Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006738

Physical Location & Seq

Genomic Coordinates Forward (+)

41185899 .. 41190095

Gene Structure 4197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0265400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTGTGGGAGGGCGCGCTGTACTCTCAGAGCCGACGACGTTTCTAGGGCTTGCTACCGCAACCATGGCGCCGTTCGTACGATTAACATGGACCGGTATCGGCCGTCGTATAATGTGTCGCCGGGAGCGGATTTGCCGGTCGTGCGTAGAGGAGATGGTGAAGACGGCGTTGTTCTTCATTGCATGAAATGGGGACTGATTCCGAGTTTCACCAAGAAAACGGAGAAGCCTGATCATTACAGGATGTTCAATGCTCGCTCTGAGTCCATTTGTGAAAAGGCTTCTTTTCGTCGTCTAGTCCCTAAAAACCGCTGCCTAGTTGCTGTAGAAGGATTTTATGAATGGAAAAAAGATGGTTCTAAGAAACAGCCTTACTATGTCCATTTTAAGGATGCTCGGCCTCTTCCGTTTGCTGCTCTTTATGATTCGTGGGAGAACTCTGAAGGTGAGAAACTTTATACCTTCACTATCATTACAACTTCTTCATCTTCAGCTTTGGCGTGGCTCCATGACAGGATGCCAGTTATTTTGGGTGACAAGGAATCTATTGATACATGGCTTAATGATTCTTCATCTTCCAATTTTGACAAGTTACTTAAACCATATGAAGGGTCTGATTTGGTATGGTACCCGGTAACACCAGCAATGGGTAAGGTGTCTTTTAATGGGCCAGAGTGCAGCAATGAGATACAGTTGAAGACAGAGGGCATTAACTCAATCACAAAATTTTTCTCAACAAAGGGAACCAAAAAAGAAGAGCTAAAGCCAAATGATACAAGTTCTCATGACTCATCTGTGAAGACTGATTTTCCAGAAAGCATAAAAAAAGAACCTGAATGCACAGAGGACAGGGTGCAACCATCCTTGACTGTGAAATGTGAAGAAGATTCAAAAAGTAGTGTCTCTACATTCTCTCAAGAGGAGGCATCTAAGGGGCAGACGAAGCGGGACTATGAAGAGTTCTTAGCTGATTCTAAACCGGTTCTTAATAAAGCTGATAAGATTTCTAGTGCTAGTCCAGCAAAGAAGAAGGTCAACCTGAAGACTTCTCAAGATAAGCAACCTACACTATTTTCATACTTTGGGAAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

364

Amino Acids

41.14

Weight (kDa)

