Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010881

Physical Location & Seq

Genomic Coordinates Forward (+)

32706293 .. 32708784

Gene Structure 2492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G351600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGACTTTATTAACTGGAAGATTGCTGCTGATTGTAGTAGCAGAGACGGAGAAGATGGGTCAAGTTCAAAGCGAGGCAGCCACAGTGGACCAACAAGGCCACTGGGGCTCCTCTGCTGTACCGTCCGCTTCTCCCTCCTTTTCTTCCATGGACTCTCTTATCGCAGAAGCTGCAACATATGGCAATGATGGGAATGAGTCTCTTGATGCCAAGGCTCAGAAGGCACTGGAATGCCCTTGCATAGCTAACTTACGAAGTGGCCCTTGTGGGCATCAGTTTGCAGAGGCTTTTGTCTGTTATCTTAAGAGTACGGTGGAAGAAAAGGGATCAGATTGCGTGCATCCGTTTGTAGTTTTGCAGAAGTGTATTAAAGCTAATCCTCATGCCTTTTCGAAAGACGTTTTAAAAGAAGATGAAGTCAAGAAAGAGGAAAAGCTGACACAGGATTACAAAATCATCCCCCCAAAATGGTCCAGGGAATCGCCAAGTCCAAAATCCAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006605 GO:0006625 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072662 GO:0072663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

169

Amino Acids

18.26

Weight (kDa)

