Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006738

Physical Location & Seq

Genomic Coordinates Reverse (-)

11560404 .. 11563567

Gene Structure 3164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGGAGGGGTAAGATTGAGATTAAGAGGATTGAGAACTCAACCAACAGGCAGGTGACCTTTGCTAAGAGAAAGAATGGGATCATCAAGAAGGCTAAGGAAATCACTGTTCTTTGTGATGCCAAGGTTTCTCTTATTATTAATGCTAGCTCTGGGAAAATGGTCGAGTACAACAGCGGCTCTAGAGAAACGTTGCTGGAAATCTTAGATAGATACCATTCACAGACTGGGAAGAAGTTGTGGGATGCCAAGCATGAGAACCTCTCCAATGAACTGGATAGAATCAAGAAAGAAAATGACGGCATGCAAGTCCAGCTCAGGCATTTGAAGGGGGAGGACATAACATCTTTGAACCACAGCGAGCTGGGGGACTTGGAGGAAGCACTTGAAAATGGCCTTACTAGTGTCAGAGGCAAGAAGATGCCGTCCAGATGCAAAGAGACAGTCACAAAGCTGCGGAGGAAGAGCATGATCGCCTCAATTATGAGCTGCACAAACAGACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

168

Amino Acids

19.04

Weight (kDa)

9.71

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.2e-20	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	82 - 156	5.1e-16	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20240 AT5G20240
fragaria_vesca	FvH4_2g27860 FvH4_2g27870
prunus_persica	Prupe.1G489400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296721 RchiOBHm_Chr6g0296731
rosa_laevigata	RLG00000011664 RLG00000011665
rosa_multiflora	Rmu_ssc0000192.1_g000004 Rmu_ssc0000192.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171220 Rroxscaffold_7G00171230
rosa_rugosa	Rorug06G0265000 Rorug06G0265100 Rorug06G0265200 Rorug06G0265300 Rorug06G0265400
rosa_samantha	Rh6AG376400 Rh6BG384600 Rh6BG384700 Rh6CG390000 Rh6CG390100 Rh6DG377100
rosa_wichuraiana	Rw6G032900 Rw6G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	2 cut(s)	177, 457
AclI	AACGTT	1 cut(s)	191
AclWI	GGATC	1 cut(s)	89
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	328, 352, 389
AhlI	ACTAGT	1 cut(s)	401
AluBI	AGCT	5 cut(s)	150, 316, 364, 454, 489
AluI	AGCT	5 cut(s)	150, 316, 364, 454, 489
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	454, 489
ArsI	GACNNNNNNTTYG	2 cut(s)	429, 461
AseI	ATTAAT	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	67
AsuNHI	GCTAGC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	441, 476
BceAI	ACGGC	2 cut(s)	316, 409
BcoDI	GTCTC	1 cut(s)	434
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	3 cut(s)	147, 183, 402
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	3 cut(s)	178, 455, 490
BlsI	GCNGC	3 cut(s)	179, 456, 491
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	4 cut(s)	109, 235, 411, 422
BmtI	GCTAGC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
Bpu10I	CCTNAGC	2 cut(s)	96, 317
BsaJI	CCNNGG	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	232, 279
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	2 cut(s)	232, 279
BseXI	GCAGC	2 cut(s)	441, 476
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	475
BshFI	GGCC	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	396
Bsp143I	GATC	2 cut(s)	81, 471
BspACI	CCGC	2 cut(s)	177, 457
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	330
BspMI	ACCTGC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	89
BspQI	GCTCTTC	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	232, 279
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	81, 471
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	3 cut(s)	109, 445, 504
Bst6I	CTCTTC	1 cut(s)	458
BstC8I	GCNNGC	3 cut(s)	148, 305, 362
BstDEI	CTNAG	4 cut(s)	66, 96, 205, 317
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	2 cut(s)	84, 474
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	2 cut(s)	81, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNSI	RCATGY	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	441, 476
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	148, 305, 362
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	3 cut(s)	254, 304, 469
CviJI	RGCY	8 cut(s)	95, 150, 180, 316, 364, 396, 454, 489
CviKI_1	RGCY	8 cut(s)	95, 150, 180, 316, 364, 396, 454, 489
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	4 cut(s)	66, 96, 205, 317
DpnI	GATC	2 cut(s)	83, 473
DpnII	GATC	2 cut(s)	81, 471
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	257, 307, 472
FaiI	YATR	5 cut(s)	255, 305, 341, 470, 485
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	253, 303, 468
Fnu4HI	GCNGC	3 cut(s)	178, 455, 490
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	178, 455, 490
FspBI	CTAG	3 cut(s)	147, 183, 402
GluI	GCNGC	3 cut(s)	178, 455, 490
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	396
Hin1II	CATG	3 cut(s)	257, 307, 472
HinfI	GANTC	1 cut(s)	282
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	410
Hpy188III	TCNNGA	4 cut(s)	88, 183, 286, 429
HpyAV	CCTTC	2 cut(s)	85, 322
HpyCH4III	ACNGT	3 cut(s)	109, 445, 504
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	307, 435, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	4 cut(s)	66, 96, 205, 317
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	3 cut(s)	257, 307, 472
Kzo9I	GATC	2 cut(s)	81, 471
LguI	GCTCTTC	1 cut(s)	458
Lsp1109I	GCAGC	2 cut(s)	441, 476
LweI	GCATC	4 cut(s)	109, 235, 411, 422
MaeI	CTAG	3 cut(s)	147, 183, 402
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	55, 445
MalI	GATC	2 cut(s)	83, 473
MboI	GATC	2 cut(s)	81, 471
MboII	GAAGA	3 cut(s)	244, 430, 475
MluCI	AATT	1 cut(s)	480
MnlI	CCTC	7 cut(s)	21, 272, 328, 370, 404, 453, 487
MseI	TTAA	2 cut(s)	24, 141
MspA1I	CMGCKG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	2 cut(s)	81, 471
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	3 cut(s)	257, 307, 472
NmuCI	GTSAC	2 cut(s)	55, 445
NspI	RCATGY	1 cut(s)	307
PaeI	GCATGC	1 cut(s)	307
PaqCI	CACCTGC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	179, 456, 491
PshBI	ATTAAT	1 cut(s)	141
Psp1406I	AACGTT	1 cut(s)	191
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	364
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	24, 141
SatI	GCNGC	3 cut(s)	178, 455, 490
Sau3AI	GATC	2 cut(s)	81, 471
SfaNI	GCATC	4 cut(s)	109, 235, 411, 422
SpeI	ACTAGT	1 cut(s)	401
SphI	GCATGC	1 cut(s)	307
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	2 cut(s)	177, 457
SspMI	CTAG	3 cut(s)	147, 183, 402
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	3 cut(s)	109, 445, 504
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	480
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	24, 141
Tru9I	TTAA	2 cut(s)	24, 141
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	2 cut(s)	55, 445
TseI	GCWGC	2 cut(s)	454, 489
Tsp45I	GTSAC	2 cut(s)	55, 445
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	112
VspI	ATTAAT	1 cut(s)	141
XbaI	TCTAGA	1 cut(s)	182
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XspI	CTAG	3 cut(s)	147, 183, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.