Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006738

Physical Location & Seq

Genomic Coordinates Reverse (-)

41173936 .. 41177635

Gene Structure 3700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0265200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTTCTAATTTGTTTCTTTTATTCTCTAAAACAAATATTGGGAACAGTGTGCAATCAAAATTTGGAAGTGTTCTGAACTCAGTGTTTCACCCTCAAATTGCTGAAGGATCTAATCAATGTCAGAATGAGAACCAATTTAGAGATACATCAGGCGATTTGAATCAAAATAGCTTCTCCCAATGTCCGCAAACTAATGATATGACAGATCAATGCTCACAGTCATTTGGTCATGCAATATATCAAAGAAGCAAGCAAGGATTGATTGTGAGATATAAAGATTCAGGTGATAATATCTACAAATGTGATGATTGCAACGCATGCTTTTGGTTTGGAGAAGCTGTTAAAAGATCATCTTCAAATGCATCTCTTATTTATACAAATTGTTCTAGAAAAGGTCAGATCAAAGTTGAACAACCAAAGCCAACACCAGCTTTTCTTGAAAATTTGTTAAATCCAGATAATGGCTCAGAAAGCAAATTGTTTAGAGAAAATTTGCCTCCTGATGGTGAATGTCCTAAGTATGCCCAACTGTACGTATATGATACAAAAAATGAAGTCTCGAACAGTATTAATGTTGTTGATCCTACTCATGTGAATGAAAATATCAAATCAGATATCGTGCAAGGACTTATTAAGATGTTCGATGAAACTAATGAATTGGTAAAAACTTATCGAATGGCTAGAGATAAATATGAACATCATGCTTTGCCTTCATTCAATATGACTATGCTCAGTCGCCAACCAACTGATAGCAAACAATATGAAGAACCAACAAGTGAAGAAATTGGTGGTTTAATTGTTGGTGATATTGGAGAATTTAACTCGAATAAAGACATAATCATTGAATCAAATGACGGAAGATTACGACGGATTTTCAAAATACATCCAAAGTATATGTCATTACAATATTCAATACTTTTTCCATATGGTGAAGATGGATACAGGCCAGATTTGCCAATACAACAAGTTATAGGAAATTCTCGAAAAAAAAGACAGAGAATATCTATGCGAGAGTATATTACATATCAAATTCAAGATAGAAATAATGAAGTACTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

354

Amino Acids

40.54

Weight (kDa)

