Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0006738

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG376400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGGAGGGGTAAGATTGAGATTAAGAGGATTGAGAACTCAAGCAACAGGCAGGTGACCTTTGCTAAGAGAAAGAATGGGATCATCAAGAAGGCTAAGGAAATCACTGTTCTTTGTGATGCCAAGGTTTCTCTTATTATTAATGCTAGCTCTGGGAAAATGGTTGAGTACAACAGCGGCTCTCCAGAAACGTTGCTGGAAATCTTAGATAGATACCATTCACAGACTGGGAAGAAGTTGTGGGATGCCAAGCATGAGAACCTCTGCAATGAAGTGGATAGAGTCAAGAAAGACAATGATGGCATGCAAATTGAGCTTCGGCATTTGAAGGGGGAAGACATAACATCTCTGAACCATGTGGACCTGATGGCCTTAGAGGAAGCAATTGAAAATGGCCTTGCAAGTATCAGAGACAGAATGTCGAAGTACATGGACGCGGTTAGAGAAAATAACAGAGCTCTGGAGGACGAGAATAAGCGCCTCGCATACCAGCTGCACAAAATGATGAAATATGAAGAGAATTTGAGGGACATGAACTACAACAACAACAACCAGATACCTTTTGCCTTACGTGTCCAGCCTAATCAGCCAAATCTCCACGACAGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

203

Amino Acids

23.55

Weight (kDa)

8.74

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.6e-20	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	82 - 165	2.5e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20240 AT5G20240
fragaria_vesca	FvH4_2g27860 FvH4_2g27870
prunus_persica	Prupe.1G489400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296721 RchiOBHm_Chr6g0296731
rosa_laevigata	RLG00000011664 RLG00000011665
rosa_multiflora	Rmu_ssc0000192.1_g000004 Rmu_ssc0000192.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171220 Rroxscaffold_7G00171230
rosa_rugosa	Rorug06G0265000 Rorug06G0265100 Rorug06G0265200 Rorug06G0265300 Rorug06G0265400
rosa_samantha	Rh6AG376400 Rh6BG384600 Rh6BG384700 Rh6CG390000 Rh6CG390100 Rh6DG377100
rosa_wichuraiana	Rw6G032900 Rw6G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccII	CGCG	1 cut(s)	437
AciI	CCGC	2 cut(s)	177, 437
AclI	AACGTT	1 cut(s)	191
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	520
AfaI	GTAC	2 cut(s)	170, 428
AflIII	ACRYGT	1 cut(s)	571
AgsI	TTSAA	2 cut(s)	328, 389
AhdI	GACNNNNNGTC	1 cut(s)	418
AluBI	AGCT	4 cut(s)	150, 316, 458, 493
AluI	AGCT	4 cut(s)	150, 316, 458, 493
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	369, 394
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	1 cut(s)	520
AseI	ATTAAT	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	67
AsuNHI	GCTAGC	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	480
BccI	CCATC	2 cut(s)	293, 361
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	481
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	178, 494
BlsI	GCNGC	2 cut(s)	179, 495
Bme18I	GGWCC	1 cut(s)	361
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	361
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	109, 235
BmtI	GCTAGC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	342
BpmI	CTGGAG	2 cut(s)	168, 482
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	480
BsgI	GTGCAG	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	2 cut(s)	371, 396
BsiHKAI	GWGCWC	1 cut(s)	460
BslFI	GGGAC	1 cut(s)	542
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	2 cut(s)	371, 396
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	2 cut(s)	177, 437
BspANI	GGCC	2 cut(s)	371, 396
BspFNI	CGCG	1 cut(s)	437
BspMI	ACCTGC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	510
BstBAI	YACGTR	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	148, 305
BstDEI	CTNAG	4 cut(s)	66, 96, 205, 373
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 586
BstNSI	RCATGY	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	55
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	480
BstV2I	GAAGAC	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	371, 396
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	148, 305
CfoI	GCGC	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	361
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	169, 427
CviAII	CATG	5 cut(s)	254, 304, 356, 430, 532
CviQI	GTAC	2 cut(s)	169, 427
DdeI	CTNAG	4 cut(s)	66, 96, 205, 373
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DriI	GACNNNNNGTC	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	510
Eam1105I	GACNNNNNGTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	458
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	458
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	5 cut(s)	257, 307, 359, 433, 535
FaiI	YATR	8 cut(s)	255, 305, 341, 357, 431, 487, 513, 533
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	5 cut(s)	253, 303, 355, 429, 531
Fnu4HI	GCNGC	2 cut(s)	178, 494
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	2 cut(s)	178, 494
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	2 cut(s)	178, 494
GsuI	CTGGAG	2 cut(s)	168, 482
HaeII	RGCGCY	1 cut(s)	481
HaeIII	GGCC	2 cut(s)	371, 396
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	5 cut(s)	257, 307, 359, 433, 535
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HinfI	GANTC	1 cut(s)	282
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	351, 410
Hpy188III	TCNNGA	4 cut(s)	88, 185, 286, 461
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	85, 322
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	191, 571
HpyCH4V	TGCA	4 cut(s)	267, 307, 401, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 586
HpyF3I	CTNAG	4 cut(s)	66, 96, 205, 373
HpySE526I	ACGT	2 cut(s)	191, 571
Hsp92II	CATG	5 cut(s)	257, 307, 359, 433, 535
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	81
Lsp1109I	GCAGC	1 cut(s)	480
LweI	GCATC	2 cut(s)	109, 235
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	2 cut(s)	191, 571
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	3 cut(s)	244, 347, 527
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	3 cut(s)	309, 384, 520
MlyI	GAGTC	1 cut(s)	291
MnlI	CCTC	6 cut(s)	21, 272, 370, 457, 491, 519
MseI	TTAA	2 cut(s)	24, 141
MspA1I	CMGCKG	2 cut(s)	177, 493
MunI	CAATTG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	313, 586
NdeII	GATC	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	5 cut(s)	257, 307, 359, 433, 535
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	307
PaeI	GCATGC	1 cut(s)	307
PaqCI	CACCTGC	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	179, 495
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Ppu21I	YACGTR	1 cut(s)	572
PshBI	ATTAAT	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	460
Psp1406I	AACGTT	1 cut(s)	191
PspEI	GGTNACC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	2 cut(s)	170, 428
RsaNI	GTAC	2 cut(s)	169, 427
SacI	GAGCTC	1 cut(s)	460
SaqAI	TTAA	2 cut(s)	24, 141
SatI	GCNGC	2 cut(s)	178, 494
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	2 cut(s)	109, 235
SinI	GGWCC	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SphI	GCATGC	1 cut(s)	307
Sse9I	AATT	3 cut(s)	309, 384, 520
SsiI	CCGC	2 cut(s)	177, 437
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	2 cut(s)	194, 574
TaqI	TCGA	1 cut(s)	422
TasI	AATT	3 cut(s)	309, 384, 520
TatI	WGTACW	2 cut(s)	168, 426
TauI	GCSGC	1 cut(s)	180
Tru1I	TTAA	2 cut(s)	24, 141
Tru9I	TTAA	2 cut(s)	24, 141
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	493
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	285, 521, 528, 548
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	361
VspI	ATTAAT	1 cut(s)	141
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.