8.66

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRAP	PF02586	1 - 219	8.4e-72	SOS response associated peptidase (SRAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20240 AT5G20240
fragaria_vesca	FvH4_2g27860 FvH4_2g27870
prunus_persica	Prupe.1G489400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296721 RchiOBHm_Chr6g0296731
rosa_laevigata	RLG00000011664 RLG00000011665
rosa_multiflora	Rmu_ssc0000192.1_g000004 Rmu_ssc0000192.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171220 Rroxscaffold_7G00171230
rosa_rugosa	Rorug06G0265000 Rorug06G0265100 Rorug06G0265200 Rorug06G0265300 Rorug06G0265400
rosa_samantha	Rh6AG376400 Rh6BG384600 Rh6BG384700 Rh6CG390000 Rh6CG390100 Rh6DG377100
rosa_wichuraiana	Rw6G032900 Rw6G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	627
AccB1I	GGYRCC	2 cut(s)	68, 627
AccBSI	CCGCTC	1 cut(s)	128
AccII	CGCG	1 cut(s)	16
AciI	CCGC	4 cut(s)	58, 128, 310, 946
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	725
AcuI	CTGAAG	3 cut(s)	462, 474, 1061
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	3 cut(s)	22, 79, 629
AfiI	CCNNNNNNNGG	3 cut(s)	388, 608, 647
AgeI	ACCGGT	2 cut(s)	93, 979
AgsI	TTSAA	3 cut(s)	250, 697, 891
AluBI	AGCT	5 cut(s)	494, 760, 968, 995, 1092
AluI	AGCT	5 cut(s)	494, 760, 968, 995, 1092
Alw26I	GTCTC	1 cut(s)	907
AoxI	GGCC	3 cut(s)	101, 398, 668
ApeKI	GCWGC	3 cut(s)	312, 413, 678
ApoI	RAATTY	1 cut(s)	725
AsiGI	ACCGGT	2 cut(s)	93, 979
Asp718I	GGTACC	1 cut(s)	627
AspLEI	GCGC	3 cut(s)	16, 18, 71
AspS9I	GGNCC	2 cut(s)	91, 668
AsuC2I	CCSGG	2 cut(s)	123, 632
AsuHPI	GGTGA	4 cut(s)	170, 202, 458, 545
AvaII	GGWCC	1 cut(s)	91
BanI	GGYRCC	2 cut(s)	68, 627
BbsI	GAAGAC	4 cut(s)	168, 704, 806, 1049
BbvI	GCAGC	3 cut(s)	299, 400, 690
BccI	CCATC	3 cut(s)	149, 347, 868
BceAI	ACGGC	3 cut(s)	56, 88, 181
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	2 cut(s)	123, 632
BcoDI	GTCTC	1 cut(s)	907
BfaI	CTAG	6 cut(s)	45, 296, 317, 1008, 1014, 1093
BfmI	CTRYAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	3 cut(s)	313, 414, 679
BlsI	GCNGC	3 cut(s)	314, 415, 680
Bme1390I	CCNGG	2 cut(s)	123, 632
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	91, 668
BmiI	GGNNCC	4 cut(s)	70, 506, 629, 745
BmrFI	CCNGG	2 cut(s)	123, 632
BmsI	GCATC	3 cut(s)	382, 507, 935
BpiI	GAAGAC	4 cut(s)	168, 704, 806, 1049
BpuEI	CTTGAG	2 cut(s)	900, 1035
BpuMI	CCSGG	2 cut(s)	123, 632
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	2 cut(s)	93, 979
Bsc4I	CCNNNNNNNGG	3 cut(s)	388, 608, 647
Bse118I	RCCGGY	3 cut(s)	93, 136, 979
Bse1I	ACTGG	1 cut(s)	521
Bse3DI	GCAATG	3 cut(s)	178, 651, 688
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	4 cut(s)	249, 397, 522, 860
BseLI	CCNNNNNNNGG	3 cut(s)	388, 608, 647
BseMI	GCAATG	3 cut(s)	178, 651, 688
BseMII	CTCAG	2 cut(s)	40, 252
BseNI	ACTGG	1 cut(s)	521
BsePI	GCGCGC	1 cut(s)	14
BseRI	GAGGAG	2 cut(s)	165, 935
BseX3I	CGGCCG	1 cut(s)	101
BseXI	GCAGC	3 cut(s)	299, 400, 690
BsgI	GTGCAG	1 cut(s)	697
Bsh1236I	CGCG	1 cut(s)	16
Bsh1285I	CGRYCG	2 cut(s)	104, 141
BshFI	GGCC	3 cut(s)	103, 400, 670
BshNI	GGYRCC	2 cut(s)	68, 627
BshTI	ACCGGT	2 cut(s)	93, 979
BsiEI	CGRYCG	2 cut(s)	104, 141
BsiSI	CCGG	5 cut(s)	94, 122, 137, 632, 980
BsiWI	CGTACG	1 cut(s)	77
BslFI	GGGAC	3 cut(s)	207, 284, 962
BslI	CCNNNNNNNGG	3 cut(s)	388, 608, 647
BsmAI	GTCTC	1 cut(s)	907
BsmFI	GGGAC	3 cut(s)	207, 284, 962
