Prupe.2G316200_v2.0.a1

GTPase-activating protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
29672237 .. 29676809
4573 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G316200.1

Sequence Viewer

Length: 1614 bp
ATGAGAGCTCTACGACGAAGTCACACTTCGTCGCCTTCGAGTTCAAATTCCTCTCCTTCTTCATCTTCGTCGTCGTCGTCTTCGTGGATTCATTTGCGTTCGGTTCTATTAGTTGTGTCCTCTTCCTCACCAGCTCATTGTTCTTCCTCTGATCGGACTCGTCTTAAGTCACCTTGGTCCCGCCGGAAAAGAAAACATGCCCTTGCAGCTCATCACTGGAGAAGTTTCTTTACACCAGATGGAAGGCTTCGCGATGGTGGAGTTAAGTTGGTGAAAAAAGTTCGCAGTGGAGGAGTTGATCCAAGTATTAGGGCAGAGGTTTGGCCATTCCTCCTTGGAGTCTATGATTTAAACAGTTCGAAAGAAGAACGAGATTTAGTAAGATCTCAGAAAAGAAAGGAATATGAGAAACTCCGCAGACAGTGCCGCCGAGTCATAAAGCGCATAAATGAGAGCTCTAAGTTGAATGGGGACAGTTGTAGTTTCACCCAGGATACAGATTCTCCCAGCTCTGAGGATGTGGTTAGTGCCAGGGACTCCCTTTCTAGTGAAGAAAGGATCCCAGATGTTGAATACTCAGATGACCCTTCTAGTGCATTGTTGGATGGAGATGATAGTTCAAGACGAAACACAAATGCTGATGCCAAAGTACTAAATTCAGACTCATCTGATTCAGACAGCTCTGAAGAACCTGAGGTGATTCAGACTTTCCCCTCAGGTGAAGGAAGGGAAGATGATGATCCTGATATGAGTTCCAAGGATGAATCTTCTCCCTCGAGAACAGAAGTCCAATCAAAGTTAAGCAGTGAGGATTTTGCCACATGGCAGCGGATCATACGCCTTGATGCTGTACGAACTAATTCAGACTGGATTCCGTACTCCCCATCTCAAGCTGAAGTGTCACAGGATAGAGCATGGCGTTCTGCTGAGGCTGTTGGGTTGAAGGATTACGATCACCTGGAGCCTTGTAGAATTTTCCATGCTGCTCGACTGGTTGCTATTCTTGAAGCATATGCACTCTATGACCCAGAAATCGGTTACTGCCAGGGTATGAGTGATCTACTTTCTCCTATAACTGCTGTAATGACAGAGGATCATGAGGCATTCTGGTGTTTTGTGGGTTTCATGAAGAAGGCTCGACATAATTTTAGGCTTGACGAGGTGGGGATTCGAAGGCAGTTGAGTATTGTTTCTAAAATTATTAAATGCAAGGACTCCCACCTATACAGGCACTTGGAGAAGCTCCAGGCAGAGGATTGCTTTTTTGTTTATCGGATGGTGGTTGTGCTATTTAGGAGGGAATTGACATTTGAACAGACAATATGCCTATGGGAGGTAATGTGGGCCGATCAAGCAGCCATAAGGGCTGGGATCGGAAAATCTGCCTGGAGCAGGATAAGGCAACGAGCCCCGCCAACAGATGATTTGTTACTTTATGCAATTGCAGCTTCAGTTTTGCAGAAGAGGAAACTGATAATAGAGAAGTATAGCAGCATGGACGAGATTATCAGGGAGTGCAATAGCATGTCTGGGCAACTTGATATATGGAAGCTCCTTGATGATGCACATTACTTGGTAGTAAACCTCCATGACAAGATAGAGCCATCCTTCTGA

Protein Analysis

538

Amino Acids

61.06

Weight (kDa)

6.43

Isoelectric Point (pI)

