Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006738

Physical Location & Seq

Genomic Coordinates Reverse (-)

11509560 .. 11516249

Gene Structure 6690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011664

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGGAGGGGTAAGATTGAGATTAAGAGGATTGAAAACTCAAGCAACAGGCAGGTGACCTATTCTAAGAGAAAGAATGGGATCATCAAGAAGGCTAAGGAAATCACTGTTCTTTGTGATGCTAAGGTTTCTCTTATTATCATTGCTAGCTCTGGAAAAATGGTTGAATACTGCAGCGGCCCTCAGGAAACGCGGATGAAAATCTTGGACAGATACCACTCACAGTCTGGAAAGAGGTTATGGGACGCCAAGCATGAGAACCTCTGCAATGAAGTGGATAGAGTCAAGAAAGACAATGATGGCATGCAAATTGAGCTTCGGCATTTGAACGGGGAAGACATAACATCTCTGAACCATGAGGACCTGATGGCCTTAGAGGAAGCAATTGAAAATGGCCTTGCAAGTATCAGAGACAGAATGTCGAAGTACATGGATGCGGTTAGAGAAAATAACAGAGCTCTGGAAGACGAGAATAAGCGCCTCGCATACCAGCTGCACAAAATGATGAAATCTGAAGAGAATTTGAGGGACATGAACTACAACAACACCCAGATACCTTTTGCCTTACGTGTCCAGCCTAATCAGCCAAATCTCCACGACATAATTCTCGTCTTCTCTGCACAGAGGGAAGGAGTCTGCGATTCTAGGGTTTGTGGCTCTGTGCGCGGACTGATTTGGTTCAGATACAGTGTGCTATGGGTAGGATTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

238

Amino Acids

27.43

Weight (kDa)

