Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010881

Physical Location & Seq

Genomic Coordinates Reverse (-)

7874572 .. 7876427

Gene Structure 1856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23395.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGTCAAGCTCAAAGTGACGAGAACTCAATTCCGACGACGACGACAACGAACACTCCTCCTCCTTCTGCGAATTCACCTCGGGATTCTGAAGATACTTCGTCGCCATCGATGGATTCTCTTCTTGCAGAAGCTGCAGCATATGGTGAAGATGATAATGAGAATGAGTCTCTTGAAGCCAAAGCACAGAGAGCTCTCGATTGTCCTTGTATAGCAGATTTGCGTAATGGCTCTTGCGGGTCTCAGTTCTCCGAGGCATTCCTTTGCTTTCTCAAAAGCACTGCTGAAGAAAAGGGATCAGACTGCGTGAATCCATTTGTAGCATTGCAAAGCTGTATCAATGCCAATCCGGATGCATTCTCTAAATCAGTTACAGGGGACGAAAAAGAAACCGAGAAAAAGGAAGAGCAGCCTCCTGTGCAAGACCATAGAATCATCCCTCCTCTCTGGGCCAAAGACCCGCCTCGCAGTGGCAATTCCAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006605 GO:0006625 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072662 GO:0072663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

162

Amino Acids

17.37

Weight (kDa)