68.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 252
AciI CCGC 5 cut(s) 181, 415, 427, 829, 1412
AclWI GGATC 7 cut(s) 293, 553, 566, 734, 839, 1101, 1379
AcoI YGGCCR 1 cut(s) 323
AcsI RAATTY 3 cut(s) 46, 655, 972
AcuI CTGAAG 3 cut(s) 705, 915, 1434
AfaI GTAC 3 cut(s) 651, 852, 878
AfiI CCNNNNNNNGG 5 cut(s) 153, 1034, 1252, 1333, 1392
AflII CTTAAG 1 cut(s) 164
AgsI TTSAA 7 cut(s) 45, 466, 572, 621, 943, 1007, 1313
AjnI CCWGG 6 cut(s) 489, 530, 957, 1044, 1245, 1385
Alw21I GWGCWC 2 cut(s) 10, 458
AlwI GGATC 7 cut(s) 293, 553, 566, 734, 839, 1101, 1379
Ama87I CYCGRG 1 cut(s) 775
AoxI GGCC 2 cut(s) 323, 1344
ApeKI GCWGC 6 cut(s) 206, 826, 983, 1355, 1445, 1491
ApoI RAATTY 3 cut(s) 46, 655, 972
Asp700I GAANNNNTTC 1 cut(s) 859
AspLEI GCGC 1 cut(s) 444
AspS9I GGNCC 2 cut(s) 177, 1344
AsuHPI GGTGA 7 cut(s) 120, 162, 283, 478, 709, 731, 947
AsuII TTCGAA 2 cut(s) 359, 1171
AvaI CYCGRG 1 cut(s) 775
AvaII GGWCC 1 cut(s) 177
AxyI CCTNAGG 2 cut(s) 693, 715
BalI TGGCCA 1 cut(s) 325
BamHI GGATCC 1 cut(s) 558
BanII GRGCYC 3 cut(s) 10, 458, 1411
BarI GAAGNNNNNNTAC 2 cut(s) 214, 246
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 10, 458
BbvCI CCTCAGC 1 cut(s) 927
BbvI GCAGC 6 cut(s) 218, 838, 970, 1367, 1457, 1503
BccI CCATC 6 cut(s) 233, 248, 599, 892, 1270, 1612
BciT130I CCWGG 6 cut(s) 491, 532, 959, 1046, 1247, 1387
BciVI GTATCC 1 cut(s) 487
BfaI CTAG 2 cut(s) 546, 591
BfrI CTTAAG 1 cut(s) 164
BfuI GTATCC 1 cut(s) 487
BglI GCCNNNNNGGC 1 cut(s) 1364
BglII AGATCT 1 cut(s) 383
BisI GCNGC 7 cut(s) 207, 427, 827, 984, 1356, 1446, 1492
BlsI GCNGC 7 cut(s) 208, 428, 828, 985, 1357, 1447, 1493
BmcAI AGTACT 1 cut(s) 651
Bme1390I CCNGG 6 cut(s) 491, 532, 959, 1046, 1247, 1387
Bme18I GGWCC 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 775
BmgT120I GGNCC 2 cut(s) 177, 1344
BmiI GGNNCC 3 cut(s) 179, 560, 963
BmrFI CCNGG 6 cut(s) 491, 532, 959, 1046, 1247, 1387
BmsI GCATC 3 cut(s) 631, 835, 1552
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 4 cut(s) 238, 980, 1229, 1408
Bpu10I CCTNAGC 1 cut(s) 927
Bpu14I TTCGAA 2 cut(s) 359, 1171
BpuEI CTTGAG 1 cut(s) 873
BsaBI GATNNNNATC 2 cut(s) 738, 951
BsaJI CCNNGG 6 cut(s) 173, 334, 489, 531, 756, 1045
BsaXI ACNNNNNCTCC 4 cut(s) 487, 517, 1325, 1355
Bsc4I CCNNNNNNNGG 5 cut(s) 153, 1034, 1252, 1333, 1392
Bse1I ACTGG 3 cut(s) 221, 872, 996
Bse21I CCTNAGG 2 cut(s) 693, 715
Bse8I GATNNNNATC 2 cut(s) 738, 951
BseBI CCWGG 6 cut(s) 491, 532, 959, 1046, 1247, 1387
BseDI CCNNGG 6 cut(s) 173, 334, 489, 531, 756, 1045
BseGI GGATG 5 cut(s) 523, 610, 766, 1281, 1604
BseJI GATNNNNATC 2 cut(s) 738, 951
BseLI CCNNNNNNNGG 5 cut(s) 153, 1034, 1252, 1333, 1392
BseMII CTCAG 6 cut(s) 401, 504, 591, 684, 729, 918
BseNI ACTGG 3 cut(s) 221, 872, 996
BseRI GAGGAG 1 cut(s) 306
BseXI GCAGC 6 cut(s) 218, 838, 970, 1367, 1457, 1503
