Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010881

Physical Location & Seq

Genomic Coordinates Forward (+)

33841513 .. 33844148

Gene Structure 2636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g37330.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGTCAAGTTCAAAGCGAGGCGGCAGCCGATGTGGATCCACAAGCTCACGGCGTCTCCTCCATCAACTCTCTCATTTCCGAAGCTGCAGCATATGGGAATGATGCAACTGAGTCTCTTGATGCCAAGGCTCAGAAGGCACTGGAGTGCCCTTGCATAGCTGACTTACGGAAGGGCCCTTGTGGGCTTCCATTTTCAGAGGCTTTTCTGTGTTATCTGAAGAGTACTGTGGCAGAGAAGGGATCAGACTGTGTGCATCCATTTGTAAATTTGCAGAATTGTATTAAAGCCAATCCAGATGCCTTTTCTAAGGAAGCAGAAGATGAAGTTAAGAAAGAGGAAAAGATGACTCAGGATTACAAAATCATCCCACCCTCATGGTCCAAAGAATCCTCAAGACCAAAATCCAATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006605 GO:0006625 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072662 GO:0072663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

139

Amino Acids

14.88

Weight (kDa)

4.92

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23395
fragaria_vesca	FvH4_4g37330 FvH4_4g37330 FvH4_4g37330
malus_domestica	MD13G1001100.v1.1
prunus_persica	Prupe.1G351600_v2.0.a1
pyrus_communis	pycom13g00080 pycom13g19140
rosa_chinensis	RchiOBHm_Chr4g0447181
rosa_laevigata	RLG00000005598
rosa_multiflora	Rmu_ssc0000224.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387560
rosa_rugosa	Rorug04G0378900
rosa_samantha	Rh4AG440000 Rh4BG449100 Rh4CG466100 Rh4DG447500 Rh5BG163900
rosa_wichuraiana	Rw4G037650 Rw7G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	3 cut(s)	32, 45, 250
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	14
AleI	CACNNNNGTG	1 cut(s)	145
AluBI	AGCT	3 cut(s)	47, 86, 161
AluI	AGCT	3 cut(s)	47, 86, 161
Alw26I	GTCTC	2 cut(s)	61, 120
AlwI	GGATC	3 cut(s)	32, 45, 250
AoxI	GGCC	1 cut(s)	175
ApaI	GGGCCC	1 cut(s)	179
ApeKI	GCWGC	3 cut(s)	26, 86, 89
ApoI	RAATTY	1 cut(s)	268
AspS9I	GGNCC	3 cut(s)	175, 176, 381
AvaII	GGWCC	1 cut(s)	381
BaeGI	GKGCMC	2 cut(s)	152, 179
BamHI	GGATCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	38, 73, 101
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	61, 120
BfmI	CTRYAG	2 cut(s)	87, 413
BisI	GCNGC	4 cut(s)	24, 27, 87, 90
BlsI	GCNGC	4 cut(s)	25, 28, 88, 91
BmcAI	AGTACT	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	3 cut(s)	175, 176, 381
BmiI	GGNNCC	2 cut(s)	39, 177
BmsI	GCATC	4 cut(s)	94, 112, 265, 289
BpmI	CTGGAG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	379
BsaBI	GATNNNNATC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bse1I	ACTGG	1 cut(s)	147
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	2 cut(s)	256, 366
BseJI	GATNNNNATC	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	102, 146, 365
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	49
BseSI	GKGCMC	2 cut(s)	152, 179
BseXI	GCAGC	3 cut(s)	38, 73, 101
BshFI	GGCC	1 cut(s)	177
BsmAI	GTCTC	2 cut(s)	61, 120
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	177
Bsp120I	GGGCCC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	152, 179
Bsp143I	GATC	2 cut(s)	37, 242
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	3 cut(s)	103, 145, 364
BspLI	GGNNCC	2 cut(s)	39, 177
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	3 cut(s)	32, 45, 250
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	37, 242
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	229, 251
Bst6I	CTCTTC	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	54
BstDEI	CTNAG	4 cut(s)	111, 132, 309, 351
BstF5I	GGATG	2 cut(s)	256, 366