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	3 cut(s)	103, 400, 670
Bsp143I	GATC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	4 cut(s)	58, 128, 310, 946
BspANI	GGCC	3 cut(s)	103, 400, 670
BspCNI	CTCAG	2 cut(s)	39, 253
BspFNI	CGCG	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	4 cut(s)	70, 506, 629, 745
BspQI	GCTCTTC	1 cut(s)	750
BspT107I	GGYRCC	2 cut(s)	68, 627
BsrBI	CCGCTC	1 cut(s)	128
BsrDI	GCAATG	3 cut(s)	178, 651, 688
BsrFI	RCCGGY	3 cut(s)	93, 136, 979
BsrI	ACTGG	1 cut(s)	521
BssAI	RCCGGY	3 cut(s)	93, 136, 979
BssECI	CCNNGG	1 cut(s)	64
BssHII	GCGCGC	1 cut(s)	14
BssMI	GATC	1 cut(s)	232
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	693, 871
Bst6I	CTCTTC	3 cut(s)	408, 750, 951
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	3 cut(s)	16, 52, 256
BstDEI	CTNAG	5 cut(s)	26, 261, 360, 930, 964
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	4 cut(s)	249, 397, 522, 860
BstFNI	CGCG	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	3 cut(s)	16, 18, 71
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	907
BstMBI	GATC	1 cut(s)	232
BstMCI	CGRYCG	2 cut(s)	104, 141
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 142, 943, 1019
BstSCI	CCNGG	2 cut(s)	121, 630
BstSFI	CTRYAG	1 cut(s)	324
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	3 cut(s)	299, 400, 690
BstV2I	GAAGAC	4 cut(s)	168, 704, 806, 1049
BstZI	CGGCCG	1 cut(s)	101
BsuRI	GGCC	3 cut(s)	103, 400, 670
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	249, 397, 522, 860
Cac8I	GCNNGC	3 cut(s)	16, 52, 256
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	3 cut(s)	16, 18, 71
Cfr10I	RCCGGY	3 cut(s)	93, 136, 979
Cfr13I	GGNCC	2 cut(s)	91, 668
Csp6I	GTAC	3 cut(s)	21, 78, 628
CspAI	ACCGGT	2 cut(s)	93, 979
CviAII	CATG	6 cut(s)	65, 88, 184, 509, 555, 785
CviQI	GTAC	3 cut(s)	21, 78, 628
DdeI	CTNAG	5 cut(s)	26, 261, 360, 930, 964
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	101
EagI	CGGCCG	1 cut(s)	101
Eam1104I	CTCTTC	3 cut(s)	408, 750, 951
EarI	CTCTTC	3 cut(s)	408, 750, 951
EclXI	CGGCCG	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	101
Eco57I	CTGAAG	3 cut(s)	462, 474, 1061
EcoT14I	CCWWGG	1 cut(s)	64
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	6 cut(s)	68, 91, 187, 512, 558, 788
FaqI	GGGAC	3 cut(s)	207, 284, 962
FatI	CATG	6 cut(s)	64, 87, 183, 508, 554, 784
FauI	CCCGC	1 cut(s)	939
FauNDI	CATATG	1 cut(s)	604
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	313, 414, 679
FokI	GGATG	4 cut(s)	256, 404, 529, 847
Fsp4HI	GCNGC	3 cut(s)	313, 414, 679
FspBI	CTAG	6 cut(s)	45, 296, 317, 1008, 1014, 1093
GlaI	GCGC	3 cut(s)	15, 17, 70
GluI	GCNGC	3 cut(s)	313, 414, 679
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	103, 400, 670
HapII	CCGG	5 cut(s)	94, 122, 137, 632, 980
HhaI	GCGC	3 cut(s)	16, 18, 71
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	6 cut(s)	68, 91, 187, 512, 558, 788
Hin6I	GCGC	3 cut(s)	14, 16, 69
HinP1I	GCGC	3 cut(s)	14, 16, 69
HincII	GTYRAC	1 cut(s)	1036
HindII	GTYRAC	1 cut(s)	1036
HinfI	GANTC	8 cut(s)	199, 263, 425, 542, 566, 788, 887, 971
HpaII	CCGG	5 cut(s)	94, 122, 137, 632, 980
HphI	GGTGA	4 cut(s)	170, 202, 458, 545
Hpy166II	GTNNAC	1 cut(s)	1036
Hpy188I	TCNGA	5 cut(s)	29, 204, 262, 442, 616
Hpy188III	TCNNGA	4 cut(s)	785, 812, 917, 1052
Hpy8I	GTNNAC	1 cut(s)	1036
Hpy99I	CGWCG	4 cut(s)	38, 41, 109, 294
