Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010881

Physical Location & Seq

Genomic Coordinates Forward (+)

15370206 .. 15371689

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAGTCTCTTCTCACCCAAAACCATTAACAGGGCCGGAGTGATTCCACCGGCAACGCCCGATATCAAAGCTGCAGCATATGGCAATGATGGGAATGAGTCTCTTGATTTCAAGGCTCCTTGTTGTGGGGGATCAGACTGTGTGCATCCGTTTGTAATTTTGCAGAATTGTATTATAGCTAATCCAGCTGCCTTTTATAACGACATTTCAGAGGAAGATGGAGTTAAGAAGGAGGAAAACCTGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006605 GO:0006625 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072662 GO:0072663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

82

Amino Acids

8.72

Weight (kDa)

4.5

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23395
fragaria_vesca	FvH4_4g37330 FvH4_4g37330 FvH4_4g37330
malus_domestica	MD13G1001100.v1.1
prunus_persica	Prupe.1G351600_v2.0.a1
pyrus_communis	pycom13g00080 pycom13g19140
rosa_chinensis	RchiOBHm_Chr4g0447181
rosa_laevigata	RLG00000005598
rosa_multiflora	Rmu_ssc0000224.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387560
rosa_rugosa	Rorug04G0378900
rosa_samantha	Rh4AG440000 Rh4BG449100 Rh4CG466100 Rh4DG447500 Rh5BG163900
rosa_wichuraiana	Rw4G037650 Rw7G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AclWI	GGATC	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	30, 125
AgsI	TTSAA	1 cut(s)	112
AluBI	AGCT	3 cut(s)	71, 179, 188
AluI	AGCT	3 cut(s)	71, 179, 188
Alw26I	GTCTC	2 cut(s)	11, 105
AlwI	GGATC	1 cut(s)	139
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	3 cut(s)	71, 74, 188
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	6
BbvI	GCAGC	3 cut(s)	58, 86, 175
BccI	CCATC	2 cut(s)	83, 212
BcoDI	GTCTC	2 cut(s)	11, 105
BfaI	CTAG	1 cut(s)	247
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	3 cut(s)	72, 75, 189
BlsI	GCNGC	3 cut(s)	73, 76, 190
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 125
Bse118I	RCCGGY	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	2 cut(s)	30, 125
BseMI	GCAATG	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	58, 86, 175
BshFI	GGCC	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	36, 50
BslI	CCNNNNNNNGG	2 cut(s)	30, 125
BsmAI	GTCTC	2 cut(s)	11, 105
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssMI	GATC	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	2 cut(s)	11, 105
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	58, 86, 175
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	33
CviJI	RGCY	5 cut(s)	35, 71, 116, 179, 188
CviKI_1	RGCY	5 cut(s)	35, 71, 116, 179, 188
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	64
FaiI	YATR	4 cut(s)	79, 81, 176, 198
FauNDI	CATATG	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	72, 75, 189
FokI	GGATG	1 cut(s)	132
Fsp4HI	GCNGC	3 cut(s)	72, 75, 189
FspBI	CTAG	1 cut(s)	247
GluI	GCNGC	3 cut(s)	72, 75, 189
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	2 cut(s)	36, 50
HinfI	GANTC	3 cut(s)	4, 43, 98
HpaII	CCGG	2 cut(s)	36, 50
HphI	GGTGA	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	136, 211
Hpy188III	TCNNGA	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	3 cut(s)	74, 145, 163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	4 cut(s)	16, 49, 63, 198
Lsp1109I	GCAGC	3 cut(s)	58, 86, 175
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	247
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	1 cut(s)	227
MluCI	AATT	2 cut(s)	156, 166
MlyI	GAGTC	2 cut(s)	13, 107
MnlI	CCTC	2 cut(s)	205, 226
MseI	TTAA	2 cut(s)	27, 225
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	36, 50
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	3 cut(s)	73, 76, 190
PleI	GAGTC	2 cut(s)	12, 106
PpsI	GAGTC	2 cut(s)	12, 106
PsiI	TTATAA	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	27, 225
SatI	GCNGC	3 cut(s)	72, 75, 189
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	2 cut(s)	13, 107
SetI	ASST	5 cut(s)	73, 181, 190, 243, 248
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	1 cut(s)	72
SgeI	CNNG	8 cut(s)	43, 48, 62, 71, 116, 124, 132, 197
Sse9I	AATT	2 cut(s)	156, 166
SspMI	CTAG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	140
TasI	AATT	2 cut(s)	156, 166
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	27, 225
Tru9I	TTAA	2 cut(s)	27, 225
TseI	GCWGC	3 cut(s)	71, 74, 188
TspGWI	ACGGA	1 cut(s)	138
XspI	CTAG	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.