Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006738

Physical Location & Seq

Genomic Coordinates Reverse (-)

41178240 .. 41180607

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0265300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGTTGATCTTTAAAACTTTTGGAATGACTTCTCAGTCTTCAGAAGCTGTTTTGATATTGGTTGCTTCCTTTTCTTCTTCAGTCTTGGATTTGAGTGTGAGTACTGATCACTGCAGAGCTCTACATCAGTACAATGCCCAACTGCAAATGGAGAAATCAGGAGTGGATATGTGCGGGAAGCACAGGTTTTCTGAAATTCCAAGCAGATCAATAAACAAACAGGGGAAAAGGTGTAACAAAAGGATTGAAAATTCAATTCTATGTTCAATAGATAAGATCACAAATGGGAAGGCATGTTTGAACTTTGGATGGAGGAAGACCGCTGACGCGGCTGCTGCTATTCTTTCAACAGAGTACAACAGGATGTTTTTAAAGAGAACATGTTTTCTTGAAAGCCAGTACAATTCCTTAAGTTCACCTTGTTCAGAAGACTTGGACGATCACTTGCCAAAGACATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

154

Amino Acids

17.24

Weight (kDa)

8.43

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20240 AT5G20240
fragaria_vesca	FvH4_2g27860 FvH4_2g27870
prunus_persica	Prupe.1G489400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296721 RchiOBHm_Chr6g0296731
rosa_laevigata	RLG00000011664 RLG00000011665
rosa_multiflora	Rmu_ssc0000192.1_g000004 Rmu_ssc0000192.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171220 Rroxscaffold_7G00171230
rosa_rugosa	Rorug06G0265000 Rorug06G0265100 Rorug06G0265200 Rorug06G0265300 Rorug06G0265400
rosa_samantha	Rh6AG376400 Rh6BG384600 Rh6BG384700 Rh6CG390000 Rh6CG390100 Rh6DG377100
rosa_wichuraiana	Rw6G032900 Rw6G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	37
AccII	CGCG	1 cut(s)	332
AciI	CCGC	3 cut(s)	177, 324, 332
AcsI	RAATTY	2 cut(s)	198, 253
AcuI	CTGAAG	2 cut(s)	27, 66
AfaI	GTAC	4 cut(s)	106, 134, 359, 404
AflII	CTTAAG	1 cut(s)	412
AflIII	ACRYGT	2 cut(s)	383, 458
AgsI	TTSAA	6 cut(s)	251, 258, 270, 304, 351, 395
AluBI	AGCT	2 cut(s)	50, 122
AluI	AGCT	2 cut(s)	50, 122
Alw21I	GWGCWC	1 cut(s)	124
AlwNI	CAGNNNCTG	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	335, 338
ApoI	RAATTY	2 cut(s)	198, 253
Asp700I	GAANNNNTTC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	124
BbsI	GAAGAC	3 cut(s)	33, 326, 438
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	322, 325
BccI	CCATC	1 cut(s)	306
BclI	TGATCA	1 cut(s)	109
BfmI	CTRYAG	1 cut(s)	115
BfrI	CTTAAG	1 cut(s)	412
BisI	GCNGC	3 cut(s)	333, 336, 339
BlsI	GCNGC	3 cut(s)	334, 337, 340
BmcAI	AGTACT	1 cut(s)	106
BpiI	GAAGAC	3 cut(s)	33, 326, 438
Bse1I	ACTGG	1 cut(s)	400
BseGI	GGATG	2 cut(s)	317, 372
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	322, 325
Bsh1236I	CGCG	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	5 cut(s)	9, 109, 209, 279, 442
BspACI	CCGC	3 cut(s)	177, 324, 332
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	332
BspMAI	CTGCAG	1 cut(s)	119
BspTI	CTTAAG	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	400
BssMI	GATC	5 cut(s)	9, 109, 209, 279, 442
BstAFI	CTTAAG	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	317, 372
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	5 cut(s)	12, 112, 212, 282, 445
BstMBI	GATC	5 cut(s)	9, 109, 209, 279, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 338
BstNSI	RCATGY	3 cut(s)	300, 387, 462
BstSFI	CTRYAG	1 cut(s)	115
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	322, 325
BstV2I	GAAGAC	3 cut(s)	33, 326, 438
BtsCI	GGATG	2 cut(s)	317, 372
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
