AT5G24390

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs.

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
8326607 .. 8329499
2893 bp
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UTR
Exon/CDS
Intron
AT5G24390.1

Sequence Viewer

Length: 1587 bp
ATGAAAGCTCTACGAAGAATACAAACGAAGTCTACGTTTCCAAATCCTTCTTCTCCGTCATCTCCGTGGACTCATTTGCGTTCTGCTTTCGTCCTTGTTACTTCTTCTTCTCCAGCTTCTTGTTCTTCTTCTTCTGATCCGCATCGGCTTAAATCGCCCTGGTCCCGGAGAAAAGGGAAAAAACCACTCACACTTCGCCGGTGGAGAAGATGTTTCACCCCTGAGGGTAGAATTCGGAATGGGGGAGTTGATTTGTTGAAGAAAGTTCGGACTAGAGGCATTGATCCTAGCATTCGGTCTGAGGTGTGGCCATTTCTTCTTGGAGTGTGTGATTTCAATAGTTCCGAAGAAGAGAGAGGTGCTACAAGAACTTGGAGAAGAAAAGTGTATGAGAGACTACGCAGGCAGTGCAAAAGGCTTCAAAAACAAAACAGTGGGACTTTTAAGTTAAACAAGATCAATAAAACTACTCAAGATGATGAGCATGATAGTTGGTCTCTTGCGCAAGACTCTGAAAGTTCATGTTCTGATGATGCTTGCAGCGTCCACGAGTCTCTTATCAGCGATAAAGACAACACGGAAGATATTGGCTACATGAGTGATGTCTCATGTACGCTTGACAGAGACTATAATGGTTCAAGACACCTGAACTCTGAGTCGTCAGACTCAGATTCATCTGATGAGAATGATTATGTTCAGGTCGCTCCTTCTTGTGAAGGGAAAGATGAAAACAGTACTTCTCCATCCAGCATATATATTTCTCGTACCAAAGAGGATTTTGTGACCTGGCAGCGTATTATCCGTCTAGACGCTCTCCGTGCAGATACAGAATGGACTCCATATTCTCAATCCCAAGCTTTGGTTTCAGAGAATAGGGCACGTCGTGCTGCTGAAGCAGTTGGTCTAAAGGATTACAGTTATTTGGAACCTTCGAAAATCTTTCACGCTGCACGGCTTGTTGCTGTTCTTGAAGCCTATGCCTTACATGACCCTGAAATTGGCTACTGCCAAGGAATGAGTGATCTTCTCTCCCCTATACTCTCAGTCATACCTGATGACTACGAGGCATTTTGGTGTTTCGTTGGGTTCATGAAGAAAGCTCGTCAGAATTTCAGAGTCGATGAGGTTGGGATCACAAGGCAACTGAACATAGTCTCAAAGATTATCAAATCCAAAGACTCACAACTCTACAAGCATCTTGAGAAAGTCAAGGCTGAAGACTGTTTCTTTGTTTACAGAATGGTTCTTGTTATGTTTAGAAGAGAGCTGACTCTGGAGCAAACATTGCATCTCTGGGAAGTGATTTGGGCAGACCAAGCTGCAATAAGAGCTGGGATGGGGAAATCTTCCTGGAGCAGACGAATAAAGCAGCGGGCTCCTCCCACGGAGGATTTGTTGCTGTACGTGGTAGCTGCTTCTGTGTTGCAAAGGAGGAAAGTCATAATAGAGAAGTACAGTAGCATGGAGGAGATTCTCCGAGAGTGCCACAATATGGTAGGGAAACTAGACGTGTGGAAGCTCTTAGACGATGCACACGACCTTATTGTTACCCTCCACGCCAAGATCGAACATTCTATCCCACAATAA

Protein Analysis

528

Amino Acids

60.63

Weight (kDa)

8.76

Isoelectric Point (pI)