BseYI CCCAGC 2 cut(s) 506, 1367
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 325, 1346
BsiHKAI GWGCWC 2 cut(s) 10, 458
BsiHKCI CYCGRG 1 cut(s) 775
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 3 cut(s) 163, 485, 548
BslI CCNNNNNNNGG 5 cut(s) 153, 1034, 1252, 1333, 1392
BsmFI GGGAC 3 cut(s) 163, 485, 548
BsmI GAATGC 1 cut(s) 1103
BsnI GGCC 2 cut(s) 325, 1346
BsoBI CYCGRG 1 cut(s) 775
Bsp119I TTCGAA 2 cut(s) 359, 1171
Bsp1286I GDGCHC 3 cut(s) 10, 458, 1411
Bsp68I TCGCGA 1 cut(s) 252
BspACI CCGC 5 cut(s) 181, 415, 427, 829, 1412
BspANI GGCC 2 cut(s) 325, 1346
BspCNI CTCAG 6 cut(s) 400, 505, 590, 685, 728, 919
BspFNI CGCG 1 cut(s) 252
BspHI TCATGA 2 cut(s) 1096, 1125
BspLI GGNNCC 3 cut(s) 179, 560, 963
BspPI GGATC 7 cut(s) 293, 553, 566, 734, 839, 1101, 1379
BspT104I TTCGAA 2 cut(s) 359, 1171
BspTI CTTAAG 1 cut(s) 164
BsrI ACTGG 3 cut(s) 221, 872, 996
BssECI CCNNGG 6 cut(s) 173, 334, 489, 531, 756, 1045
BssT1I CCWWGG 3 cut(s) 173, 334, 756
Bst2UI CCWGG 6 cut(s) 491, 532, 959, 1046, 1247, 1387
Bst4CI ACNGT 3 cut(s) 356, 423, 476
Bst6I CTCTTC 2 cut(s) 127, 1457
BstAFI CTTAAG 1 cut(s) 164
BstAPI GCANNNNNTGC 1 cut(s) 423
BstBI TTCGAA 2 cut(s) 359, 1171
BstDEI CTNAG 7 cut(s) 387, 459, 513, 577, 693, 715, 927
BstENI CCTNNNNNAGG 2 cut(s) 1331, 1390
BstF5I GGATG 5 cut(s) 523, 610, 766, 1281, 1604
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 1 cut(s) 444
BstMWI GCNNNNNNNGC 5 cut(s) 206, 423, 1352, 1364, 1445
BstNI CCWGG 6 cut(s) 491, 532, 959, 1046, 1247, 1387
BstNSI RCATGY 2 cut(s) 200, 1528
BstSCI CCNGG 6 cut(s) 489, 530, 957, 1044, 1245, 1385
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 6 cut(s) 218, 838, 970, 1367, 1457, 1503
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 2 cut(s) 383, 558
BstYI RGATCY 2 cut(s) 383, 558
Bsu36I CCTNAGG 2 cut(s) 693, 715
BsuI GTATCC 1 cut(s) 487
BsuRI GGCC 2 cut(s) 325, 1346
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 5 cut(s) 523, 610, 766, 1281, 1604
BtsI GCAGTG 2 cut(s) 292, 811
BtsIMutI CAGTG 4 cut(s) 214, 292, 428, 811
BtuMI TCGCGA 1 cut(s) 252
CciI TCATGA 2 cut(s) 1096, 1125
CfoI GCGC 1 cut(s) 444
Cfr13I GGNCC 2 cut(s) 177, 1344
Csp6I GTAC 3 cut(s) 650, 851, 877
CviAII CATG 9 cut(s) 197, 822, 915, 980, 1097, 1126, 1495, 1525, 1589
CviQI GTAC 3 cut(s) 650, 851, 877
DdeI CTNAG 7 cut(s) 387, 459, 513, 577, 693, 715, 927
DraI TTTAAA 1 cut(s) 351
EaeI YGGCCR 1 cut(s) 323
Eam1104I CTCTTC 2 cut(s) 127, 1457
EarI CTCTTC 2 cut(s) 127, 1457
Ecl136II GAGCTC 2 cut(s) 8, 456
Eco130I CCWWGG 3 cut(s) 173, 334, 756
Eco24I GRGCYC 3 cut(s) 10, 458, 1411
Eco47I GGWCC 1 cut(s) 177
Eco53kI GAGCTC 2 cut(s) 8, 456
Eco57I CTGAAG 3 cut(s) 705, 915, 1434
Eco81I CCTNAGG 2 cut(s) 693, 715
Eco88I CYCGRG 1 cut(s) 775
EcoICRI GAGCTC 2 cut(s) 8, 456
EcoNI CCTNNNNNAGG 2 cut(s) 1331, 1390
