Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010881

Physical Location & Seq

Genomic Coordinates Reverse (-)

54947958 .. 54949411

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0378900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGCTGGTATTCTTCACCAGTGTCACTATGCTATGCATTCTTCTCTCTACTTTGCTAACACCTTGTGCTTATTCTCTGCAAATTCATGTGCAGCCATGGAGTAAAGTAGCTGCCAAGAAAGAAGTTCAAGTCTCTCAGTTCCATGCATTGCCAAGAAAGCTTCGACTCACTGAAATAGAAGCTACTGTTGTAGGACAAGAAGGCCAAGATTCAGCACCTAATCACAAAAAGCAGCCGAAGCAAAATGTTCTAGCTGCAGGTACTAAGCCATTGATCCATAAAGAAGAAGAAGGTGTAGAGGTGAAGCACAGAAGCAGTTCAGGGACATGGCAGGAATGGATGGAGAGCGACGACGAGGACACATCGGCGTTCTTCACAATGGACTATTCCAAAGTCAGAAGACGACGCCCCATACACAACAAGTCCTTGAAGCCAAAGGGCGTTAAAGTTGCAGCAGCAGCAACTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006605 GO:0006625 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072662 GO:0072663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

157

Amino Acids

17.64

Weight (kDa)

9.27

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23395
fragaria_vesca	FvH4_4g37330 FvH4_4g37330 FvH4_4g37330
malus_domestica	MD13G1001100.v1.1
prunus_persica	Prupe.1G351600_v2.0.a1
pyrus_communis	pycom13g00080 pycom13g19140
rosa_chinensis	RchiOBHm_Chr4g0447181
rosa_laevigata	RLG00000005598
rosa_multiflora	Rmu_ssc0000224.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387560
rosa_rugosa	Rorug04G0378900
rosa_samantha	Rh4AG440000 Rh4BG449100 Rh4CG466100 Rh4DG447500 Rh5BG163900
rosa_wichuraiana	Rw4G037650 Rw7G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	409
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	131, 433
AluBI	AGCT	5 cut(s)	7, 113, 163, 185, 257
AluI	AGCT	5 cut(s)	7, 113, 163, 185, 257
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	271
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	7 cut(s)	94, 113, 235, 257, 455, 458, 461
ApoI	RAATTY	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	319
AsuHPI	GGTGA	2 cut(s)	10, 316
BbsI	GAAGAC	1 cut(s)	409
BbvI	GCAGC	6 cut(s)	100, 106, 244, 247, 467, 470
BccI	CCATC	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	251
BisI	GCNGC	7 cut(s)	95, 114, 236, 258, 456, 459, 462
BlsI	GCNGC	7 cut(s)	96, 115, 237, 259, 457, 460, 463
BpiI	GAAGAC	1 cut(s)	409
BsaHI	GRCGYC	1 cut(s)	409
BsaJI	CCNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	6 cut(s)	100, 106, 244, 247, 467, 470
BsgI	GTGCAG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	276
Bsp19I	CCATGG	1 cut(s)	98
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	276
BssNI	GRCGYC	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	138, 267
BstDSI	CCRYGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	348
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 241, 461
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	6 cut(s)	100, 106, 244, 247, 467, 470
BstV2I	GAAGAC	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	28, 171
BveI	ACCTGC	1 cut(s)	251
CseI	GACGC	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	5 cut(s)	89, 99, 146, 330, 471
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	2 cut(s)	138, 267
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
DraIII	CACNNNGTG	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	98
EcoT22I	ATGCAT	2 cut(s)	41, 151
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	5 cut(s)	92, 102, 149, 333, 474
FaiI	YATR	9 cut(s)	32, 37, 90, 100, 147, 282, 331, 416, 472
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	5 cut(s)	88, 98, 145, 329, 470
Fnu4HI	GCNGC	7 cut(s)	95, 114, 236, 258, 456, 459, 462
FokI	GGATG	1 cut(s)	355
Fsp4HI	GCNGC	7 cut(s)	95, 114, 236, 258, 456, 459, 462
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	7 cut(s)	95, 114, 236, 258, 456, 459, 462
HaeIII	GGCC	1 cut(s)	207
HgaI	GACGC	1 cut(s)	417
Hin1I	GRCGYC	1 cut(s)	409
Hin1II	CATG	5 cut(s)	92, 102, 149, 333, 474
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	168, 212
HphI	GGTGA	2 cut(s)	10, 316
Hpy188I	TCNGA	1 cut(s)	401
Hpy99I	CGWCG	3 cut(s)	356, 359, 411
HpyAV	CCTTC	2 cut(s)	197, 287
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	6 cut(s)	39, 82, 94, 149, 260, 455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 241, 461
HpyF3I	CTNAG	2 cut(s)	138, 267
Hsp92I	GRCGYC	1 cut(s)	409
Hsp92II	CATG	5 cut(s)	92, 102, 149, 333, 474
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	34, 246, 309, 320
Lsp1109I	GCAGC	6 cut(s)	100, 106, 244, 247, 467, 470
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	6 cut(s)	7, 35, 299, 302, 367, 414
MluCI	AATT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	2 cut(s)	295, 352
Mph1103I	ATGCAT	2 cut(s)	41, 151
MroXI	GAANNNNTTC	1 cut(s)	319
MseI	TTAA	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	160, 241, 461
NcoI	CCATGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	5 cut(s)	92, 102, 149, 333, 474
NmuCI	GTSAC	1 cut(s)	25
NsiI	ATGCAT	2 cut(s)	41, 151
PctI	GAATGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	7 cut(s)	96, 115, 237, 259, 457, 460, 463
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PstI	CTGCAG	1 cut(s)	262
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	7 cut(s)	95, 114, 236, 258, 456, 459, 462
Sau3AI	GATC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	84
SspMI	CTAG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	28, 178
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	7 cut(s)	94, 113, 235, 257, 455, 458, 461
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	77
TspRI	CASTG	2 cut(s)	28, 178
XapI	RAATTY	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	319
XspI	CTAG	1 cut(s)	254
Zsp2I	ATGCAT	2 cut(s)	41, 151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.