Rh6CG390000
MADS Family

Floral homeotic protein PMADS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006738
Physical Location & Seq
Forward (+)
57666215 .. 57668639
2425 bp
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UTR
Exon/CDS
Intron
Rh6CG390000.1

Sequence Viewer

Length: 465 bp
ATGGTTGAGTACAACAGCGGCTCTCCAGAAACGTTGCTGGAAATCTTAGATAGATACCATTCACAGACTGGGAAGAAGTTGTGGGATGCCAAGCATGAGAACCTCTCCAATGAACTGGATAGAATCAAGAAAGAAAATGACGGCATGCAAGTCCAGCTCAGGCATTTGAAGGGGGAGGACATAACATCTTTGAACCACAGCGAGCTGGGGGACTTGGAGGAAGCACTTGAGAATGGCCTTACTAGTGTCAGAGGCAAGAAGTCAGATGTCGTCCAGATGCAAAGAGACAGTCACAAAGCTGCGGAGGAAGAGCATGATCGCCTCAATTATGAGCTGCACAAACAGACCGTAAAATCTGAAGAGAACTTGAGGGACATGGAGTATCATCAGAGGATGTCCCAGATGTCTTTCTTCCGAGTCCAGCCTATTCAGCCTAATCTCCACGACGACCACGATAGAGAATGA

Protein Analysis

154

Amino Acids

18.13

Weight (kDa)

5.35

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 29 - 115 1.6e-17 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 18, 302
AclI AACGTT 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 2 cut(s) 169, 193
AhlI ACTAGT 1 cut(s) 242
AluBI AGCT 4 cut(s) 157, 205, 299, 334
AluI AGCT 4 cut(s) 157, 205, 299, 334
Alw26I GTCTC 1 cut(s) 279
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 299, 334
ArsI GACNNNNNNTTYG 2 cut(s) 274, 306
BbvI GCAGC 2 cut(s) 286, 321
BceAI ACGGC 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 279
BcuI ACTAGT 1 cut(s) 242
BfaI CTAG 1 cut(s) 243
BisI GCNGC 3 cut(s) 19, 300, 335
BlsI GCNGC 3 cut(s) 20, 301, 336
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 76, 267
BmuI ACTGGG 1 cut(s) 78
BplI GAGNNNNNCTC 2 cut(s) 89, 121
BpmI CTGGAG 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 158
BpuEI CTTGAG 2 cut(s) 248, 388
Bse1I ACTGG 2 cut(s) 73, 120
BseGI GGATG 2 cut(s) 91, 399
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 2 cut(s) 73, 120
BseXI GCAGC 2 cut(s) 286, 321
BseYI CCCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 320
BshFI GGCC 1 cut(s) 237
BslFI GGGAC 3 cut(s) 224, 382, 386
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 3 cut(s) 224, 382, 386
BsnI GGCC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 2 cut(s) 18, 302
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 171
BspQI GCTCTTC 1 cut(s) 303
BsrI ACTGG 2 cut(s) 73, 120
BssMI GATC 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 290, 349
Bst6I CTCTTC 2 cut(s) 303, 354
BstC8I GCNNGC 2 cut(s) 146, 203
BstDEI CTNAG 2 cut(s) 46, 158
BstF5I GGATG 2 cut(s) 91, 399
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 154, 430
BstNSI RCATGY 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 286, 321
BstXI CCANNNNNNTGG 1 cut(s) 115
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 2 cut(s) 91, 399
Cac8I GCNNGC 2 cut(s) 146, 203
Csp6I GTAC 1 cut(s) 10
CviAII CATG 4 cut(s) 95, 145, 314, 376
CviJI RGCY 8 cut(s) 21, 157, 205, 237, 299, 334, 424, 433
CviKI_1 RGCY 8 cut(s) 21, 157, 205, 237, 299, 334, 424, 433
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 46, 158
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 303, 354
EarI CTCTTC 2 cut(s) 303, 354
Eco57I CTGAAG 1 cut(s) 378
FaeI CATG 4 cut(s) 98, 148, 317, 379
FaiI YATR 6 cut(s) 96, 146, 182, 315, 330, 377
FaqI GGGAC 3 cut(s) 224, 382, 386
FatI CATG 4 cut(s) 94, 144, 313, 375
Fnu4HI GCNGC 3 cut(s) 19, 300, 335
FokI GGATG 2 cut(s) 98, 406
Fsp4HI GCNGC 3 cut(s) 19, 300, 335
FspBI CTAG 1 cut(s) 243
GluI GCNGC 3 cut(s) 19, 300, 335
GsaI CCCAGC 1 cut(s) 209
GsuI CTGGAG 1 cut(s) 9
HaeIII GGCC 1 cut(s) 237
Hin1II CATG 4 cut(s) 98, 148, 317, 379
HinfI GANTC 2 cut(s) 123, 417
Hpy188I TCNGA 5 cut(s) 251, 265, 358, 390, 416
Hpy188III TCNNGA 3 cut(s) 26, 127, 274
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 290, 349
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 148, 280, 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 430
HpyF3I CTNAG 2 cut(s) 46, 158
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 4 cut(s) 98, 148, 317, 379
Kzo9I GATC 1 cut(s) 316
LguI GCTCTTC 1 cut(s) 303
Lsp1109I GCAGC 2 cut(s) 286, 321
LweI GCATC 2 cut(s) 76, 267
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 290
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 4 cut(s) 85, 320, 371, 403
MluCI AATT 1 cut(s) 325
MlyI GAGTC 1 cut(s) 426
MnlI CCTC 8 cut(s) 113, 169, 211, 245, 298, 332, 363, 384
MspA1I CMGCKG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 154, 430
NdeII GATC 1 cut(s) 316
NlaIII CATG 4 cut(s) 98, 148, 317, 379
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 148
PaeI GCATGC 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 3 cut(s) 20, 301, 336
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
Psp1406I AACGTT 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 205
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 303
SatI GCNGC 3 cut(s) 19, 300, 335
Sau3AI GATC 1 cut(s) 316
SchI GAGTC 1 cut(s) 426
SetI ASST 6 cut(s) 35, 105, 159, 207, 301, 336
SfaNI GCATC 2 cut(s) 76, 267
SmlI CTYRAG 2 cut(s) 227, 367
SmoI CTYRAG 2 cut(s) 227, 367
SpeI ACTAGT 1 cut(s) 242
SphI GCATGC 1 cut(s) 148
Sse9I AATT 1 cut(s) 325
SsiI CCGC 2 cut(s) 18, 302
SspMI CTAG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 290, 349
TaiI ACGT 1 cut(s) 35
TasI AATT 1 cut(s) 325
TatI WGTACW 1 cut(s) 9
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 1 cut(s) 123
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 2 cut(s) 299, 334
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 126
XceI RCATGY 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.