4.34

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHCH	PF06747	79 - 114	1.8e-06	CHCH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23395
fragaria_vesca	FvH4_4g37330 FvH4_4g37330 FvH4_4g37330
malus_domestica	MD13G1001100.v1.1
prunus_persica	Prupe.1G351600_v2.0.a1
pyrus_communis	pycom13g00080 pycom13g19140
rosa_chinensis	RchiOBHm_Chr4g0447181
rosa_laevigata	RLG00000005598
rosa_multiflora	Rmu_ssc0000224.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387560
rosa_rugosa	Rorug04G0378900
rosa_samantha	Rh4AG440000 Rh4BG449100 Rh4CG466100 Rh4DG447500 Rh5BG163900
rosa_wichuraiana	Rw4G037650 Rw7G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	2 cut(s)	237, 461
AclWI	GGATC	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	2 cut(s)	111, 306
AfiI	CCNNNNNNNGG	1 cut(s)	470
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	5 cut(s)	11, 134, 194, 333, 484
AluI	AGCT	5 cut(s)	11, 134, 194, 333, 484
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	2 cut(s)	174, 246
AlwI	GGATC	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	81
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	3 cut(s)	134, 137, 409
ApoI	RAATTY	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	450
AsuHPI	GGTGA	2 cut(s)	69, 158
AvaI	CYCGRG	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	121, 149, 421
BccI	CCATC	2 cut(s)	106, 115
BcoDI	GTCTC	2 cut(s)	174, 246
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	3 cut(s)	135, 138, 410
BlsI	GCNGC	3 cut(s)	136, 139, 411
BmeT110I	CYCGRG	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	450
BmsI	GCATC	1 cut(s)	343
Bsa29I	ATCGAT	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	80, 252
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 46, 70, 76
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	323
BseAI	TCCGGA	1 cut(s)	349
BseCI	ATCGAT	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	80, 252
BseGI	GGATG	2 cut(s)	358, 435
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	257
BseRI	GAGGAG	3 cut(s)	48, 51, 432
BseXI	GCAGC	3 cut(s)	121, 149, 421
BshFI	GGCC	1 cut(s)	452
BshVI	ATCGAT	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	2 cut(s)	174, 246
BsmFI	GGGAC	1 cut(s)	392
BsmI	GAATGC	2 cut(s)	257, 356
BsnI	GGCC	1 cut(s)	452
Bso31I	GGTCTC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	296
BspACI	CCGC	2 cut(s)	237, 461
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	110
BspEI	TCCGGA	1 cut(s)	349
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	304
BspQI	GCTCTTC	1 cut(s)	399
BspTNI	GGTCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	80, 252
BssMI	GATC	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	126, 399
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	358, 435
BstKTI	GATC	1 cut(s)	299
BstMAI	GTCTC	2 cut(s)	174, 246
BstMBI	GATC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 191, 418
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	121, 149, 421
Bsu15I	ATCGAT	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	452
BsuTUI	ATCGAT	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	358, 435
BtsI	GCAGTG	2 cut(s)	279, 475
BtsIMutI	CAGTG	2 cut(s)	279, 475
CaiI	CAGNNNCTG	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	450
ClaI	ATCGAT	1 cut(s)	110
CviJI	RGCY	9 cut(s)	11, 134, 179, 194, 231, 333, 412, 452, 484
CviKI_1	RGCY	9 cut(s)	11, 134, 179, 194, 231, 333, 412, 452, 484
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
Eam1104I	CTCTTC	2 cut(s)	126, 399
EarI	CTCTTC	2 cut(s)	126, 399
Ecl136II	GAGCTC	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	194
Eco57I	CTGAAG	2 cut(s)	111, 306
Eco88I	CYCGRG	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	73
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	196
FaiI	YATR	4 cut(s)	142, 144, 212, 429
FaqI	GGGAC	1 cut(s)	392
FauI	CCCGC	2 cut(s)	230, 468
FauNDI	CATATG	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	135, 138, 410
FokI	GGATG	2 cut(s)	365, 422
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	3 cut(s)	135, 138, 410
GluI	GCNGC	3 cut(s)	135, 138, 410
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	1 cut(s)	350
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	5 cut(s)	86, 116, 167, 310, 432
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	2 cut(s)	69, 158
Hpy188I	TCNGA	4 cut(s)	36, 91, 253, 301
Hpy188III	TCNNGA	4 cut(s)	83, 173, 197, 350
Hpy99I	CGWCG	4 cut(s)	40, 43, 46, 106
HpyAV	CCTTC	1 cut(s)	75
HpyCH4V	TGCA	5 cut(s)	128, 137, 328, 356, 421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 191, 418
HpyF3I	CTNAG	1 cut(s)	243
Kpn2I	TCCGGA	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	296
LguI	GCTCTTC	1 cut(s)	399
LpnPI	CCDG	4 cut(s)	360, 363, 429, 433
Lsp1109I	GCAGC	3 cut(s)	121, 149, 421
LweI	GCATC	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	17, 370
MalI	GATC	1 cut(s)	298
MboI	GATC	1 cut(s)	296
MboII	GAAGA	5 cut(s)	104, 113, 161, 299, 416
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	3 cut(s)	30, 73, 475
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	8 cut(s)	69, 72, 90, 247, 423, 450, 453, 474
Mph1103I	ATGCAT	1 cut(s)	358
MroI	TCCGGA	1 cut(s)	349
MspI	CCGG	1 cut(s)	350
Mva1269I	GAATGC	2 cut(s)	257, 356
MwoI	GCNNNNNNNGC	3 cut(s)	134, 191, 418
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	17
NsiI	ATGCAT	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	2 cut(s)	47, 107
PctI	GAATGC	2 cut(s)	257, 356
PfeI	GAWTC	4 cut(s)	86, 116, 310, 432
PkrI	GCNGC	3 cut(s)	136, 139, 411
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	450
PstI	CTGCAG	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	399
SatI	GCNGC	3 cut(s)	135, 138, 410
Sau3AI	GATC	1 cut(s)	296
Sau96I	GGNCC	1 cut(s)	450
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	6 cut(s)	13, 82, 136, 196, 335, 486
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	135
Sse9I	AATT	3 cut(s)	30, 73, 475
SsiI	CCGC	2 cut(s)	237, 461
SstI	GAGCTC	1 cut(s)	196
TaqI	TCGA	2 cut(s)	110, 198
TasI	AATT	3 cut(s)	30, 73, 475
TfiI	GAWTC	4 cut(s)	86, 116, 310, 432
TscAI	CASTG	2 cut(s)	286, 475
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	3 cut(s)	134, 137, 409
Tsp45I	GTSAC	1 cut(s)	17
TspRI	CASTG	2 cut(s)	286, 475
XapI	RAATTY	1 cut(s)	73
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.