Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010881

Physical Location & Seq

Genomic Coordinates Forward (+)

69578771 .. 69581946

Gene Structure 3176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG466100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGTCAAGTTCAAAGCGAGGCGGCAGCAGCAGCAAATGTGGATCGACAAGGCCACGGCGTCTCCTCTGCTGCTTCCATCGACTCTCTCATTTCCGAAGCTGCATCATATGGCAATGATGGGAATGAGTCTCTTGATTTCAAGGCTCAGAAGGCCCTGGAGTGCCCTTGCATAGCCGACTTACAAAAGGGCCCTTGTGGGCTTCAGTTTTCAGAGGCTTTTGTTTGTTATCTGAAGAGTACTGTGGAAGAGAAGGGATCAGACTGTGTGCATCCGTTTGTAATTTTGCAGAATTGTATTAAAGCTAATCCAGATGCCTTTTCTAACAACATTTCAGAAGAAGATGGAGTTAAGAAAGAGGAAAAGCTGACCCAGGATTACAAAATTATCCCACCCTCGTGGTCCAAAGAATCCCCCAGTCCAAAATCCAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006605 GO:0006625 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072662 GO:0072663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

145

Amino Acids

15.53

Weight (kDa)

4.8

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23395
fragaria_vesca	FvH4_4g37330 FvH4_4g37330 FvH4_4g37330
malus_domestica	MD13G1001100.v1.1
prunus_persica	Prupe.1G351600_v2.0.a1
pyrus_communis	pycom13g00080 pycom13g19140
rosa_chinensis	RchiOBHm_Chr4g0447181
rosa_laevigata	RLG00000005598
rosa_multiflora	Rmu_ssc0000224.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387560
rosa_rugosa	Rorug04G0378900
rosa_samantha	Rh4AG440000 Rh4BG449100 Rh4CG466100 Rh4DG447500 Rh5BG163900
rosa_wichuraiana	Rw4G037650 Rw7G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	2 cut(s)	51, 265
AcuI	CTGAAG	2 cut(s)	188, 254
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	14, 142
AjnI	CCWGG	2 cut(s)	156, 372
AleI	CACNNNNGTG	1 cut(s)	397
AluBI	AGCT	4 cut(s)	101, 305, 367, 433
AluI	AGCT	4 cut(s)	101, 305, 367, 433
Alw26I	GTCTC	2 cut(s)	67, 135
AlwI	GGATC	2 cut(s)	51, 265
AoxI	GGCC	3 cut(s)	52, 153, 190
ApaI	GGGCCC	1 cut(s)	194
ApeKI	GCWGC	5 cut(s)	26, 29, 32, 71, 101
AspS9I	GGNCC	4 cut(s)	154, 190, 191, 402
AvaII	GGWCC	1 cut(s)	402
BaeGI	GKGCMC	2 cut(s)	167, 194
BanII	GRGCYC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	397
BbvI	GCAGC	5 cut(s)	38, 41, 44, 58, 88
BccI	CCATC	3 cut(s)	86, 113, 338
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	158, 374
BcoDI	GTCTC	2 cut(s)	67, 135
BfmI	CTRYAG	1 cut(s)	434
BisI	GCNGC	6 cut(s)	24, 27, 30, 33, 72, 102
BlsI	GCNGC	6 cut(s)	25, 28, 31, 34, 73, 103
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	158, 374
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	4 cut(s)	154, 190, 191, 402
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	2 cut(s)	158, 374
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	3 cut(s)	113, 280, 304
BmuI	ACTGGG	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	55, 156, 372
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse1I	ACTGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	2 cut(s)	158, 374
BseDI	CCNNGG	3 cut(s)	55, 156, 372
BseGI	GGATG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	417
BseRI	GAGGAG	1 cut(s)	55
BseSI	GKGCMC	2 cut(s)	167, 194
BseXI	GCAGC	5 cut(s)	38, 41, 44, 58, 88
BshFI	GGCC	3 cut(s)	54, 155, 192
BsmAI	GTCTC	2 cut(s)	67, 135
BsmBI	CGTCTC	1 cut(s)	67
BsnI	GGCC	3 cut(s)	54, 155, 192
Bsp120I	GGGCCC	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	167, 194
Bsp143I	GATC	2 cut(s)	43, 257
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	3 cut(s)	54, 155, 192
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	2 cut(s)	51, 265
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	3 cut(s)	55, 156, 372
BssMI	GATC	2 cut(s)	43, 257
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	397
Bst2BI	CACGAG	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	158, 374
