Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010881

Physical Location & Seq

Genomic Coordinates Forward (+)

64167181 .. 64168862

Gene Structure 1682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G037650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGTCAAGTTCAAAGCGAGGCGGCGGCAGCAGCAGCAAATGTGGATCGACAAGGCCACGCCGTCTCCTCTGCTGCTTCCATCGACTCTCTCATTTCCGAAGCTGCATCATATGGCAATGATGGGAACGAGTCTCTTGATTTCAACGCTCAGAAGGCCCTGGAGTGCCCTTGCATAGCCGACTTACAAAAGGGCCCTTGTGGGCTTCAGTTTTCAGAGGCTTTTGTTTGTTATCTGAAGAGTACTGTGGAAGAGAAGGGATCAGACTGTGTGCATCCGTTTGTAATTTTGCAGAATTGTATTAAAGCTAATCCAGATGCCTTTTCTAACAACATTTCAGAAGAAGATGGAGTTAAGAAAGAGGAAAAGCTGACCCAGGATTACAAAATTATCCCACCCTCGTGGTCCAAAGAATCCCCCAATCCAAAATCCAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006605 GO:0006625 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072662 GO:0072663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

146

Amino Acids

15.63

Weight (kDa)

4.69

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23395
fragaria_vesca	FvH4_4g37330 FvH4_4g37330 FvH4_4g37330
malus_domestica	MD13G1001100.v1.1
prunus_persica	Prupe.1G351600_v2.0.a1
pyrus_communis	pycom13g00080 pycom13g19140
rosa_chinensis	RchiOBHm_Chr4g0447181
rosa_laevigata	RLG00000005598
rosa_multiflora	Rmu_ssc0000224.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387560
rosa_rugosa	Rorug04G0378900
rosa_samantha	Rh4AG440000 Rh4BG449100 Rh4CG466100 Rh4DG447500 Rh5BG163900
rosa_wichuraiana	Rw4G037650 Rw7G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	23, 26
AclWI	GGATC	2 cut(s)	54, 268
AcuI	CTGAAG	2 cut(s)	191, 257
AfaI	GTAC	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	14, 145
AjnI	CCWGG	2 cut(s)	159, 375
AleI	CACNNNNGTG	1 cut(s)	400
AluBI	AGCT	4 cut(s)	104, 308, 370, 436
AluI	AGCT	4 cut(s)	104, 308, 370, 436
Alw26I	GTCTC	2 cut(s)	70, 138
AlwI	GGATC	2 cut(s)	54, 268
AoxI	GGCC	3 cut(s)	55, 156, 193
ApaI	GGGCCC	1 cut(s)	197
ApeKI	GCWGC	5 cut(s)	29, 32, 35, 74, 104
AspS9I	GGNCC	4 cut(s)	157, 193, 194, 405
AvaII	GGWCC	1 cut(s)	405
BaeGI	GKGCMC	2 cut(s)	170, 197
BanII	GRGCYC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	400
BbvI	GCAGC	5 cut(s)	41, 44, 47, 61, 91
BccI	CCATC	3 cut(s)	89, 116, 341
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	161, 377
BcoDI	GTCTC	2 cut(s)	70, 138
BfmI	CTRYAG	1 cut(s)	437
BisI	GCNGC	7 cut(s)	24, 27, 30, 33, 36, 75, 105
BlsI	GCNGC	7 cut(s)	25, 28, 31, 34, 37, 76, 106
BmcAI	AGTACT	1 cut(s)	244
Bme1390I	CCNGG	2 cut(s)	161, 377
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	4 cut(s)	157, 193, 194, 405
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	2 cut(s)	161, 377
BmsI	GCATC	3 cut(s)	116, 283, 307
BpmI	CTGGAG	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	159, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bse3DI	GCAATG	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	161, 377
BseDI	CCNNGG	2 cut(s)	159, 375
BseGI	GGATG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	58
BseSI	GKGCMC	2 cut(s)	170, 197
BseXI	GCAGC	5 cut(s)	41, 44, 47, 61, 91
BshFI	GGCC	3 cut(s)	57, 158, 195
BsmAI	GTCTC	2 cut(s)	70, 138
BsmBI	CGTCTC	1 cut(s)	70
BsnI	GGCC	3 cut(s)	57, 158, 195
Bsp120I	GGGCCC	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	170, 197
Bsp143I	GATC	2 cut(s)	46, 260
BspACI	CCGC	2 cut(s)	23, 26
BspANI	GGCC	3 cut(s)	57, 158, 195
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	2 cut(s)	54, 268
BsrDI	GCAATG	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	159, 375
BssMI	GATC	2 cut(s)	46, 260
BssSI	CACGAG	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	400
Bst2UI	CCWGG	2 cut(s)	161, 377
