Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010881

Physical Location & Seq

Genomic Coordinates Forward (+)

73129002 .. 73131295

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG440000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGTCAAGTTCAAAGCGAGGCGGCGGCAGCAGCAGCAGCAAATGTGGATCGACAAGGCCACGCCGTCTCCTCTGCTGCTTCCATCGACTCTCTCATTTCCGAAGCTGCATCATATGGCAATGATGGGAACGAGTCTCTTGATTTCAAGGCTCAGAAGGCCCTGGAGTGCCCCTGCATAGCCGACTTACAAAAGGGCCCTTGTGGGCTTCAGTTTTCTGAGGCTTTTGTTTGTTATCTGAAGAGTACTGTGGAAGAGAAGGGATCAGACTGTGTGCATCCGTTTGTAATTTTGCAGAATTGTATTAAAGCTAATCCAGATGCCTTTTCTAACAACATTTCAGAAGAAGATGGAGTTAAGAAAGAGGAAAAGCTGACCCAGGATTACAAAATTATCCCACCCTCGTGGTCCAAAGAATCCCCCAGTCCAAAATCCAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006605 GO:0006625 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072662 GO:0072663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

147

Amino Acids

15.68

Weight (kDa)

4.8

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23395
fragaria_vesca	FvH4_4g37330 FvH4_4g37330 FvH4_4g37330
malus_domestica	MD13G1001100.v1.1
prunus_persica	Prupe.1G351600_v2.0.a1
pyrus_communis	pycom13g00080 pycom13g19140
rosa_chinensis	RchiOBHm_Chr4g0447181
rosa_laevigata	RLG00000005598
rosa_multiflora	Rmu_ssc0000224.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387560
rosa_rugosa	Rorug04G0378900
rosa_samantha	Rh4AG440000 Rh4BG449100 Rh4CG466100 Rh4DG447500 Rh5BG163900
rosa_wichuraiana	Rw4G037650 Rw7G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	23, 26
AclWI	GGATC	2 cut(s)	57, 271
AcuI	CTGAAG	2 cut(s)	194, 260
AfaI	GTAC	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	14, 148
AjnI	CCWGG	2 cut(s)	162, 378
AleI	CACNNNNGTG	1 cut(s)	403
AluBI	AGCT	4 cut(s)	107, 311, 373, 439
AluI	AGCT	4 cut(s)	107, 311, 373, 439
Alw26I	GTCTC	2 cut(s)	73, 141
AlwI	GGATC	2 cut(s)	57, 271
AoxI	GGCC	3 cut(s)	58, 159, 196
ApaI	GGGCCC	1 cut(s)	200
ApeKI	GCWGC	6 cut(s)	29, 32, 35, 38, 77, 107
AspS9I	GGNCC	4 cut(s)	160, 196, 197, 408
AvaII	GGWCC	1 cut(s)	408
BaeGI	GKGCMC	2 cut(s)	173, 200
BanII	GRGCYC	1 cut(s)	200
BauI	CACGAG	1 cut(s)	403
BbvI	GCAGC	6 cut(s)	41, 44, 47, 50, 64, 94
BccI	CCATC	3 cut(s)	92, 119, 344
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	164, 380
BcoDI	GTCTC	2 cut(s)	73, 141
BfmI	CTRYAG	1 cut(s)	440
BisI	GCNGC	8 cut(s)	24, 27, 30, 33, 36, 39, 78, 108
BlsI	GCNGC	8 cut(s)	25, 28, 31, 34, 37, 40, 79, 109
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	2 cut(s)	164, 380
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	4 cut(s)	160, 196, 197, 408
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	164, 380
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	3 cut(s)	119, 286, 310
BmuI	ACTGGG	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	162, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	164, 380
BseDI	CCNNGG	2 cut(s)	162, 378
BseGI	GGATG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	167, 210
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	61
BseSI	GKGCMC	2 cut(s)	173, 200
BseXI	GCAGC	6 cut(s)	41, 44, 47, 50, 64, 94
BshFI	GGCC	3 cut(s)	60, 161, 198
BsmAI	GTCTC	2 cut(s)	73, 141
BsmBI	CGTCTC	1 cut(s)	73
BsnI	GGCC	3 cut(s)	60, 161, 198
Bsp120I	GGGCCC	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	173, 200
Bsp143I	GATC	2 cut(s)	49, 263
BspACI	CCGC	2 cut(s)	23, 26
BspANI	GGCC	3 cut(s)	60, 161, 198
BspCNI	CTCAG	2 cut(s)	166, 211
BspLI	GGNNCC	1 cut(s)	198
BspPI	GGATC	2 cut(s)	57, 271
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	162, 378
BssMI	GATC	2 cut(s)	49, 263
BssSI	CACGAG	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	403
Bst2UI	CCWGG	2 cut(s)	164, 380
