536, 635, 1117
Tru1I	TTAA	5 cut(s)	527, 992, 1082, 1112, 1316
Tru9I	TTAA	5 cut(s)	527, 992, 1082, 1112, 1316
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	3 cut(s)	329, 791, 1184
Tsp45I	GTSAC	3 cut(s)	329, 791, 1184
TspDTI	ATGAA	1 cut(s)	741
TspGWI	ACGGA	1 cut(s)	1269
TspRI	CASTG	1 cut(s)	454
XagI	CCTNNNNNAGG	1 cut(s)	468
XapI	RAATTY	4 cut(s)	58, 125, 395, 661
XceI	RCATGY	3 cut(s)	156, 269, 1008
XmiI	GTMKAC	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.