61.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 318 - 439 1.4e-31 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 318 - 437 9.9e-17 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 504
AccB7I CCANNNNNTGG 2 cut(s) 859, 1492
AccI GTMKAC 1 cut(s) 32
AciI CCGC 2 cut(s) 140, 1372
AclWI GGATC 3 cut(s) 131, 278, 1139
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 2 cut(s) 231, 1108
AcuI CTGAAG 2 cut(s) 912, 1236
AdeI CACNNNGTG 1 cut(s) 884
AfaI GTAC 5 cut(s) 613, 736, 766, 1403, 1454
AfiI CCNNNNNNNGG 4 cut(s) 165, 859, 998, 1492
AflIII ACRYGT 1 cut(s) 1509
AgsI TTSAA 5 cut(s) 259, 337, 422, 639, 971
AjiI CACGTC 2 cut(s) 881, 1510
AjnI CCWGG 3 cut(s) 158, 785, 1349
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AloI GAACNNNNNNTCC 1 cut(s) 1560
AluBI AGCT 9 cut(s) 8, 116, 857, 1100, 1267, 1319, 1331, 1412, 1519
AluI AGCT 9 cut(s) 8, 116, 857, 1100, 1267, 1319, 1331, 1412, 1519
Alw26I GTCTC 6 cut(s) 388, 501, 558, 610, 618, 1159
AlwI GGATC 3 cut(s) 131, 278, 1139
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 7 cut(s) 540, 790, 887, 947, 1319, 1369, 1412
ApoI RAATTY 2 cut(s) 231, 1108
ArsI GACNNNNNNTTYG 2 cut(s) 1211, 1243
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 208
AsuII TTCGAA 1 cut(s) 932
AvaII GGWCC 1 cut(s) 162
AxyI CCTNAGG 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 880
BalI TGGCCA 1 cut(s) 310
BanII GRGCYC 1 cut(s) 1378
BauI CACGAG 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 1224
BbvI GCAGC 7 cut(s) 552, 802, 874, 934, 1306, 1381, 1399
BccI CCATC 2 cut(s) 751, 1330
BceAI ACGGC 1 cut(s) 968
BciT130I CCWGG 3 cut(s) 160, 787, 1351
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 6 cut(s) 388, 501, 558, 610, 618, 1159
BfaI CTAG 4 cut(s) 273, 288, 806, 1505
BisI GCNGC 7 cut(s) 541, 791, 888, 948, 1320, 1370, 1413
BlsI GCNGC 7 cut(s) 542, 792, 889, 949, 1321, 1371, 1414
BmcAI AGTACT 1 cut(s) 736
Bme1390I CCNGG 4 cut(s) 160, 166, 787, 1351
Bme18I GGWCC 1 cut(s) 162
BmgBI CACGTC 2 cut(s) 881, 1510
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 3 cut(s) 164, 927, 1377
BmrFI CCNGG 4 cut(s) 160, 166, 787, 1351
BmsI GCATC 5 cut(s) 151, 523, 1204, 1297, 1519
BpiI GAAGAC 1 cut(s) 1224
BpmI CTGGAG 3 cut(s) 96, 1295, 1372
Bpu14I TTCGAA 1 cut(s) 932
BpuEI CTTGAG 2 cut(s) 456, 1220
BpuMI CCSGG 1 cut(s) 166
BsaAI YACGTR 1 cut(s) 1405
BsaBI GATNNNNATC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 4 cut(s) 65, 158, 1009, 1383
BsaXI ACNNNNNCTCC 4 cut(s) 196, 226, 1379, 1409
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 859, 998, 1492
Bse118I RCCGGY 1 cut(s) 198
Bse21I CCTNAGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 1283
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 3 cut(s) 160, 787, 1351
BseDI CCNNGG 4 cut(s) 65, 158, 1009, 1383