Bst4CI	ACNGT	2 cut(s)	250, 272
Bst6I	CTCTTC	2 cut(s)	236, 249
BstDEI	CTNAG	2 cut(s)	153, 219
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	2 cut(s)	52, 266
BstMAI	GTCTC	2 cut(s)	73, 141
BstMBI	GATC	2 cut(s)	49, 263
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 32, 35, 38, 158
BstNI	CCWGG	2 cut(s)	164, 380
BstSCI	CCNGG	2 cut(s)	162, 378
BstSFI	CTRYAG	1 cut(s)	440
BstSLI	GKGCMC	2 cut(s)	173, 200
BstV1I	GCAGC	6 cut(s)	41, 44, 47, 50, 64, 94
BstXI	CCANNNNNNTGG	1 cut(s)	405
BsuRI	GGCC	3 cut(s)	60, 161, 198
BtsCI	GGATG	1 cut(s)	277
Cfr13I	GGNCC	4 cut(s)	160, 196, 197, 408
Csp6I	GTAC	1 cut(s)	246
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	2 cut(s)	153, 219
DpnI	GATC	2 cut(s)	51, 265
DpnII	GATC	2 cut(s)	49, 263
Eam1104I	CTCTTC	2 cut(s)	236, 249
EarI	CTCTTC	2 cut(s)	236, 249
Eco24I	GRGCYC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	408
Eco57I	CTGAAG	2 cut(s)	194, 260
EcoO109I	RGGNCCY	3 cut(s)	160, 196, 197
EcoRII	CCWGG	2 cut(s)	162, 378
EcoT38I	GRGCYC	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	73
FaiI	YATR	3 cut(s)	115, 117, 179
FauNDI	CATATG	1 cut(s)	115
Fnu4HI	GCNGC	8 cut(s)	24, 27, 30, 33, 36, 39, 78, 108
FokI	GGATG	1 cut(s)	264
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	8 cut(s)	24, 27, 30, 33, 36, 39, 78, 108
GluI	GCNGC	8 cut(s)	24, 27, 30, 33, 36, 39, 78, 108
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	3 cut(s)	60, 161, 198
HinfI	GANTC	3 cut(s)	89, 134, 416
Hpy188I	TCNGA	6 cut(s)	103, 156, 220, 240, 268, 343
Hpy188III	TCNNGA	2 cut(s)	140, 317
HpyAV	CCTTC	2 cut(s)	151, 253
HpyCH4III	ACNGT	2 cut(s)	250, 272
HpyCH4V	TGCA	4 cut(s)	110, 177, 277, 295
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 32, 35, 38, 158
HpyF3I	CTNAG	2 cut(s)	153, 219
Kzo9I	GATC	2 cut(s)	49, 263
LpnPI	CCDG	7 cut(s)	149, 176, 187, 330, 365, 392, 436
Lsp1109I	GCAGC	6 cut(s)	41, 44, 47, 50, 64, 94
LweI	GCATC	3 cut(s)	119, 286, 310
MalI	GATC	2 cut(s)	51, 265
MboI	GATC	2 cut(s)	49, 263
MboII	GAAGA	4 cut(s)	253, 266, 356, 359
MhlI	GDGCHC	2 cut(s)	173, 200
MluCI	AATT	3 cut(s)	288, 298, 390
MlyI	GAGTC	2 cut(s)	83, 143
MnlI	CCTC	5 cut(s)	13, 82, 214, 358, 412
MseI	TTAA	2 cut(s)	306, 357
MslI	CAYNNNNRTG	1 cut(s)	403
MspR9I	CCNGG	2 cut(s)	164, 380
MvaI	CCWGG	2 cut(s)	164, 380
MwoI	GCNNNNNNNGC	5 cut(s)	29, 32, 35, 38, 158
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	2 cut(s)	49, 263
NlaIV	GGNNCC	1 cut(s)	198
OliI	CACNNNNGTG	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	8 cut(s)	25, 28, 31, 34, 37, 40, 79, 109
PleI	GAGTC	2 cut(s)	83, 142
PpsI	GAGTC	2 cut(s)	83, 142
Psp6I	CCWGG	2 cut(s)	162, 378
PspGI	CCWGG	2 cut(s)	162, 378
PspN4I	GGNNCC	1 cut(s)	198
PspOMI	GGGCCC	1 cut(s)	196
PspPI	GGNCC	4 cut(s)	160, 196, 197, 408
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	306, 357
SatI	GCNGC	8 cut(s)	24, 27, 30, 33, 36, 39, 78, 108
Sau3AI	GATC	2 cut(s)	49, 263
Sau96I	GGNCC	4 cut(s)	160, 196, 197, 408
ScaI	AGTACT	1 cut(s)	247
SchI	GAGTC	2 cut(s)	83, 143
ScrFI	CCNGG	2 cut(s)	164, 380
SduI	GDGCHC	2 cut(s)	173, 200
SetI	ASST	4 cut(s)	109, 313, 375, 441
SfaNI	GCATC	3 cut(s)	119, 286, 310
SfcI	CTRYAG	1 cut(s)	440
SinI	GGWCC	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	403
Sse9I	AATT	3 cut(s)	288, 298, 390
SsiI	CCGC	2 cut(s)	23, 26
StyD4I	CCNGG	2 cut(s)	162, 378
TaaI	ACNGT	2 cut(s)	250, 272
TaqI	TCGA	2 cut(s)	52, 87
TasI	AATT	3 cut(s)	288, 298, 390
TatI	WGTACW	1 cut(s)	245
TauI	GCSGC	2 cut(s)	26, 29
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	306, 357
Tru9I	TTAA	2 cut(s)	306, 357
TseI	GCWGC	6 cut(s)	29, 32, 35, 38, 77, 107
TspGWI	ACGGA	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.