Bst4CI	ACNGT	2 cut(s)	244, 266
Bst6I	CTCTTC	2 cut(s)	230, 243
BstACI	GRCGYC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	2 cut(s)	46, 260
BstMAI	GTCTC	2 cut(s)	67, 135
BstMBI	GATC	2 cut(s)	43, 257
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 32, 152
BstNI	CCWGG	2 cut(s)	158, 374
BstSCI	CCNGG	2 cut(s)	156, 372
BstSFI	CTRYAG	1 cut(s)	434
BstSLI	GKGCMC	2 cut(s)	167, 194
BstV1I	GCAGC	5 cut(s)	38, 41, 44, 58, 88
BstXI	CCANNNNNNTGG	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	54, 155, 192
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	271
Cfr13I	GGNCC	4 cut(s)	154, 190, 191, 402
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	240
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	2 cut(s)	45, 259
DpnII	GATC	2 cut(s)	43, 257
Eam1104I	CTCTTC	2 cut(s)	230, 243
EarI	CTCTTC	2 cut(s)	230, 243
Eco24I	GRGCYC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	402
Eco57I	CTGAAG	2 cut(s)	188, 254
EcoO109I	RGGNCCY	3 cut(s)	154, 190, 191
EcoRII	CCWGG	2 cut(s)	156, 372
EcoT38I	GRGCYC	1 cut(s)	194
Esp3I	CGTCTC	1 cut(s)	67
FaiI	YATR	3 cut(s)	109, 111, 173
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	6 cut(s)	24, 27, 30, 33, 72, 102
FokI	GGATG	1 cut(s)	258
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	6 cut(s)	24, 27, 30, 33, 72, 102
GluI	GCNGC	6 cut(s)	24, 27, 30, 33, 72, 102
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	3 cut(s)	54, 155, 192
HgaI	GACGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	60
HinfI	GANTC	3 cut(s)	83, 128, 410
Hpy188I	TCNGA	6 cut(s)	97, 150, 214, 234, 262, 337
Hpy188III	TCNNGA	2 cut(s)	134, 311
HpyAV	CCTTC	2 cut(s)	145, 247
HpyCH4III	ACNGT	2 cut(s)	244, 266
HpyCH4V	TGCA	4 cut(s)	104, 171, 271, 289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 32, 152
HpyF3I	CTNAG	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	43, 257
LpnPI	CCDG	6 cut(s)	143, 170, 324, 359, 386, 430
Lsp1109I	GCAGC	5 cut(s)	38, 41, 44, 58, 88
LweI	GCATC	3 cut(s)	113, 280, 304
MalI	GATC	2 cut(s)	45, 259
MboI	GATC	2 cut(s)	43, 257
MboII	GAAGA	4 cut(s)	247, 260, 350, 353
MhlI	GDGCHC	2 cut(s)	167, 194
MluCI	AATT	3 cut(s)	282, 292, 384
MlyI	GAGTC	2 cut(s)	77, 137
MnlI	CCTC	5 cut(s)	13, 76, 208, 352, 406
MseI	TTAA	2 cut(s)	300, 351
MslI	CAYNNNNRTG	1 cut(s)	397
MspR9I	CCNGG	2 cut(s)	158, 374
MvaI	CCWGG	2 cut(s)	158, 374
MwoI	GCNNNNNNNGC	3 cut(s)	29, 32, 152
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	2 cut(s)	43, 257
NlaIV	GGNNCC	1 cut(s)	192
OliI	CACNNNNGTG	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	6 cut(s)	25, 28, 31, 34, 73, 103
PleI	GAGTC	2 cut(s)	77, 136
PpsI	GAGTC	2 cut(s)	77, 136
Psp6I	CCWGG	2 cut(s)	156, 372
PspGI	CCWGG	2 cut(s)	156, 372
PspN4I	GGNNCC	1 cut(s)	192
PspOMI	GGGCCC	1 cut(s)	190
PspPI	GGNCC	4 cut(s)	154, 190, 191, 402
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	1 cut(s)	397
SaqAI	TTAA	2 cut(s)	300, 351
SatI	GCNGC	6 cut(s)	24, 27, 30, 33, 72, 102
Sau3AI	GATC	2 cut(s)	43, 257
Sau96I	GGNCC	4 cut(s)	154, 190, 191, 402
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	2 cut(s)	77, 137
ScrFI	CCNGG	2 cut(s)	158, 374
SduI	GDGCHC	2 cut(s)	167, 194
SetI	ASST	4 cut(s)	103, 307, 369, 435
SfaNI	GCATC	3 cut(s)	113, 280, 304
SfcI	CTRYAG	1 cut(s)	434
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	397
Sse9I	AATT	3 cut(s)	282, 292, 384
SsiI	CCGC	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	156, 372
TaaI	ACNGT	2 cut(s)	244, 266
TaqI	TCGA	2 cut(s)	46, 81
TasI	AATT	3 cut(s)	282, 292, 384
TatI	WGTACW	1 cut(s)	239
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	2 cut(s)	300, 351
Tru9I	TTAA	2 cut(s)	300, 351
TseI	GCWGC	5 cut(s)	26, 29, 32, 71, 101
TspGWI	ACGGA	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.