Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010881

Physical Location & Seq

Genomic Coordinates Forward (+)

64656489 .. 64658712

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG447500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGTCAAGTTCAAAGCGAGGCGGCGGCGGCAGCAGCAGCAGCAAATGTGGATCGACAAGGCCACGCCGTCTCCTCTGCTGCTTCCATCGACTCTCTCATTTCCGAAGCTGCATCATATGGCAATGATGGGAACGAGTCTCTTGATTTCAAGGCTCAGAAGGCCCTGGAGTGCCCTTGCATAGCCGACTTACAAAAGGGCCCTTGTGGGCTTCAGTTTTCTGAGGCTTTTGTTTGTTATCTGAAGAGTACTGTGGAAGAGAAGGGATCAGACTGTGTGCATCCGTTTGTAATTTTGCAGAATTGTATTAAAGCTAATCCAGATGCCTTTTCTAACAACATTTCAGAAGAAGATGGAGTTAAGAAAGAGGAAAAGCTGACCCAGGATTACAAAATTATCCCACCCTCGTGGTCCAAAGAATCCCCCAGTCCAAAATCCAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006605 GO:0006625 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072662 GO:0072663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

148

Amino Acids

15.76

Weight (kDa)

4.8

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23395
fragaria_vesca	FvH4_4g37330 FvH4_4g37330 FvH4_4g37330
malus_domestica	MD13G1001100.v1.1
prunus_persica	Prupe.1G351600_v2.0.a1
pyrus_communis	pycom13g00080 pycom13g19140
rosa_chinensis	RchiOBHm_Chr4g0447181
rosa_laevigata	RLG00000005598
rosa_multiflora	Rmu_ssc0000224.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387560
rosa_rugosa	Rorug04G0378900
rosa_samantha	Rh4AG440000 Rh4BG449100 Rh4CG466100 Rh4DG447500 Rh5BG163900
rosa_wichuraiana	Rw4G037650 Rw7G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	23, 26, 29
AclWI	GGATC	2 cut(s)	60, 274
AcuI	CTGAAG	2 cut(s)	197, 263
AfaI	GTAC	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	14, 151
AjnI	CCWGG	2 cut(s)	165, 381
AleI	CACNNNNGTG	1 cut(s)	406
AluBI	AGCT	4 cut(s)	110, 314, 376, 442
AluI	AGCT	4 cut(s)	110, 314, 376, 442
Alw26I	GTCTC	2 cut(s)	76, 144
AlwI	GGATC	2 cut(s)	60, 274
AoxI	GGCC	3 cut(s)	61, 162, 199
ApaI	GGGCCC	1 cut(s)	203
ApeKI	GCWGC	6 cut(s)	32, 35, 38, 41, 80, 110
AspS9I	GGNCC	4 cut(s)	163, 199, 200, 411
AvaII	GGWCC	1 cut(s)	411
BaeGI	GKGCMC	2 cut(s)	176, 203
BanII	GRGCYC	1 cut(s)	203
BauI	CACGAG	1 cut(s)	406
BbvI	GCAGC	6 cut(s)	44, 47, 50, 53, 67, 97
BccI	CCATC	3 cut(s)	95, 122, 347
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	167, 383
BcoDI	GTCTC	2 cut(s)	76, 144
BfmI	CTRYAG	1 cut(s)	443
BisI	GCNGC	9 cut(s)	24, 27, 30, 33, 36, 39, 42, 81, 111
BlsI	GCNGC	9 cut(s)	25, 28, 31, 34, 37, 40, 43, 82, 112
BmcAI	AGTACT	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	167, 383
Bme18I	GGWCC	1 cut(s)	411
BmgT120I	GGNCC	4 cut(s)	163, 199, 200, 411
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	167, 383
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	3 cut(s)	122, 289, 313
BmuI	ACTGGG	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	165, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	2 cut(s)	167, 383
BseDI	CCNNGG	2 cut(s)	165, 381
BseGI	GGATG	1 cut(s)	280
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	170, 213
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	2 cut(s)	176, 203
BseXI	GCAGC	6 cut(s)	44, 47, 50, 53, 67, 97
BshFI	GGCC	3 cut(s)	63, 164, 201
BsmAI	GTCTC	2 cut(s)	76, 144
BsmBI	CGTCTC	1 cut(s)	76
BsnI	GGCC	3 cut(s)	63, 164, 201
Bsp120I	GGGCCC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	176, 203
Bsp143I	GATC	2 cut(s)	52, 266
BspACI	CCGC	3 cut(s)	23, 26, 29
BspANI	GGCC	3 cut(s)	63, 164, 201
BspCNI	CTCAG	2 cut(s)	169, 214
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	2 cut(s)	60, 274
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	165, 381
BssMI	GATC	2 cut(s)	52, 266
BssSI	CACGAG	1 cut(s)	406
Bst2BI	CACGAG	1 cut(s)	406
Bst2UI	CCWGG	2 cut(s)	167, 383
Bst4CI	ACNGT	2 cut(s)	253, 275