Bst4CI	ACNGT	2 cut(s)	247, 269
Bst6I	CTCTTC	2 cut(s)	233, 246
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	2 cut(s)	49, 263
BstMAI	GTCTC	2 cut(s)	70, 138
BstMBI	GATC	2 cut(s)	46, 260
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 32, 35, 155
BstNI	CCWGG	2 cut(s)	161, 377
BstSCI	CCNGG	2 cut(s)	159, 375
BstSFI	CTRYAG	1 cut(s)	437
BstSLI	GKGCMC	2 cut(s)	170, 197
BstV1I	GCAGC	5 cut(s)	41, 44, 47, 61, 91
BstXI	CCANNNNNNTGG	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	57, 158, 195
BtsCI	GGATG	1 cut(s)	274
Cfr13I	GGNCC	4 cut(s)	157, 193, 194, 405
Csp6I	GTAC	1 cut(s)	243
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	48, 262
DpnII	GATC	2 cut(s)	46, 260
Eam1104I	CTCTTC	2 cut(s)	233, 246
EarI	CTCTTC	2 cut(s)	233, 246
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	405
Eco57I	CTGAAG	2 cut(s)	191, 257
EcoO109I	RGGNCCY	3 cut(s)	157, 193, 194
EcoRII	CCWGG	2 cut(s)	159, 375
EcoT38I	GRGCYC	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	70
FaiI	YATR	3 cut(s)	112, 114, 176
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	7 cut(s)	24, 27, 30, 33, 36, 75, 105
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	7 cut(s)	24, 27, 30, 33, 36, 75, 105
GluI	GCNGC	7 cut(s)	24, 27, 30, 33, 36, 75, 105
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	3 cut(s)	57, 158, 195
HinfI	GANTC	3 cut(s)	86, 131, 413
Hpy188I	TCNGA	6 cut(s)	100, 153, 217, 237, 265, 340
Hpy188III	TCNNGA	2 cut(s)	137, 314
HpyAV	CCTTC	2 cut(s)	148, 250
HpyCH4III	ACNGT	2 cut(s)	247, 269
HpyCH4V	TGCA	4 cut(s)	107, 174, 274, 292
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 32, 35, 155
HpyF3I	CTNAG	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	46, 260
LpnPI	CCDG	5 cut(s)	146, 173, 327, 362, 389
Lsp1109I	GCAGC	5 cut(s)	41, 44, 47, 61, 91
LweI	GCATC	3 cut(s)	116, 283, 307
MalI	GATC	2 cut(s)	48, 262
MboI	GATC	2 cut(s)	46, 260
MboII	GAAGA	4 cut(s)	250, 263, 353, 356
MhlI	GDGCHC	2 cut(s)	170, 197
MluCI	AATT	3 cut(s)	285, 295, 387
MlyI	GAGTC	2 cut(s)	80, 140
MnlI	CCTC	5 cut(s)	13, 79, 211, 355, 409
MseI	TTAA	2 cut(s)	303, 354
MslI	CAYNNNNRTG	1 cut(s)	400
MspR9I	CCNGG	2 cut(s)	161, 377
MvaI	CCWGG	2 cut(s)	161, 377
MwoI	GCNNNNNNNGC	4 cut(s)	29, 32, 35, 155
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	2 cut(s)	46, 260
NlaIV	GGNNCC	1 cut(s)	195
OliI	CACNNNNGTG	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	7 cut(s)	25, 28, 31, 34, 37, 76, 106
PleI	GAGTC	2 cut(s)	80, 139
PpsI	GAGTC	2 cut(s)	80, 139
Psp6I	CCWGG	2 cut(s)	159, 375
PspGI	CCWGG	2 cut(s)	159, 375
PspN4I	GGNNCC	1 cut(s)	195
PspOMI	GGGCCC	1 cut(s)	193
PspPI	GGNCC	4 cut(s)	157, 193, 194, 405
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	400
SaqAI	TTAA	2 cut(s)	303, 354
SatI	GCNGC	7 cut(s)	24, 27, 30, 33, 36, 75, 105
Sau3AI	GATC	2 cut(s)	46, 260
Sau96I	GGNCC	4 cut(s)	157, 193, 194, 405
ScaI	AGTACT	1 cut(s)	244
SchI	GAGTC	2 cut(s)	80, 140
ScrFI	CCNGG	2 cut(s)	161, 377
SduI	GDGCHC	2 cut(s)	170, 197
SetI	ASST	4 cut(s)	106, 310, 372, 438
SfaNI	GCATC	3 cut(s)	116, 283, 307
SfcI	CTRYAG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	400
Sse9I	AATT	3 cut(s)	285, 295, 387
SsiI	CCGC	2 cut(s)	23, 26
StyD4I	CCNGG	2 cut(s)	159, 375
TaaI	ACNGT	2 cut(s)	247, 269
TaqI	TCGA	2 cut(s)	49, 84
TasI	AATT	3 cut(s)	285, 295, 387
TatI	WGTACW	1 cut(s)	242
TauI	GCSGC	2 cut(s)	26, 29
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	303, 354
Tru9I	TTAA	2 cut(s)	303, 354
TseI	GCWGC	5 cut(s)	29, 32, 35, 74, 104
TspGWI	ACGGA	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	405
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.