Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000224.1

Orthogroup ID

OG0010881

Physical Location & Seq

Genomic Coordinates Reverse (-)

13037 .. 13912

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000224.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgggtcaagttcaaagcgaggcggcggcagcagcagcaaatgtggatcgacaaggccacgccgtctcctctgctgcttccatcgactctctcatgtccgaagctgcatcatatggcaatgatgggaacgagtctcttgatttcaacgctcagaaggccctggagtgcccttgcatagccgacttacaaaagggcccttgtgggcttcagttttcagaggcttttgtttgttatctgaagagtactgtggaagagaaggtagtatccaactttgccaaaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006605 GO:0006625 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072662 GO:0072663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

94

Amino Acids

9.81

Weight (kDa)

4.45

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23395
fragaria_vesca	FvH4_4g37330 FvH4_4g37330 FvH4_4g37330
malus_domestica	MD13G1001100.v1.1
prunus_persica	Prupe.1G351600_v2.0.a1
pyrus_communis	pycom13g00080 pycom13g19140
rosa_chinensis	RchiOBHm_Chr4g0447181
rosa_laevigata	RLG00000005598
rosa_multiflora	Rmu_ssc0000224.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387560
rosa_rugosa	Rorug04G0378900
rosa_samantha	Rh4AG440000 Rh4BG449100 Rh4CG466100 Rh4DG447500 Rh5BG163900
rosa_wichuraiana	Rw4G037650 Rw7G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	23, 26
AclWI	GGATC	1 cut(s)	54
AcuI	CTGAAG	2 cut(s)	191, 257
AfaI	GTAC	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	14, 145
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw26I	GTCTC	2 cut(s)	70, 138
AlwI	GGATC	1 cut(s)	54
AoxI	GGCC	3 cut(s)	55, 156, 193
ApaI	GGGCCC	1 cut(s)	197
ApeKI	GCWGC	5 cut(s)	29, 32, 35, 74, 104
AspS9I	GGNCC	3 cut(s)	157, 193, 194
BaeGI	GKGCMC	2 cut(s)	170, 197
BanII	GRGCYC	1 cut(s)	197
BbvI	GCAGC	5 cut(s)	41, 44, 47, 61, 91
BccI	CCATC	2 cut(s)	89, 116
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	161
BciVI	GTATCC	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	70, 138
BfuI	GTATCC	1 cut(s)	274
BisI	GCNGC	7 cut(s)	24, 27, 30, 33, 36, 75, 105
BlsI	GCNGC	7 cut(s)	25, 28, 31, 34, 37, 76, 106
BmcAI	AGTACT	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	161
BmgT120I	GGNCC	3 cut(s)	157, 193, 194
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bse3DI	GCAATG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	58
BseSI	GKGCMC	2 cut(s)	170, 197
BseXI	GCAGC	5 cut(s)	41, 44, 47, 61, 91
BshFI	GGCC	3 cut(s)	57, 158, 195
BsmAI	GTCTC	2 cut(s)	70, 138
BsmBI	CGTCTC	1 cut(s)	70
BsnI	GGCC	3 cut(s)	57, 158, 195
Bsp120I	GGGCCC	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	170, 197
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	2 cut(s)	23, 26
BspANI	GGCC	3 cut(s)	57, 158, 195
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	2 cut(s)	233, 246
BstDEI	CTNAG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	2 cut(s)	70, 138
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 32, 35, 155
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstSLI	GKGCMC	2 cut(s)	170, 197
BstV1I	GCAGC	5 cut(s)	41, 44, 47, 61, 91
BsuI	GTATCC	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	57, 158, 195
Cfr13I	GGNCC	3 cut(s)	157, 193, 194
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	7 cut(s)	57, 104, 158, 179, 195, 205, 221
CviKI_1	RGCY	7 cut(s)	57, 104, 158, 179, 195, 205, 221
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	233, 246
EarI	CTCTTC	2 cut(s)	233, 246
Eco24I	GRGCYC	1 cut(s)	197
Eco57I	CTGAAG	2 cut(s)	191, 257
EcoO109I	RGGNCCY	3 cut(s)	157, 193, 194
EcoRII	CCWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	1 cut(s)	97
FaiI	YATR	5 cut(s)	95, 112, 114, 176, 283
FatI	CATG	1 cut(s)	93
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	7 cut(s)	24, 27, 30, 33, 36, 75, 105
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	7 cut(s)	24, 27, 30, 33, 36, 75, 105
GluI	GCNGC	7 cut(s)	24, 27, 30, 33, 36, 75, 105
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	3 cut(s)	57, 158, 195
Hin1II	CATG	1 cut(s)	97
HinfI	GANTC	2 cut(s)	86, 131
Hpy188I	TCNGA	4 cut(s)	100, 153, 217, 237
Hpy188III	TCNNGA	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	148, 250
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	107, 174
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 32, 35, 155
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	46
LpnPI	CCDG	2 cut(s)	146, 173
Lsp1109I	GCAGC	5 cut(s)	41, 44, 47, 61, 91
LweI	GCATC	1 cut(s)	116
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	2 cut(s)	250, 263
MhlI	GDGCHC	2 cut(s)	170, 197
MlyI	GAGTC	2 cut(s)	80, 140
MnlI	CCTC	3 cut(s)	13, 79, 211
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	4 cut(s)	29, 32, 35, 155
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	1 cut(s)	195
PkrI	GCNGC	7 cut(s)	25, 28, 31, 34, 37, 76, 106
PleI	GAGTC	2 cut(s)	80, 139
PpsI	GAGTC	2 cut(s)	80, 139
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	195
PspOMI	GGGCCC	1 cut(s)	193
PspPI	GGNCC	3 cut(s)	157, 193, 194
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SatI	GCNGC	7 cut(s)	24, 27, 30, 33, 36, 75, 105
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	3 cut(s)	157, 193, 194
ScaI	AGTACT	1 cut(s)	244
SchI	GAGTC	2 cut(s)	80, 140
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	170, 197
SetI	ASST	2 cut(s)	106, 261
SfaNI	GCATC	1 cut(s)	116
SsiI	CCGC	2 cut(s)	23, 26
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	49, 84
TatI	WGTACW	1 cut(s)	242
TauI	GCSGC	2 cut(s)	26, 29
TseI	GCWGC	5 cut(s)	29, 32, 35, 74, 104
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.