Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006738

Physical Location & Seq

Genomic Coordinates Forward (+)

22006647 .. 22009508

Gene Structure 2862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAACAGGCAGGTGACCTATTCTAAGAGAAGGAATGGGATCATCAAGAAAGCCAAGGAAATCACTGTTCTTTGTGATGCCAAGGTTTCTCTTATTATCATTAATCCTAGCTCTGGGAAAATGTCTGAGTACTGCAGCGGCTCTCAAGAAACGTTGCTGGAAATCTTAAGCAGATACCATTCACAAACTGGGTTGAGGTTGTGGGATACCAAGCATGAGAACGTTTCCAATGAATTGGATAGAATCAAGAAGGAAAATGACAACATGCAAGTCCATCTCAGGCATCTTAACGGGGAGGACATAACATCCATGAACCACATTGAGCTGGGGGACTTGGAGAAATCACTCGAGAACGGCCTTACTGCTGTCAGAGACAAGAAGACAGAGGTCGCCCAGAGGCATAGAGACAGTTACAAAGCTGTGGAGGCCGAGCATGATCGCCTCAATTATGAGCTGCACAAACAGACGATAAAAACTGAAGACAATAACTTGAGGGACATAGAGTATCAACAGAGGATGTCCCATATGTCATTCTTCAGGCTCCAGCCTATTCAGCCTAATCTCCACCACGACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

207

Amino Acids

24.06

Weight (kDa)