5.82

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23395
fragaria_vesca	FvH4_4g37330 FvH4_4g37330 FvH4_4g37330
malus_domestica	MD13G1001100.v1.1
prunus_persica	Prupe.1G351600_v2.0.a1
pyrus_communis	pycom13g00080 pycom13g19140
rosa_chinensis	RchiOBHm_Chr4g0447181
rosa_laevigata	RLG00000005598
rosa_multiflora	Rmu_ssc0000224.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387560
rosa_rugosa	Rorug04G0378900
rosa_samantha	Rh4AG440000 Rh4BG449100 Rh4CG466100 Rh4DG447500 Rh5BG163900
rosa_wichuraiana	Rw4G037650 Rw7G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	1 cut(s)	334
AfaI	GTAC	2 cut(s)	120, 310
AfiI	CCNNNNNNNGG	1 cut(s)	468
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	473
AluBI	AGCT	5 cut(s)	170, 245, 374, 436, 502
AluI	AGCT	5 cut(s)	170, 245, 374, 436, 502
Alw26I	GTCTC	2 cut(s)	38, 204
AlwI	GGATC	1 cut(s)	334
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	97, 259
ApeKI	GCWGC	3 cut(s)	25, 77, 170
AspS9I	GGNCC	3 cut(s)	88, 260, 471
AsuII	TTCGAA	1 cut(s)	392
AvaII	GGWCC	2 cut(s)	88, 471
BanII	GRGCYC	1 cut(s)	110
BbvI	GCAGC	3 cut(s)	12, 89, 157
BccI	CCATC	2 cut(s)	49, 182
BciT130I	CCWGG	1 cut(s)	475
BcoDI	GTCTC	2 cut(s)	38, 204
BfrI	CTTAAG	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	105
BisI	GCNGC	3 cut(s)	26, 78, 171
BlsI	GCNGC	3 cut(s)	27, 79, 172
Bme1390I	CCNGG	1 cut(s)	475
Bme18I	GGWCC	2 cut(s)	88, 471
BmgT120I	GGNCC	3 cut(s)	88, 260, 471
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	475
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	3 cut(s)	196, 280, 349
BmuI	ACTGGG	1 cut(s)	112
Bpu14I	TTCGAA	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	147, 210, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	468
Bse1I	ACTGG	3 cut(s)	19, 107, 231
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	475
BseDI	CCNNGG	3 cut(s)	147, 210, 474
BseGI	GGATG	2 cut(s)	340, 456
BseLI	CCNNNNNNNGG	1 cut(s)	468
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	3 cut(s)	19, 107, 231
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	12, 89, 157
BshFI	GGCC	2 cut(s)	99, 261
BslI	CCNNNNNNNGG	1 cut(s)	468
BsmAI	GTCTC	2 cut(s)	38, 204
BsmBI	CGTCTC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	99, 261
Bsp119I	TTCGAA	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	326
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	2 cut(s)	99, 261
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	334
BspT104I	TTCGAA	1 cut(s)	392
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	19, 107, 231
BssECI	CCNNGG	3 cut(s)	147, 210, 474
BssMI	GATC	1 cut(s)	326
BssT1I	CCWWGG	2 cut(s)	147, 210
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	3 cut(s)	85, 123, 313
BstAFI	CTTAAG	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	340, 456
BstKTI	GATC	1 cut(s)	329
BstMAI	GTCTC	2 cut(s)	38, 204
BstMBI	GATC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 170, 221
BstNI	CCWGG	1 cut(s)	475
BstSCI	CCNGG	1 cut(s)	473
BstV1I	GCAGC	3 cut(s)	12, 89, 157
BsuRI	GGCC	2 cut(s)	99, 261
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	340, 456
BtsIMutI	CAGTG	3 cut(s)	90, 100, 224
Cac8I	GCNNGC	1 cut(s)	338
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	88, 260, 471
Csp6I	GTAC	2 cut(s)	119, 309
CviAII	CATG	2 cut(s)	148, 383
CviQI	GTAC	2 cut(s)	119, 309
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
DraI	TTTAAA	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	147, 210
Eco24I	GRGCYC	1 cut(s)	110
Eco47I	GGWCC	2 cut(s)	88, 471
EcoRII	CCWGG	1 cut(s)	473
EcoT14I	CCWWGG	2 cut(s)	147, 210
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	2 cut(s)	147, 210
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	2 cut(s)	151, 386
FaiI	YATR	5 cut(s)	149, 178, 180, 242, 384
FalI	AAGNNNNNCTT	2 cut(s)	247, 279
FatI	CATG	2 cut(s)	147, 382
FauNDI	CATATG	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	26, 78, 171
FokI	GGATG	2 cut(s)	327, 443
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	3 cut(s)	26, 78, 171
GluI	GCNGC	3 cut(s)	26, 78, 171
HaeIII	GGCC	2 cut(s)	99, 261
Hin1II	CATG	2 cut(s)	151, 386
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	3 cut(s)	152, 197, 479
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	219, 331
Hpy188III	TCNNGA	2 cut(s)	203, 421
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	3 cut(s)	85, 123, 313
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	5 cut(s)	173, 240, 281, 340, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 170, 221
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	2 cut(s)	151, 386
Kzo9I	GATC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	5 cut(s)	88, 212, 428, 460, 487
Lsp1109I	GCAGC	3 cut(s)	12, 89, 157
LweI	GCATC	3 cut(s)	196, 280, 349
MaeII	ACGT	1 cut(s)	399
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	5 cut(s)	30, 64, 135, 329, 422
MhlI	GDGCHC	1 cut(s)	110
MlyI	GAGTC	2 cut(s)	146, 206
MnlI	CCTC	6 cut(s)	67, 121, 145, 277, 390, 421
MseI	TTAA	4 cut(s)	11, 303, 369, 404
MslI	CAYNNNNRTG	1 cut(s)	229
MspCI	CTTAAG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	475
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	475
MwoI	GCNNNNNNNGC	3 cut(s)	105, 170, 221
NcoI	CCATGG	1 cut(s)	147
NdeI	CATATG	1 cut(s)	178
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	2 cut(s)	151, 386
NlaIV	GGNNCC	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	392
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	27, 79, 172
PleI	GAGTC	2 cut(s)	146, 205
PpsI	GAGTC	2 cut(s)	146, 205
Psp6I	CCWGG	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	3 cut(s)	88, 260, 471
PstNI	CAGNNNCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	120, 310
RsaNI	GTAC	2 cut(s)	119, 309
RseI	CAYNNNNRTG	1 cut(s)	229
SaqAI	TTAA	4 cut(s)	11, 303, 369, 404
SatI	GCNGC	3 cut(s)	26, 78, 171
Sau3AI	GATC	1 cut(s)	326
Sau96I	GGNCC	3 cut(s)	88, 260, 471
SchI	GAGTC	2 cut(s)	146, 206
ScrFI	CCNGG	1 cut(s)	475
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	6 cut(s)	172, 247, 376, 402, 438, 504
SfaNI	GCATC	3 cut(s)	196, 280, 349
SfuI	TTCGAA	1 cut(s)	392
SinI	GGWCC	2 cut(s)	88, 471
SmiMI	CAYNNNNRTG	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SsiI	CCGC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	473
StyI	CCWWGG	2 cut(s)	147, 210
TaaI	ACNGT	3 cut(s)	85, 123, 313
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	1 cut(s)	392
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	4 cut(s)	11, 303, 369, 404
Tru9I	TTAA	4 cut(s)	11, 303, 369, 404
TscAI	CASTG	3 cut(s)	90, 107, 231
TseI	GCWGC	3 cut(s)	25, 77, 170
TspDTI	ATGAA	1 cut(s)	429
TspGWI	ACGGA	2 cut(s)	62, 333
TspRI	CASTG	3 cut(s)	90, 107, 231
Vha464I	CTTAAG	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	88, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.