5.94

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20240 AT5G20240
fragaria_vesca	FvH4_2g27860 FvH4_2g27870
prunus_persica	Prupe.1G489400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296721 RchiOBHm_Chr6g0296731
rosa_laevigata	RLG00000011664 RLG00000011665
rosa_multiflora	Rmu_ssc0000192.1_g000004 Rmu_ssc0000192.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171220 Rroxscaffold_7G00171230
rosa_rugosa	Rorug06G0265000 Rorug06G0265100 Rorug06G0265200 Rorug06G0265300 Rorug06G0265400
rosa_samantha	Rh6AG376400 Rh6BG384600 Rh6BG384700 Rh6CG390000 Rh6CG390100 Rh6DG377100
rosa_wichuraiana	Rw6G032900 Rw6G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	2 cut(s)	118, 578
AcsI	RAATTY	6 cut(s)	62, 445, 493, 818, 979, 1032
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	2 cut(s)	536, 1056
AfiI	CCNNNNNNNGG	2 cut(s)	464, 506
AgsI	TTSAA	9 cut(s)	163, 360, 413, 443, 721, 848, 880, 915, 1037
AluBI	AGCT	3 cut(s)	174, 341, 434
AluI	AGCT	3 cut(s)	174, 341, 434
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	2 cut(s)	118, 578
AoxI	GGCC	1 cut(s)	947
ApoI	RAATTY	6 cut(s)	62, 445, 493, 818, 979, 1032
ArsI	GACNNNNNNTTYG	2 cut(s)	884, 916
AseI	ATTAAT	1 cut(s)	573
AsuHPI	GGTGA	5 cut(s)	83, 299, 521, 818, 944
BccI	CCATC	2 cut(s)	500, 932
BciVI	GTATCC	1 cut(s)	935
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	2 cut(s)	390, 684
BfuI	GTATCC	1 cut(s)	935
BmcAI	AGTACT	1 cut(s)	1056
BmsI	GCATC	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	538
BsaBI	GATNNNNATC	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 506
Bse8I	GATNNNNATC	1 cut(s)	162
BseGI	GGATG	1 cut(s)	886
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	464, 506
BseMII	CTCAG	3 cut(s)	96, 483, 748
BshFI	GGCC	1 cut(s)	949
BslI	CCNNNNNNNGG	2 cut(s)	464, 506
BsmAI	GTCTC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	949
Bsp143I	GATC	5 cut(s)	110, 208, 350, 402, 583
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	949
BspCNI	CTCAG	3 cut(s)	95, 482, 747
BspPI	GGATC	2 cut(s)	118, 578
BssMI	GATC	5 cut(s)	110, 208, 350, 402, 583
Bst4CI	ACNGT	4 cut(s)	50, 222, 534, 569
BstAPI	GCANNNNNTGC	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	538
BstC8I	GCNNGC	2 cut(s)	254, 322
BstDEI	CTNAG	4 cut(s)	82, 469, 519, 734
BstF5I	GGATG	1 cut(s)	886
BstKTI	GATC	5 cut(s)	113, 211, 353, 405, 586
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	5 cut(s)	110, 208, 350, 402, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 474, 955
BstNSI	RCATGY	1 cut(s)	324
BstSNI	TACGTA	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BsuI	GTATCC	1 cut(s)	935
BsuRI	GGCC	1 cut(s)	949
BtsCI	GGATG	1 cut(s)	886
BtsIMutI	CAGTG	2 cut(s)	55, 90
Cac8I	GCNNGC	2 cut(s)	254, 322
Csp6I	GTAC	2 cut(s)	535, 1055
CviAII	CATG	4 cut(s)	233, 321, 593, 704
CviJI	RGCY	8 cut(s)	5, 174, 341, 424, 434, 468, 683, 949
CviKI_1	RGCY	8 cut(s)	5, 174, 341, 424, 434, 468, 683, 949
CviQI	GTAC	2 cut(s)	535, 1055
DdeI	CTNAG	4 cut(s)	82, 469, 519, 734
DpnI	GATC	5 cut(s)	112, 210, 352, 404, 585
DpnII	GATC	5 cut(s)	110, 208, 350, 402, 583
Eco105I	TACGTA	1 cut(s)	538
Eco32I	GATATC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	619
EcoT22I	ATGCAT	1 cut(s)	367
FaeI	CATG	4 cut(s)	236, 324, 596, 707
FalI	AAGNNNNNCTT	2 cut(s)	340, 372
FatI	CATG	4 cut(s)	232, 320, 592, 703
FauNDI	CATATG	1 cut(s)	928
FokI	GGATG	1 cut(s)	873
FspBI	CTAG	2 cut(s)	390, 684
HaeIII	GGCC	1 cut(s)	949
Hin1II	CATG	4 cut(s)	236, 324, 596, 707
HinfI	GANTC	3 cut(s)	163, 281, 848
HphI	GGTGA	5 cut(s)	83, 299, 521, 818, 944
Hpy188I	TCNGA	5 cut(s)	78, 126, 402, 472, 616
Hpy188III	TCNNGA	7 cut(s)	390, 440, 458, 503, 562, 984, 1037
Hpy99I	CGWCG	1 cut(s)	873
HpyAV	CCTTC	2 cut(s)	101, 723
HpyCH4III	ACNGT	4 cut(s)	50, 222, 534, 569
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	5 cut(s)	55, 236, 315, 365, 625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 474, 955
HpyF3I	CTNAG	4 cut(s)	82, 469, 519, 734
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	4 cut(s)	236, 324, 596, 707
Kzo9I	GATC	5 cut(s)	110, 208, 350, 402, 583
LpnPI	CCDG	7 cut(s)	138, 270, 444, 471, 516, 931, 963
LweI	GCATC	1 cut(s)	374
MaeI	CTAG	2 cut(s)	390, 684
MaeII	ACGT	1 cut(s)	537
MalI	GATC	5 cut(s)	112, 210, 352, 404, 585
MboI	GATC	5 cut(s)	110, 208, 350, 402, 583
MboII	GAAGA	5 cut(s)	348, 779, 794, 873, 947
MflI	RGATCY	1 cut(s)	110
MnlI	CCTC	2 cut(s)	105, 510
Mph1103I	ATGCAT	1 cut(s)	367
MseI	TTAA	7 cut(s)	345, 452, 573, 636, 797, 822, 1063
MslI	CAYNNNNRTG	1 cut(s)	597
MwoI	GCNNNNNNNGC	3 cut(s)	321, 474, 955
NdeI	CATATG	1 cut(s)	928
NdeII	GATC	5 cut(s)	110, 208, 350, 402, 583
NlaIII	CATG	4 cut(s)	236, 324, 596, 707
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	324
PaeI	GCATGC	1 cut(s)	324
PfeI	GAWTC	3 cut(s)	163, 281, 848
PflMI	CCANNNNNTGG	1 cut(s)	464
Ppu21I	YACGTR	1 cut(s)	538
PshBI	ATTAAT	1 cut(s)	573
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	2 cut(s)	536, 1056
RsaNI	GTAC	2 cut(s)	535, 1055
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	7 cut(s)	345, 452, 573, 636, 797, 822, 1063
Sau3AI	GATC	5 cut(s)	110, 208, 350, 402, 583
ScaI	AGTACT	1 cut(s)	1056
SetI	ASST	6 cut(s)	176, 289, 343, 400, 436, 540
SfaNI	GCATC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	597
SnaBI	TACGTA	1 cut(s)	538
SphI	GCATGC	1 cut(s)	324
SsiI	CCGC	1 cut(s)	188
SspI	AATATT	2 cut(s)	40, 911
SspMI	CTAG	2 cut(s)	390, 684
TaaI	ACNGT	4 cut(s)	50, 222, 534, 569
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	5 cut(s)	563, 645, 676, 827, 985
TatI	WGTACW	1 cut(s)	1054
TfiI	GAWTC	3 cut(s)	163, 281, 848
Tru1I	TTAA	7 cut(s)	345, 452, 573, 636, 797, 822, 1063
Tru9I	TTAA	7 cut(s)	345, 452, 573, 636, 797, 822, 1063
TscAI	CASTG	2 cut(s)	55, 90
TspDTI	ATGAA	8 cut(s)	570, 615, 663, 672, 705, 711, 780, 1065
TspGWI	ACGGA	2 cut(s)	873, 886
TspRI	CASTG	2 cut(s)	55, 90
Van91I	CCANNNNNTGG	1 cut(s)	464
VspI	ATTAAT	1 cut(s)	573
XapI	RAATTY	6 cut(s)	62, 445, 493, 818, 979, 1032
XbaI	TCTAGA	1 cut(s)	389
XceI	RCATGY	1 cut(s)	324
XspI	CTAG	2 cut(s)	390, 684
ZrmI	AGTACT	1 cut(s)	1056
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.