BseGI GGATG 2 cut(s) 743, 1341
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 4 cut(s) 165, 859, 998, 1492
BseMI GCAATG 1 cut(s) 1283
BseMII CTCAG 5 cut(s) 213, 291, 645, 681, 1056
BseRI GAGGAG 2 cut(s) 1368, 1481
BseSI GKGCMC 1 cut(s) 880
BseXI GCAGC 7 cut(s) 552, 802, 874, 934, 1306, 1381, 1399
BseYI CCCAGC 1 cut(s) 1331
BsgI GTGCAG 2 cut(s) 840, 933
BshFI GGCC 1 cut(s) 310
BsiSI CCGG 2 cut(s) 166, 199
BslFI GGGAC 2 cut(s) 148, 451
BslI CCNNNNNNNGG 4 cut(s) 165, 859, 998, 1492
BsmAI GTCTC 6 cut(s) 388, 501, 558, 610, 618, 1159
BsmFI GGGAC 2 cut(s) 148, 451
BsmI GAATGC 1 cut(s) 291
BsnI GGCC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 501
Bsp119I TTCGAA 1 cut(s) 932
Bsp1286I GDGCHC 2 cut(s) 880, 1378
Bsp143I GATC 6 cut(s) 136, 283, 456, 1021, 1131, 1563
BspACI CCGC 2 cut(s) 140, 1372
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 5 cut(s) 214, 292, 646, 680, 1055
BspHI TCATGA 1 cut(s) 1089
BspLI GGNNCC 3 cut(s) 164, 927, 1377
BspPI GGATC 3 cut(s) 131, 278, 1139
BspT104I TTCGAA 1 cut(s) 932
BspTNI GGTCTC 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 1283
BsrFI RCCGGY 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 4 cut(s) 65, 158, 1009, 1383
BssMI GATC 6 cut(s) 136, 283, 456, 1021, 1131, 1563
BssSI CACGAG 1 cut(s) 548
BssT1I CCWWGG 1 cut(s) 1009
Bst2BI CACGAG 1 cut(s) 548
Bst2UI CCWGG 3 cut(s) 160, 787, 1351
Bst4CI ACNGT 5 cut(s) 434, 734, 917, 1223, 1457
Bst6I CTCTTC 2 cut(s) 345, 1255
BstAPI GCANNNNNTGC 3 cut(s) 408, 884, 1285
BstBAI YACGTR 1 cut(s) 1405
BstBI TTCGAA 1 cut(s) 932
BstC8I GCNNGC 3 cut(s) 404, 538, 1374
BstDEI CTNAG 6 cut(s) 222, 300, 654, 667, 1042, 1522
BstDSI CCRYGG 2 cut(s) 65, 1383
BstF5I GGATG 2 cut(s) 743, 1341
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 6 cut(s) 139, 286, 459, 1024, 1134, 1566
BstMAI GTCTC 6 cut(s) 388, 501, 558, 610, 618, 1159
BstMBI GATC 6 cut(s) 136, 283, 456, 1021, 1131, 1563
BstMWI GCNNNNNNNGC 8 cut(s) 154, 408, 818, 884, 893, 1285, 1316, 1328
BstNI CCWGG 3 cut(s) 160, 787, 1351
BstSCI CCNGG 4 cut(s) 158, 164, 785, 1349
BstSLI GKGCMC 1 cut(s) 880
BstV1I GCAGC 7 cut(s) 552, 802, 874, 934, 1306, 1381, 1399
BstV2I GAAGAC 1 cut(s) 1224
Bsu36I CCTNAGG 1 cut(s) 222
BsuRI GGCC 1 cut(s) 310
BtgI CCRYGG 2 cut(s) 65, 1383
BtrI CACGTC 2 cut(s) 881, 1510
BtsCI GGATG 2 cut(s) 743, 1341
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 2 cut(s) 413, 439
Cac8I GCNNGC 3 cut(s) 404, 538, 1374
CciI TCATGA 1 cut(s) 1089
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 2 cut(s) 532, 818
Csp6I GTAC 5 cut(s) 612, 735, 765, 1402, 1453
CviAII CATG 7 cut(s) 485, 522, 595, 609, 986, 1090, 1462
CviQI GTAC 5 cut(s) 612, 735, 765, 1402, 1453
DdeI CTNAG 6 cut(s) 222, 300, 654, 667, 1042, 1522
DpnI GATC 6 cut(s) 138, 285, 458, 1023, 1133, 1565