HpyAV	CCTTC	5 cut(s)	323, 437, 472, 602, 1024
HpyCH4III	ACNGT	2 cut(s)	693, 871
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	183, 678, 840, 856
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 142, 943, 1019
HpyF3I	CTNAG	5 cut(s)	26, 261, 360, 930, 964
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	6 cut(s)	68, 91, 187, 512, 558, 788
HspAI	GCGC	3 cut(s)	14, 16, 69
KasI	GGCGCC	1 cut(s)	68
KpnI	GGTACC	1 cut(s)	631
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	2 cut(s)	125, 510
Lsp1109I	GCAGC	3 cut(s)	299, 400, 690
LweI	GCATC	3 cut(s)	382, 507, 935
MaeI	CTAG	6 cut(s)	45, 296, 317, 1008, 1014, 1093
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	3 cut(s)	533, 591, 634
MalI	GATC	1 cut(s)	234
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	1 cut(s)	232
MluCI	AATT	2 cut(s)	580, 725
Mly113I	GGCGCC	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	272, 782
MnlI	CCTC	7 cut(s)	3, 143, 411, 697, 838, 913, 916
MseI	TTAA	7 cut(s)	84, 387, 561, 597, 663, 711, 987
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	5 cut(s)	94, 122, 137, 632, 980
MspR9I	CCNGG	2 cut(s)	123, 632
Mva1269I	GAATGC	1 cut(s)	842
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	4 cut(s)	66, 142, 943, 1019
NarI	GGCGCC	1 cut(s)	69
NciI	CCSGG	2 cut(s)	123, 632
NcoI	CCATGG	1 cut(s)	64
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	6 cut(s)	68, 91, 187, 512, 558, 788
NlaIV	GGNNCC	4 cut(s)	70, 506, 629, 745
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	533
PagI	TCATGA	1 cut(s)	784
PauI	GCGCGC	1 cut(s)	14
PciSI	GCTCTTC	1 cut(s)	750
PctI	GAATGC	1 cut(s)	842
PfeI	GAWTC	6 cut(s)	199, 425, 542, 566, 887, 971
Pfl23II	CGTACG	1 cut(s)	77
PinAI	ACCGGT	2 cut(s)	93, 979
PkrI	GCNGC	3 cut(s)	314, 415, 680
PleI	GAGTC	2 cut(s)	271, 782
PluTI	GGCGCC	1 cut(s)	72
PpsI	GAGTC	2 cut(s)	271, 782
PspLI	CGTACG	1 cut(s)	77
PspN4I	GGNNCC	4 cut(s)	70, 506, 629, 745
PspPI	GGNCC	2 cut(s)	91, 668
PteI	GCGCGC	1 cut(s)	14
RsaI	GTAC	3 cut(s)	22, 79, 629
RsaNI	GTAC	3 cut(s)	21, 78, 628
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	7 cut(s)	84, 387, 561, 597, 663, 711, 987
SatI	GCNGC	3 cut(s)	313, 414, 679
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	2 cut(s)	91, 668
SchI	GAGTC	2 cut(s)	272, 782
ScrFI	CCNGG	2 cut(s)	123, 632
SfaNI	GCATC	3 cut(s)	382, 507, 935
SfcI	CTRYAG	1 cut(s)	324
SfoI	GGCGCC	1 cut(s)	70
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	915, 1050
SmoI	CTYRAG	2 cut(s)	915, 1050
Sse9I	AATT	2 cut(s)	580, 725
SsiI	CCGC	4 cut(s)	58, 128, 310, 946
SspDI	GGCGCC	1 cut(s)	68
SspMI	CTAG	6 cut(s)	45, 296, 317, 1008, 1014, 1093
StyD4I	CCNGG	2 cut(s)	121, 630
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	2 cut(s)	693, 871
TaiI	ACGT	1 cut(s)	42
TasI	AATT	2 cut(s)	580, 725
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	6 cut(s)	199, 425, 542, 566, 887, 971
Tru1I	TTAA	7 cut(s)	84, 387, 561, 597, 663, 711, 987
Tru9I	TTAA	7 cut(s)	84, 387, 561, 597, 663, 711, 987
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	3 cut(s)	312, 413, 678
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	8 cut(s)	167, 200, 354, 474, 561, 621, 969, 1065
TspGWI	ACGGA	2 cut(s)	236, 396
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	725
XspI	CTAG	6 cut(s)	45, 296, 317, 1008, 1014, 1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.