BstKTI	GATC	2 cut(s)	40, 245
BstMAI	GTCTC	2 cut(s)	61, 120
BstMBI	GATC	2 cut(s)	37, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstSFI	CTRYAG	2 cut(s)	87, 413
BstSLI	GKGCMC	2 cut(s)	152, 179
BstV1I	GCAGC	3 cut(s)	38, 73, 101
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	256, 366
BtsIMutI	CAGTG	1 cut(s)	140
Cfr13I	GGNCC	3 cut(s)	175, 176, 381
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	1 cut(s)	378
CviJI	RGCY	9 cut(s)	29, 47, 86, 131, 161, 177, 187, 203, 290
CviKI_1	RGCY	9 cut(s)	29, 47, 86, 131, 161, 177, 187, 203, 290
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	4 cut(s)	111, 132, 309, 351
DpnI	GATC	2 cut(s)	39, 244
DpnII	GATC	2 cut(s)	37, 242
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	239
EcoO109I	RGGNCCY	2 cut(s)	175, 176
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	1 cut(s)	381
FaiI	YATR	4 cut(s)	94, 96, 158, 379
FatI	CATG	1 cut(s)	377
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	4 cut(s)	24, 27, 87, 90
FokI	GGATG	2 cut(s)	243, 353
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	4 cut(s)	24, 27, 87, 90
GluI	GCNGC	4 cut(s)	24, 27, 87, 90
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	177
HgaI	GACGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	381
HinfI	GANTC	3 cut(s)	113, 349, 389
Hpy188I	TCNGA	5 cut(s)	82, 135, 199, 219, 247
Hpy188III	TCNNGA	4 cut(s)	119, 296, 353, 396
HpyAV	CCTTC	3 cut(s)	130, 166, 232
HpyCH4III	ACNGT	2 cut(s)	229, 251
HpyCH4V	TGCA	5 cut(s)	89, 107, 156, 256, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	4 cut(s)	111, 132, 309, 351
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	37, 242
LpnPI	CCDG	3 cut(s)	128, 309, 338
Lsp1109I	GCAGC	3 cut(s)	38, 73, 101
LweI	GCATC	4 cut(s)	94, 112, 265, 289
MalI	GATC	2 cut(s)	39, 244
MboI	GATC	2 cut(s)	37, 242
MboII	GAAGA	2 cut(s)	232, 332
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	152, 179
MluCI	AATT	2 cut(s)	268, 277
MlyI	GAGTC	2 cut(s)	122, 343
MnlI	CCTC	6 cut(s)	13, 70, 193, 331, 385, 403
MseI	TTAA	2 cut(s)	285, 330
MslI	CAYNNNNRTG	2 cut(s)	145, 376
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	2 cut(s)	37, 242
NlaIII	CATG	1 cut(s)	381
NlaIV	GGNNCC	2 cut(s)	39, 177
OliI	CACNNNNGTG	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	25, 28, 88, 91
PleI	GAGTC	2 cut(s)	121, 343
PpsI	GAGTC	2 cut(s)	121, 343
PspN4I	GGNNCC	2 cut(s)	39, 177
PspOMI	GGGCCC	1 cut(s)	175
PspPI	GGNCC	3 cut(s)	175, 176, 381
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	2 cut(s)	145, 376
SaqAI	TTAA	2 cut(s)	285, 330
SatI	GCNGC	4 cut(s)	24, 27, 87, 90
Sau3AI	GATC	2 cut(s)	37, 242
Sau96I	GGNCC	3 cut(s)	175, 176, 381
ScaI	AGTACT	1 cut(s)	226
SchI	GAGTC	2 cut(s)	122, 343
SduI	GDGCHC	2 cut(s)	152, 179
SetI	ASST	3 cut(s)	49, 88, 163
SfaNI	GCATC	4 cut(s)	94, 112, 265, 289
SfcI	CTRYAG	2 cut(s)	87, 413
SinI	GGWCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	2 cut(s)	145, 376
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	2 cut(s)	268, 277
SsiI	CCGC	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	229, 251
TasI	AATT	2 cut(s)	268, 277
TatI	WGTACW	1 cut(s)	224
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	2 cut(s)	285, 330
Tru9I	TTAA	2 cut(s)	285, 330
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	3 cut(s)	26, 86, 89
TspDTI	ATGAA	1 cut(s)	339
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	1 cut(s)	268
ZrmI	AGTACT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.