DpnII GATC 6 cut(s) 136, 283, 456, 1021, 1131, 1563
DraIII CACNNNGTG 1 cut(s) 884
EaeI YGGCCR 1 cut(s) 308
Eam1104I CTCTTC 2 cut(s) 345, 1255
EarI CTCTTC 2 cut(s) 345, 1255
Eco130I CCWWGG 1 cut(s) 1009
Eco24I GRGCYC 1 cut(s) 1378
Eco31I GGTCTC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 162
Eco57I CTGAAG 2 cut(s) 912, 1236
Eco81I CCTNAGG 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 231
EcoRII CCWGG 3 cut(s) 158, 785, 1349
EcoT14I CCWWGG 1 cut(s) 1009
EcoT38I GRGCYC 1 cut(s) 1378
ErhI CCWWGG 1 cut(s) 1009
FaeI CATG 7 cut(s) 488, 525, 598, 612, 989, 1093, 1465
FaqI GGGAC 2 cut(s) 148, 451
FatI CATG 7 cut(s) 484, 521, 594, 608, 985, 1089, 1461
FauI CCCGC 1 cut(s) 1365
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 7 cut(s) 541, 791, 888, 948, 1320, 1370, 1413
FokI GGATG 2 cut(s) 730, 1348
FriOI GRGCYC 1 cut(s) 1378
Fsp4HI GCNGC 7 cut(s) 541, 791, 888, 948, 1320, 1370, 1413
FspBI CTAG 4 cut(s) 273, 288, 806, 1505
FspI TGCGCA 1 cut(s) 504
GlaI GCGC 1 cut(s) 504
GluI GCNGC 7 cut(s) 541, 791, 888, 948, 1320, 1370, 1413
GsaI CCCAGC 1 cut(s) 1335
GsuI CTGGAG 3 cut(s) 96, 1295, 1372
HaeIII GGCC 1 cut(s) 310
HapII CCGG 2 cut(s) 166, 199
HgaI GACGC 2 cut(s) 532, 818
HhaI GCGC 1 cut(s) 505
Hin1II CATG 7 cut(s) 488, 525, 598, 612, 989, 1093, 1465
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HindIII AAGCTT 1 cut(s) 855
HpaII CCGG 2 cut(s) 166, 199
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 4 cut(s) 33, 69, 547, 1234
Hpy188III TCNNGA 7 cut(s) 473, 639, 806, 968, 1090, 1199, 1274
Hpy8I GTNNAC 4 cut(s) 33, 69, 547, 1234
Hpy99I CGWCG 1 cut(s) 885
HpyAV CCTTC 4 cut(s) 57, 710, 717, 939
HpyCH4III ACNGT 5 cut(s) 434, 734, 917, 1223, 1457
HpyCH4IV ACGT 4 cut(s) 35, 880, 1404, 1509
HpyCH4V TGCA 8 cut(s) 411, 540, 821, 950, 1288, 1322, 1426, 1532
HpyF10VI GCNNNNNNNGC 8 cut(s) 154, 408, 818, 884, 893, 1285, 1316, 1328
HpyF3I CTNAG 6 cut(s) 222, 300, 654, 667, 1042, 1522
HpySE526I ACGT 4 cut(s) 35, 880, 1404, 1509
Hsp92II CATG 7 cut(s) 488, 525, 598, 612, 989, 1093, 1465
HspAI GCGC 1 cut(s) 503
Kzo9I GATC 6 cut(s) 136, 283, 456, 1021, 1131, 1563
LmnI GCTCC 4 cut(s) 709, 1276, 1353, 1381
Lsp1109I GCAGC 7 cut(s) 552, 802, 874, 934, 1306, 1381, 1399
LweI GCATC 5 cut(s) 151, 523, 1204, 1297, 1519
MaeI CTAG 4 cut(s) 273, 288, 806, 1505
MaeII ACGT 4 cut(s) 35, 880, 1404, 1509
MaeIII GTNAC 3 cut(s) 97, 781, 1546
MalI GATC 6 cut(s) 138, 285, 458, 1023, 1133, 1565
MboI GATC 6 cut(s) 136, 283, 456, 1021, 1131, 1563
MhlI GDGCHC 2 cut(s) 880, 1378
MlsI TGGCCA 1 cut(s) 310
MluCI AATT 3 cut(s) 231, 996, 1108
MluNI TGGCCA 1 cut(s) 310
MlyI GAGTC 9 cut(s) 64, 503, 560, 659, 665, 829, 1125, 1172, 1264
Mox20I TGGCCA 1 cut(s) 310
MscI TGGCCA 1 cut(s) 310
MseI TTAA 3 cut(s) 150, 444, 449
MslI CAYNNNNRTG 2 cut(s) 64, 1072
Msp20I TGGCCA 1 cut(s) 310