Bst6I	CTCTTC	2 cut(s)	239, 252
BstDEI	CTNAG	2 cut(s)	156, 222
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	55, 269
BstMAI	GTCTC	2 cut(s)	76, 144
BstMBI	GATC	2 cut(s)	52, 266
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 32, 35, 38, 41, 161
BstNI	CCWGG	2 cut(s)	167, 383
BstSCI	CCNGG	2 cut(s)	165, 381
BstSFI	CTRYAG	1 cut(s)	443
BstSLI	GKGCMC	2 cut(s)	176, 203
BstV1I	GCAGC	6 cut(s)	44, 47, 50, 53, 67, 97
BstXI	CCANNNNNNTGG	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	63, 164, 201
BtsCI	GGATG	1 cut(s)	280
Cfr13I	GGNCC	4 cut(s)	163, 199, 200, 411
Csp6I	GTAC	1 cut(s)	249
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	2 cut(s)	156, 222
DpnI	GATC	2 cut(s)	54, 268
DpnII	GATC	2 cut(s)	52, 266
Eam1104I	CTCTTC	2 cut(s)	239, 252
EarI	CTCTTC	2 cut(s)	239, 252
Eco24I	GRGCYC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	411
Eco57I	CTGAAG	2 cut(s)	197, 263
EcoO109I	RGGNCCY	3 cut(s)	163, 199, 200
EcoRII	CCWGG	2 cut(s)	165, 381
EcoT38I	GRGCYC	1 cut(s)	203
Esp3I	CGTCTC	1 cut(s)	76
FaiI	YATR	3 cut(s)	118, 120, 182
FauNDI	CATATG	1 cut(s)	118
Fnu4HI	GCNGC	9 cut(s)	24, 27, 30, 33, 36, 39, 42, 81, 111
FokI	GGATG	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	9 cut(s)	24, 27, 30, 33, 36, 39, 42, 81, 111
GluI	GCNGC	9 cut(s)	24, 27, 30, 33, 36, 39, 42, 81, 111
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	3 cut(s)	63, 164, 201
HinfI	GANTC	3 cut(s)	92, 137, 419
Hpy188I	TCNGA	6 cut(s)	106, 159, 223, 243, 271, 346
Hpy188III	TCNNGA	2 cut(s)	143, 320
HpyAV	CCTTC	2 cut(s)	154, 256
HpyCH4III	ACNGT	2 cut(s)	253, 275
HpyCH4V	TGCA	4 cut(s)	113, 180, 280, 298
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 32, 35, 38, 41, 161
HpyF3I	CTNAG	2 cut(s)	156, 222
Kzo9I	GATC	2 cut(s)	52, 266
LpnPI	CCDG	6 cut(s)	152, 179, 333, 368, 395, 439
Lsp1109I	GCAGC	6 cut(s)	44, 47, 50, 53, 67, 97
LweI	GCATC	3 cut(s)	122, 289, 313
MalI	GATC	2 cut(s)	54, 268
MboI	GATC	2 cut(s)	52, 266
MboII	GAAGA	4 cut(s)	256, 269, 359, 362
MhlI	GDGCHC	2 cut(s)	176, 203
MluCI	AATT	3 cut(s)	291, 301, 393
MlyI	GAGTC	2 cut(s)	86, 146
MnlI	CCTC	5 cut(s)	13, 85, 217, 361, 415
MseI	TTAA	2 cut(s)	309, 360
MslI	CAYNNNNRTG	1 cut(s)	406
MspR9I	CCNGG	2 cut(s)	167, 383
MvaI	CCWGG	2 cut(s)	167, 383
MwoI	GCNNNNNNNGC	6 cut(s)	29, 32, 35, 38, 41, 161
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	2 cut(s)	52, 266
NlaIV	GGNNCC	1 cut(s)	201
OliI	CACNNNNGTG	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	9 cut(s)	25, 28, 31, 34, 37, 40, 43, 82, 112
PleI	GAGTC	2 cut(s)	86, 145
PpsI	GAGTC	2 cut(s)	86, 145
Psp6I	CCWGG	2 cut(s)	165, 381
PspGI	CCWGG	2 cut(s)	165, 381
PspN4I	GGNNCC	1 cut(s)	201
PspOMI	GGGCCC	1 cut(s)	199
PspPI	GGNCC	4 cut(s)	163, 199, 200, 411
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	406
SaqAI	TTAA	2 cut(s)	309, 360
SatI	GCNGC	9 cut(s)	24, 27, 30, 33, 36, 39, 42, 81, 111
Sau3AI	GATC	2 cut(s)	52, 266
Sau96I	GGNCC	4 cut(s)	163, 199, 200, 411
ScaI	AGTACT	1 cut(s)	250
SchI	GAGTC	2 cut(s)	86, 146
ScrFI	CCNGG	2 cut(s)	167, 383
SduI	GDGCHC	2 cut(s)	176, 203
SetI	ASST	4 cut(s)	112, 316, 378, 444
SfaNI	GCATC	3 cut(s)	122, 289, 313
SfcI	CTRYAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	406
Sse9I	AATT	3 cut(s)	291, 301, 393
SsiI	CCGC	3 cut(s)	23, 26, 29
StyD4I	CCNGG	2 cut(s)	165, 381
TaaI	ACNGT	2 cut(s)	253, 275
TaqI	TCGA	2 cut(s)	55, 90
TasI	AATT	3 cut(s)	291, 301, 393
TatI	WGTACW	1 cut(s)	248
TauI	GCSGC	3 cut(s)	26, 29, 32
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	309, 360
Tru9I	TTAA	2 cut(s)	309, 360
TseI	GCWGC	6 cut(s)	32, 35, 38, 41, 80, 110
TspGWI	ACGGA	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	411
ZrmI	AGTACT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.