8.37

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 58	1.6e-20	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 169	1.7e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20240 AT5G20240
fragaria_vesca	FvH4_2g27860 FvH4_2g27870
prunus_persica	Prupe.1G489400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296721 RchiOBHm_Chr6g0296731
rosa_laevigata	RLG00000011664 RLG00000011665
rosa_multiflora	Rmu_ssc0000192.1_g000004 Rmu_ssc0000192.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171220 Rroxscaffold_7G00171230
rosa_rugosa	Rorug06G0265000 Rorug06G0265100 Rorug06G0265200 Rorug06G0265300 Rorug06G0265400
rosa_samantha	Rh6AG376400 Rh6BG384600 Rh6BG384700 Rh6CG390000 Rh6CG390100 Rh6DG377100
rosa_wichuraiana	Rw6G032900 Rw6G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	180
AclI	AACGTT	2 cut(s)	194, 264
AclWI	GGATC	1 cut(s)	89
AcuI	CTGAAG	2 cut(s)	540, 562
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflII	CTTAAG	1 cut(s)	208
AluBI	AGCT	4 cut(s)	153, 367, 461, 496
AluI	AGCT	4 cut(s)	153, 367, 461, 496
Alw26I	GTCTC	2 cut(s)	408, 441
AlwI	GGATC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	2 cut(s)	397, 468
ApeKI	GCWGC	2 cut(s)	177, 496
AseI	ATTAAT	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	389
BbsI	GAAGAC	2 cut(s)	428, 528
BbvI	GCAGC	2 cut(s)	189, 483
BccI	CCATC	1 cut(s)	324
BceAI	ACGGC	1 cut(s)	412
BciVI	GTATCC	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	408, 441
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	175
BfrI	CTTAAG	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	3 cut(s)	178, 181, 497
BlsI	GCNGC	3 cut(s)	179, 182, 498
BmcAI	AGTACT	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	584
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	109, 334
BmuI	ACTGGG	1 cut(s)	240
BoxI	GACNNNNGTC	1 cut(s)	428
BpiI	GAAGAC	2 cut(s)	428, 528
BpmI	CTGGAG	1 cut(s)	569
BpuEI	CTTGAG	3 cut(s)	25, 171, 553
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	96, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	96, 123
BseGI	GGATG	2 cut(s)	347, 564
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	2 cut(s)	159, 334
BseNI	ACTGG	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	189, 483
BseYI	CCCAGC	1 cut(s)	367
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	2 cut(s)	399, 470
BsiHKCI	CYCGRG	1 cut(s)	389
BslFI	GGGAC	3 cut(s)	386, 547, 551
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	408, 441
BsmFI	GGGAC	3 cut(s)	386, 547, 551
BsnI	GGCC	2 cut(s)	399, 470
BsoBI	CYCGRG	1 cut(s)	389
Bsp143I	GATC	3 cut(s)	21, 81, 478
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	2 cut(s)	399, 470
BspCNI	CTCAG	2 cut(s)	160, 333
BspLI	GGNNCC	1 cut(s)	584
BspMAI	CTGCAG	1 cut(s)	179
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	89
BspTI	CTTAAG	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	96, 123
BssMI	GATC	3 cut(s)	21, 81, 478
BssT1I	CCWWGG	2 cut(s)	96, 123
Bst4CI	ACNGT	2 cut(s)	109, 452
BstAFI	CTTAAG	1 cut(s)	208
BstDEI	CTNAG	3 cut(s)	66, 168, 320
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	347, 564
BstKTI	GATC	3 cut(s)	24, 84, 481
BstMAI	GTCTC	2 cut(s)	408, 441
BstMBI	GATC	3 cut(s)	21, 81, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 595
BstNSI	RCATGY	1 cut(s)	310
BstPAI	GACNNNNGTC	1 cut(s)	428
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	189, 483
BstV2I	GAAGAC	2 cut(s)	428, 528
BstXI	CCANNNNNNTGG	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	399, 470
BtsCI	GGATG	2 cut(s)	347, 564
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	4 cut(s)	257, 307, 352, 476
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	3 cut(s)	66, 168, 320
DpnI	GATC	3 cut(s)	23, 83, 480
DpnII	GATC	3 cut(s)	21, 81, 478
Eco130I	CCWWGG	2 cut(s)	96, 123
Eco57I	CTGAAG	2 cut(s)	540, 562
Eco88I	CYCGRG	1 cut(s)	389
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	96, 123
ErhI	CCWWGG	2 cut(s)	96, 123
FaeI	CATG	4 cut(s)	260, 310, 355, 479
FaqI	GGGAC	3 cut(s)	386, 547, 551
FatI	CATG	4 cut(s)	256, 306, 351, 475
FauNDI	CATATG	1 cut(s)	567
Fnu4HI	GCNGC	3 cut(s)	178, 181, 497
FokI	GGATG	2 cut(s)	334, 571
Fsp4HI	GCNGC	3 cut(s)	178, 181, 497
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	3 cut(s)	178, 181, 497
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	569
HaeIII	GGCC	2 cut(s)	399, 470
Hin1II	CATG	4 cut(s)	260, 310, 355, 479
HinfI	GANTC	1 cut(s)	285
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	169, 413
Hpy188III	TCNNGA	5 cut(s)	25, 88, 188, 289, 391
HpyAV	CCTTC	2 cut(s)	66, 286
HpyCH4III	ACNGT	2 cut(s)	109, 452
HpyCH4IV	ACGT	2 cut(s)	194, 264
HpyCH4V	TGCA	3 cut(s)	177, 310, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 595
HpyF3I	CTNAG	3 cut(s)	66, 168, 320
HpySE526I	ACGT	2 cut(s)	194, 264
Hsp92II	CATG	4 cut(s)	260, 310, 355, 479
Kzo9I	GATC	3 cut(s)	21, 81, 478
LmnI	GCTCC	1 cut(s)	588
Lsp1109I	GCAGC	2 cut(s)	189, 483
LweI	GCATC	2 cut(s)	109, 334
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	2 cut(s)	194, 264
MaeIII	GTNAC	2 cut(s)	55, 452
MalI	GATC	3 cut(s)	23, 83, 480
MboI	GATC	3 cut(s)	21, 81, 478
MboII	GAAGA	3 cut(s)	433, 533, 568
MluCI	AATT	2 cut(s)	275, 487
MnlI	CCTC	9 cut(s)	21, 231, 331, 421, 432, 460, 494, 528, 549
MseI	TTAA	3 cut(s)	144, 209, 330
MspA1I	CMGCKG	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	208
MwoI	GCNNNNNNNGC	2 cut(s)	467, 595
NdeI	CATATG	1 cut(s)	567
NdeII	GATC	3 cut(s)	21, 81, 478
NlaIII	CATG	4 cut(s)	260, 310, 355, 479
NlaIV	GGNNCC	1 cut(s)	584
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	310
PaeR7I	CTCGAG	1 cut(s)	389
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	3 cut(s)	179, 182, 498
PshAI	GACNNNNGTC	1 cut(s)	428
PshBI	ATTAAT	1 cut(s)	144
Psp1406I	AACGTT	2 cut(s)	194, 264
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	584
PstI	CTGCAG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	3 cut(s)	144, 209, 330
SatI	GCNGC	3 cut(s)	178, 181, 497
Sau3AI	GATC	3 cut(s)	21, 81, 478
ScaI	AGTACT	1 cut(s)	173
SfaNI	GCATC	2 cut(s)	109, 334
SfcI	CTRYAG	1 cut(s)	175
Sfr274I	CTCGAG	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	5 cut(s)	40, 186, 208, 389, 532
SmoI	CTYRAG	5 cut(s)	40, 186, 208, 389, 532
Sse9I	AATT	2 cut(s)	275, 487
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	1 cut(s)	150
StyI	CCWWGG	2 cut(s)	96, 123
TaaI	ACNGT	2 cut(s)	109, 452
TaiI	ACGT	2 cut(s)	197, 267
TaqI	TCGA	1 cut(s)	390
TasI	AATT	2 cut(s)	275, 487
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	3 cut(s)	144, 209, 330
Tru9I	TTAA	3 cut(s)	144, 209, 330
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	177, 496
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	288, 368
TspRI	CASTG	1 cut(s)	112
Vha464I	CTTAAG	1 cut(s)	208
VspI	ATTAAT	1 cut(s)	144
XceI	RCATGY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XhoI	CTCGAG	1 cut(s)	389
XspI	CTAG	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.