MspA1I CMGCKG 1 cut(s) 1372
MspI CCGG 2 cut(s) 166, 199
MspR9I CCNGG 4 cut(s) 160, 166, 787, 1351
Mva1269I GAATGC 1 cut(s) 291
MvaI CCWGG 3 cut(s) 160, 787, 1351
MwoI GCNNNNNNNGC 8 cut(s) 154, 408, 818, 884, 893, 1285, 1316, 1328
NciI CCSGG 1 cut(s) 166
NdeII GATC 6 cut(s) 136, 283, 456, 1021, 1131, 1563
NlaIII CATG 7 cut(s) 488, 525, 598, 612, 989, 1093, 1465
NlaIV GGNNCC 3 cut(s) 164, 927, 1377
NmuCI GTSAC 1 cut(s) 781
NsbI TGCGCA 1 cut(s) 504
NspV TTCGAA 1 cut(s) 932
PagI TCATGA 1 cut(s) 1089
PcsI WCGNNNNNNNCGW 3 cut(s) 32, 1533, 1563
PctI GAATGC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 671, 1471
PflMI CCANNNNNTGG 2 cut(s) 859, 1492
PfoI TCCNGGA 2 cut(s) 164, 1349
PkrI GCNGC 7 cut(s) 542, 792, 889, 949, 1321, 1371, 1414
PleI GAGTC 9 cut(s) 64, 503, 559, 659, 664, 829, 1124, 1172, 1264
PpsI GAGTC 9 cut(s) 64, 503, 559, 659, 664, 829, 1124, 1172, 1264
Ppu21I YACGTR 1 cut(s) 1405
Psp6I CCWGG 3 cut(s) 158, 785, 1349
PspFI CCCAGC 1 cut(s) 1331
PspGI CCWGG 3 cut(s) 158, 785, 1349
PspN4I GGNNCC 3 cut(s) 164, 927, 1377
PspPI GGNCC 1 cut(s) 162
RsaI GTAC 5 cut(s) 613, 736, 766, 1403, 1454
RsaNI GTAC 5 cut(s) 612, 735, 765, 1402, 1453
RseI CAYNNNNRTG 2 cut(s) 64, 1072
SaqAI TTAA 3 cut(s) 150, 444, 449
SatI GCNGC 7 cut(s) 541, 791, 888, 948, 1320, 1370, 1413
Sau3AI GATC 6 cut(s) 136, 283, 456, 1021, 1131, 1563
Sau96I GGNCC 1 cut(s) 162
ScaI AGTACT 1 cut(s) 736
SchI GAGTC 9 cut(s) 64, 503, 560, 659, 665, 829, 1125, 1172, 1264
ScrFI CCNGG 4 cut(s) 160, 166, 787, 1351
SduI GDGCHC 2 cut(s) 880, 1378
SfaNI GCATC 5 cut(s) 151, 523, 1204, 1297, 1519
SfuI TTCGAA 1 cut(s) 932
SgrAI CRCCGGYG 1 cut(s) 198
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 2 cut(s) 64, 1072
SmlI CTYRAG 2 cut(s) 471, 1199
SmoI CTYRAG 2 cut(s) 471, 1199
Sse9I AATT 3 cut(s) 231, 996, 1108
SsiI CCGC 2 cut(s) 140, 1372
SspMI CTAG 4 cut(s) 273, 288, 806, 1505
StyD4I CCNGG 4 cut(s) 158, 164, 785, 1349
StyI CCWWGG 1 cut(s) 1009
TaaI ACNGT 5 cut(s) 434, 734, 917, 1223, 1457
TaiI ACGT 4 cut(s) 38, 883, 1407, 1512
TaqI TCGA 3 cut(s) 932, 1119, 1566
TaqII GACCGA 1 cut(s) 285
TasI AATT 3 cut(s) 231, 996, 1108
TatI WGTACW 2 cut(s) 734, 1452
TfiI GAWTC 2 cut(s) 671, 1471
Tru1I TTAA 3 cut(s) 150, 444, 449
Tru9I TTAA 3 cut(s) 150, 444, 449
TscAI CASTG 2 cut(s) 413, 439
TseFI GTSAC 1 cut(s) 781
TseI GCWGC 7 cut(s) 540, 790, 887, 947, 1319, 1369, 1412
Tsp45I GTSAC 1 cut(s) 781
TspDTI ATGAA 6 cut(s) 17, 510, 663, 741, 1078, 1106
TspGWI ACGGA 6 cut(s) 45, 54, 593, 791, 806, 1400
TspRI CASTG 2 cut(s) 413, 439
Van91I CCANNNNNTGG 2 cut(s) 859, 1492
VpaK11BI GGWCC 1 cut(s) 162
XapI RAATTY 2 cut(s) 231, 1108
XbaI TCTAGA 1 cut(s) 805
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 4 cut(s) 273, 288, 806, 1505
ZrmI AGTACT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.