8.89

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	8e-21	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 165	1.6e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20240 AT5G20240
fragaria_vesca	FvH4_2g27860 FvH4_2g27870
prunus_persica	Prupe.1G489400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296721 RchiOBHm_Chr6g0296731
rosa_laevigata	RLG00000011664 RLG00000011665
rosa_multiflora	Rmu_ssc0000192.1_g000004 Rmu_ssc0000192.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171220 Rroxscaffold_7G00171230
rosa_rugosa	Rorug06G0265000 Rorug06G0265100 Rorug06G0265200 Rorug06G0265300 Rorug06G0265400
rosa_samantha	Rh6AG376400 Rh6BG384600 Rh6BG384700 Rh6CG390000 Rh6CG390100 Rh6DG377100
rosa_wichuraiana	Rw6G032900 Rw6G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccII	CGCG	2 cut(s)	193, 666
AciI	CCGC	4 cut(s)	177, 193, 437, 666
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	534
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	4 cut(s)	35, 167, 328, 389
AhdI	GACNNNNNGTC	1 cut(s)	418
AluBI	AGCT	4 cut(s)	150, 316, 458, 493
AluI	AGCT	4 cut(s)	150, 316, 458, 493
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	3 cut(s)	178, 369, 394
ApeKI	GCWGC	2 cut(s)	174, 493
ApoI	RAATTY	1 cut(s)	520
AspLEI	GCGC	2 cut(s)	480, 666
AspS9I	GGNCC	2 cut(s)	179, 361
AsuHPI	GGTGA	1 cut(s)	67
AsuNHI	GCTAGC	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	361
AxyI	CCTNAGG	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	460
BbsI	GAAGAC	3 cut(s)	342, 471, 604
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	2 cut(s)	186, 480
BccI	CCATC	2 cut(s)	293, 361
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	2 cut(s)	147, 645
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	481
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	3 cut(s)	175, 178, 494
BlsI	GCNGC	3 cut(s)	176, 179, 495
Bme18I	GGWCC	1 cut(s)	361
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmgT120I	GGNCC	2 cut(s)	179, 361
BmsI	GCATC	2 cut(s)	109, 424
BmtI	GCTAGC	1 cut(s)	150
BpiI	GAAGAC	3 cut(s)	342, 471, 604
Bpu10I	CCTNAGC	2 cut(s)	96, 123
BpuEI	CTTGAG	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	246
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	2 cut(s)	141, 274
Bse8I	GATNNNNATC	1 cut(s)	200
BseGI	GGATG	2 cut(s)	201, 439
BseJI	GATNNNNATC	1 cut(s)	200
BseMI	GCAATG	2 cut(s)	141, 274
BseMII	CTCAG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	186, 480
BsgI	GTGCAG	2 cut(s)	479, 603
Bsh1236I	CGCG	2 cut(s)	193, 666
BshFI	GGCC	3 cut(s)	180, 371, 396
BsiHKAI	GWGCWC	1 cut(s)	460
BslFI	GGGAC	2 cut(s)	257, 542
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	2 cut(s)	257, 542
BsnI	GGCC	3 cut(s)	180, 371, 396
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	4 cut(s)	177, 193, 437, 666
BspANI	GGCC	3 cut(s)	180, 371, 396
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	2 cut(s)	193, 666
BspMAI	CTGCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	141, 274
BssMI	GATC	1 cut(s)	81
BssNI	GRCGYC	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	109, 225, 689
Bst6I	CTCTTC	1 cut(s)	510
BstACI	GRCGYC	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	148, 305
BstDEI	CTNAG	5 cut(s)	66, 96, 123, 183, 373
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	201, 439
BstFNI	CGCG	2 cut(s)	193, 666
BstH2I	RGCGCY	1 cut(s)	481
BstHHI	GCGC	2 cut(s)	480, 666
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	3 cut(s)	313, 583, 663
BstNSI	RCATGY	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	172
BstUI	CGCG	2 cut(s)	193, 666
BstV1I	GCAGC	2 cut(s)	186, 480
BstV2I	GAAGAC	3 cut(s)	342, 471, 604
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	180, 371, 396
BtsCI	GGATG	2 cut(s)	201, 439
BtsIMutI	CAGTG	2 cut(s)	105, 694
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	148, 305
CfoI	GCGC	2 cut(s)	480, 666
Cfr13I	GGNCC	2 cut(s)	179, 361
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	5 cut(s)	254, 304, 356, 430, 532
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	5 cut(s)	66, 96, 123, 183, 373
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DriI	GACNNNNNGTC	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	510
Eam1105I	GACNNNNNGTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	534
Eco81I	CCTNAGG	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	460
FaeI	CATG	5 cut(s)	257, 307, 359, 433, 535
FaqI	GGGAC	2 cut(s)	257, 542
FatI	CATG	5 cut(s)	253, 303, 355, 429, 531
Fnu4HI	GCNGC	3 cut(s)	175, 178, 494
FokI	GGATG	2 cut(s)	208, 446
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	3 cut(s)	175, 178, 494
FspBI	CTAG	2 cut(s)	147, 645
GlaI	GCGC	2 cut(s)	479, 665
GluI	GCNGC	3 cut(s)	175, 178, 494
HaeII	RGCGCY	1 cut(s)	481
HaeIII	GGCC	3 cut(s)	180, 371, 396
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	2 cut(s)	480, 666
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	5 cut(s)	257, 307, 359, 433, 535
Hin6I	GCGC	2 cut(s)	478, 664
HinP1I	GCGC	2 cut(s)	478, 664
HinfI	GANTC	3 cut(s)	282, 633, 641
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	4 cut(s)	351, 410, 514, 683
Hpy188III	TCNNGA	6 cut(s)	88, 153, 185, 228, 286, 461
HpyAV	CCTTC	2 cut(s)	85, 623
HpyCH4III	ACNGT	3 cut(s)	109, 225, 689
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	6 cut(s)	174, 267, 307, 401, 496, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	313, 583, 663
HpyF3I	CTNAG	5 cut(s)	66, 96, 123, 183, 373
HpySE526I	ACGT	1 cut(s)	568
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	5 cut(s)	257, 307, 359, 433, 535
HspAI	GCGC	2 cut(s)	478, 664
Kzo9I	GATC	1 cut(s)	81
Lsp1109I	GCAGC	2 cut(s)	186, 480
LweI	GCATC	2 cut(s)	109, 424
MaeI	CTAG	2 cut(s)	147, 645
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	4 cut(s)	347, 476, 527, 604
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	4 cut(s)	309, 384, 520, 603
MlyI	GAGTC	2 cut(s)	291, 642
MnlI	CCTC	9 cut(s)	21, 192, 228, 272, 352, 370, 491, 519, 618
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	2 cut(s)	177, 493
MunI	CAATTG	1 cut(s)	384
MvnI	CGCG	2 cut(s)	193, 666
MwoI	GCNNNNNNNGC	3 cut(s)	313, 583, 663
NdeII	GATC	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	5 cut(s)	257, 307, 359, 433, 535
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	307
PaeI	GCATGC	1 cut(s)	307
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	641
PkrI	GCNGC	3 cut(s)	176, 179, 495
PleI	GAGTC	2 cut(s)	290, 641
PpsI	GAGTC	2 cut(s)	290, 641
Ppu21I	YACGTR	1 cut(s)	569
PpuMI	RGGWCCY	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	179, 361
PspPPI	RGGWCCY	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SacI	GAGCTC	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	3 cut(s)	175, 178, 494
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	2 cut(s)	179, 361
SchI	GAGTC	2 cut(s)	291, 642
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	2 cut(s)	109, 424
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SphI	GCATGC	1 cut(s)	307
Sse9I	AATT	4 cut(s)	309, 384, 520, 603
SsiI	CCGC	4 cut(s)	177, 193, 437, 666
SspMI	CTAG	2 cut(s)	147, 645
SstI	GAGCTC	1 cut(s)	460
TaaI	ACNGT	3 cut(s)	109, 225, 689
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	1 cut(s)	422
TasI	AATT	4 cut(s)	309, 384, 520, 603
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	641
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	2 cut(s)	112, 694
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	174, 493
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	212, 285, 521, 548
TspRI	CASTG	2 cut(s)	112, 694
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XspI	CTAG	2 cut(s)	147, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.