CaiI	CAGNNNCTG	1 cut(s)	50
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	4 cut(s)	105, 133, 358, 403
CviAII	CATG	3 cut(s)	297, 384, 459
CviJI	RGCY	4 cut(s)	50, 122, 335, 399
CviKI_1	RGCY	4 cut(s)	50, 122, 335, 399
CviQI	GTAC	4 cut(s)	105, 133, 358, 403
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	5 cut(s)	11, 111, 211, 281, 444
DpnII	GATC	5 cut(s)	9, 109, 209, 279, 442
DraI	TTTAAA	2 cut(s)	16, 375
DrdI	GACNNNNNNGTC	1 cut(s)	37
DseDI	GACNNNNNNGTC	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	27, 66
EcoICRI	GAGCTC	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	124
FaeI	CATG	3 cut(s)	300, 387, 462
FaiI	YATR	5 cut(s)	173, 265, 298, 385, 460
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FatI	CATG	3 cut(s)	296, 383, 458
FauI	CCCGC	1 cut(s)	170
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	333, 336, 339
FokI	GGATG	2 cut(s)	324, 379
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	333, 336, 339
GluI	GCNGC	3 cut(s)	333, 336, 339
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	300, 387, 462
HphI	GGTGA	1 cut(s)	411
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	3 cut(s)	46, 196, 430
Hpy188III	TCNNGA	2 cut(s)	162, 392
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	1 cut(s)	286
HpyCH4V	TGCA	2 cut(s)	117, 148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 338
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	300, 387, 462
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	5 cut(s)	9, 109, 209, 279, 442
LpnPI	CCDG	5 cut(s)	147, 172, 209, 349, 413
Lsp1109I	GCAGC	2 cut(s)	322, 325
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	5 cut(s)	11, 111, 211, 281, 444
MboI	GATC	5 cut(s)	9, 109, 209, 279, 442
MboII	GAAGA	5 cut(s)	33, 69, 72, 331, 443
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	4 cut(s)	198, 253, 258, 406
MnlI	CCTC	1 cut(s)	309
MroXI	GAANNNNTTC	1 cut(s)	31
MseI	TTAA	3 cut(s)	15, 374, 413
MspA1I	CMGCKG	1 cut(s)	326
MspCI	CTTAAG	1 cut(s)	412
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	332, 338
NdeII	GATC	5 cut(s)	9, 109, 209, 279, 442
NlaIII	CATG	3 cut(s)	300, 387, 462
NspI	RCATGY	3 cut(s)	300, 387, 462
PciI	ACATGT	2 cut(s)	383, 458
PdmI	GAANNNNTTC	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	334, 337, 340
PscI	ACATGT	2 cut(s)	383, 458
Psp124BI	GAGCTC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	4 cut(s)	106, 134, 359, 404
RsaNI	GTAC	4 cut(s)	105, 133, 358, 403
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	3 cut(s)	15, 374, 413
SatI	GCNGC	3 cut(s)	333, 336, 339
Sau3AI	GATC	5 cut(s)	9, 109, 209, 279, 442
ScaI	AGTACT	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	5 cut(s)	52, 124, 191, 236, 424
SfcI	CTRYAG	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	4 cut(s)	198, 253, 258, 406
SsiI	CCGC	3 cut(s)	177, 324, 332
SstI	GAGCTC	1 cut(s)	124
TasI	AATT	4 cut(s)	198, 253, 258, 406
TatI	WGTACW	4 cut(s)	104, 132, 357, 402
TauI	GCSGC	1 cut(s)	335
Tru1I	TTAA	3 cut(s)	15, 374, 413
Tru9I	TTAA	3 cut(s)	15, 374, 413
TscAI	CASTG	1 cut(s)	119
TseI	GCWGC	2 cut(s)	335, 338
TspRI	CASTG	1 cut(s)	119
Vha464I	CTTAAG	1 cut(s)	412
XapI	RAATTY	2 cut(s)	198, 253
XceI	RCATGY	3 cut(s)	300, 387, 462
XmnI	GAANNNNTTC	1 cut(s)	31
ZrmI	AGTACT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.