Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010881

Physical Location & Seq

Genomic Coordinates Forward (+)

17082748 .. 17089721

Gene Structure 6974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG163900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGATTGGTCGTGGGCTCTGTTCATGTTCTGGAGCAGTTCAGCTGTGGATTTGTAAGACAGCAAGAAGCTGCAGATGGCAATGATGGGAATGAGTCTCTTGATTTCAAGGCTCAGAAGGCCCTGGAGTGCCCTTGCATAGCCGACTTACGAAAGGGCCCTTGTGGGCTTCAGTTTTCAGAGGCTTTTGTTTGTTATCTGAAGAGTAATGTGGAAGAGAAGGGATCAGACTGTGTGCATCCGTTTGTAATTTTGCAGAATTGTATTAAAGCTAATCCAGATGCCTTTTCTAACGACATTTCAGAAGAAGATGGAATTAAGAAGGAGGAAAACCTGACCCAGGATTACAAAATTATCCCACCCTCATGGTCCAAAGAATCCTCCAGTCCAAAATCCAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006605 GO:0006625 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072662 GO:0072663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

134

Amino Acids

14.72

Weight (kDa)

4.8

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23395
fragaria_vesca	FvH4_4g37330 FvH4_4g37330 FvH4_4g37330
malus_domestica	MD13G1001100.v1.1
prunus_persica	Prupe.1G351600_v2.0.a1
pyrus_communis	pycom13g00080 pycom13g19140
rosa_chinensis	RchiOBHm_Chr4g0447181
rosa_laevigata	RLG00000005598
rosa_multiflora	Rmu_ssc0000224.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387560
rosa_rugosa	Rorug04G0378900
rosa_samantha	Rh4AG440000 Rh4BG449100 Rh4CG466100 Rh4DG447500 Rh5BG163900
rosa_wichuraiana	Rw4G037650 Rw7G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	232
AcuI	CTGAAG	2 cut(s)	155, 221
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	123, 339
AluBI	AGCT	4 cut(s)	45, 71, 272, 400
AluI	AGCT	4 cut(s)	45, 71, 272, 400
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	2 cut(s)	120, 157
ApaI	GGGCCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	71
AspS9I	GGNCC	4 cut(s)	121, 157, 158, 369
AvaII	GGWCC	1 cut(s)	369
BaeGI	GKGCMC	2 cut(s)	134, 161
BanII	GRGCYC	2 cut(s)	20, 161
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	3 cut(s)	71, 80, 305
BciT130I	CCWGG	2 cut(s)	125, 341
BcoDI	GTCTC	1 cut(s)	102
BfmI	CTRYAG	2 cut(s)	72, 401
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	125, 341
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	4 cut(s)	121, 157, 158, 369
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	2 cut(s)	125, 341
BmsI	GCATC	2 cut(s)	247, 271
BpmI	CTGGAG	3 cut(s)	53, 146, 367
BsaJI	CCNNGG	2 cut(s)	123, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	125, 341
BseDI	CCNNGG	2 cut(s)	123, 339
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	384
BseSI	GKGCMC	2 cut(s)	134, 161
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	122, 159
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	122, 159
Bsp120I	GGGCCC	1 cut(s)	157
Bsp1286I	GDGCHC	3 cut(s)	20, 134, 161
Bsp143I	GATC	1 cut(s)	224
BspANI	GGCC	2 cut(s)	122, 159
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	123, 339
BssMI	GATC	1 cut(s)	224
Bst2UI	CCWGG	2 cut(s)	125, 341
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	2 cut(s)	197, 210
BstDEI	CTNAG	1 cut(s)	114
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	227
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	2 cut(s)	125, 341
BstSCI	CCNGG	2 cut(s)	123, 339
BstSFI	CTRYAG	2 cut(s)	72, 401
BstSLI	GKGCMC	2 cut(s)	134, 161
BstV1I	GCAGC	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	122, 159
BtsCI	GGATG	1 cut(s)	238
Cfr13I	GGNCC	4 cut(s)	121, 157, 158, 369
CviAII	CATG	2 cut(s)	26, 366
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
Eam1104I	CTCTTC	2 cut(s)	197, 210
EarI	CTCTTC	2 cut(s)	197, 210
Eco24I	GRGCYC	2 cut(s)	20, 161
Eco47I	GGWCC	1 cut(s)	369
Eco57I	CTGAAG	2 cut(s)	155, 221
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoO109I	RGGNCCY	3 cut(s)	121, 157, 158
EcoRII	CCWGG	2 cut(s)	123, 339
EcoT38I	GRGCYC	2 cut(s)	20, 161
FaeI	CATG	2 cut(s)	29, 369
FaiI	YATR	3 cut(s)	27, 140, 367
FatI	CATG	2 cut(s)	25, 365
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	225
FriOI	GRGCYC	2 cut(s)	20, 161
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
GsuI	CTGGAG	3 cut(s)	53, 146, 367
HaeIII	GGCC	2 cut(s)	122, 159
Hin1II	CATG	2 cut(s)	29, 369
HinfI	GANTC	2 cut(s)	95, 377
Hpy188I	TCNGA	5 cut(s)	117, 181, 201, 229, 304
Hpy188III	TCNNGA	3 cut(s)	32, 101, 278
HpyAV	CCTTC	3 cut(s)	112, 214, 316
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	4 cut(s)	74, 138, 238, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	29, 369
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	8 cut(s)	17, 110, 137, 291, 326, 347, 353, 397
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	2 cut(s)	247, 271
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MboII	GAAGA	4 cut(s)	214, 227, 317, 320
MhlI	GDGCHC	3 cut(s)	20, 134, 161
MluCI	AATT	4 cut(s)	249, 259, 315, 351
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	4 cut(s)	175, 319, 373, 391
MseI	TTAA	2 cut(s)	267, 318
MslI	CAYNNNNRTG	1 cut(s)	364
MspA1I	CMGCKG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	125, 341
MvaI	CCWGG	2 cut(s)	125, 341
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	29, 369
NlaIV	GGNNCC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	123, 339
PspGI	CCWGG	2 cut(s)	123, 339
PspN4I	GGNNCC	1 cut(s)	159
PspOMI	GGGCCC	1 cut(s)	157
PspPI	GGNCC	4 cut(s)	121, 157, 158, 369
PstI	CTGCAG	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	364
SaqAI	TTAA	2 cut(s)	267, 318
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	224
Sau96I	GGNCC	4 cut(s)	121, 157, 158, 369
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	125, 341
SduI	GDGCHC	3 cut(s)	20, 134, 161
SetI	ASST	5 cut(s)	47, 73, 274, 336, 402
SfaNI	GCATC	2 cut(s)	247, 271
SfcI	CTRYAG	2 cut(s)	72, 401
SinI	GGWCC	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	364
Sse9I	AATT	4 cut(s)	249, 259, 315, 351
StyD4I	CCNGG	2 cut(s)	123, 339
TaaI	ACNGT	1 cut(s)	233
TasI	AATT	4 cut(s)	249, 259, 315, 351
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	267, 318
Tru9I	TTAA	2 cut(s)	267, 318
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	14
TspGWI	ACGGA	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	369
XagI	CCTNNNNNAGG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.