EcoRII CCWGG 6 cut(s) 489, 530, 957, 1044, 1245, 1385
EcoT14I CCWWGG 3 cut(s) 173, 334, 756
EcoT38I GRGCYC 3 cut(s) 10, 458, 1411
ErhI CCWWGG 3 cut(s) 173, 334, 756
FaeI CATG 9 cut(s) 200, 825, 918, 983, 1100, 1129, 1498, 1528, 1592
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 3 cut(s) 163, 485, 548
FatI CATG 9 cut(s) 196, 821, 914, 979, 1096, 1125, 1494, 1524, 1588
FauI CCCGC 2 cut(s) 188, 1419
FauNDI CATATG 1 cut(s) 1012
Fnu4HI GCNGC 7 cut(s) 207, 427, 827, 984, 1356, 1446, 1492
FokI GGATG 5 cut(s) 530, 617, 773, 1288, 1591
FriOI GRGCYC 3 cut(s) 10, 458, 1411
Fsp4HI GCNGC 7 cut(s) 207, 427, 827, 984, 1356, 1446, 1492
FspBI CTAG 2 cut(s) 546, 591
GlaI GCGC 1 cut(s) 443
GluI GCNGC 7 cut(s) 207, 427, 827, 984, 1356, 1446, 1492
GsaI CCCAGC 2 cut(s) 510, 1371
GsuI CTGGAG 4 cut(s) 238, 980, 1229, 1408
HaeIII GGCC 2 cut(s) 325, 1346
HapII CCGG 1 cut(s) 184
HhaI GCGC 1 cut(s) 444
Hin1II CATG 9 cut(s) 200, 825, 918, 983, 1100, 1129, 1498, 1528, 1592
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HpaII CCGG 1 cut(s) 184
HphI GGTGA 7 cut(s) 120, 162, 283, 478, 709, 731, 947
Hpy166II GTNNAC 1 cut(s) 1582
Hpy188III TCNNGA 7 cut(s) 251, 621, 743, 777, 1004, 1097, 1126
Hpy8I GTNNAC 1 cut(s) 1582
Hpy99I CGWCG 5 cut(s) 18, 34, 73, 76, 79
HpyAV CCTTC 9 cut(s) 45, 66, 237, 597, 716, 720, 937, 1126, 1167
HpyCH4III ACNGT 3 cut(s) 356, 423, 476
HpyCH4V TGCA 9 cut(s) 206, 596, 1016, 1209, 1439, 1445, 1459, 1518, 1565
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 423, 1352, 1364, 1445
HpyF3I CTNAG 7 cut(s) 387, 459, 513, 577, 693, 715, 927
Hsp92II CATG 9 cut(s) 200, 825, 918, 983, 1100, 1129, 1498, 1528, 1592
HspAI GCGC 1 cut(s) 442
LmnI GCTCC 4 cut(s) 961, 1248, 1389, 1557
Lsp1109I GCAGC 6 cut(s) 218, 838, 970, 1367, 1457, 1503
LweI GCATC 3 cut(s) 631, 835, 1552
MaeI CTAG 2 cut(s) 546, 591
MaeIII GTNAC 5 cut(s) 20, 168, 900, 1037, 1428
MfeI CAATTG 1 cut(s) 1440
MflI RGATCY 2 cut(s) 383, 558
MhlI GDGCHC 3 cut(s) 10, 458, 1411
MlsI TGGCCA 1 cut(s) 325
MluCI AATT 8 cut(s) 46, 655, 859, 972, 1144, 1197, 1301, 1440
MluNI TGGCCA 1 cut(s) 325
MlyI GAGTC 6 cut(s) 151, 348, 441, 530, 656, 1208
MmeI TCCRAC 1 cut(s) 582
Mox20I TGGCCA 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 859
MscI TGGCCA 1 cut(s) 325
MseI TTAA 5 cut(s) 165, 264, 350, 800, 1203
MslI CAYNNNNRTG 1 cut(s) 1108
Msp20I TGGCCA 1 cut(s) 325
MspA1I CMGCKG 1 cut(s) 829
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 6 cut(s) 491, 532, 959, 1046, 1247, 1387
MunI CAATTG 1 cut(s) 1440
Mva1269I GAATGC 1 cut(s) 1103
MvaI CCWGG 6 cut(s) 491, 532, 959, 1046, 1247, 1387
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 5 cut(s) 206, 423, 1352, 1364, 1445
NdeI CATATG 1 cut(s) 1012
NlaIII CATG 9 cut(s) 200, 825, 918, 983, 1100, 1129, 1498, 1528, 1592
NlaIV GGNNCC 3 cut(s) 179, 560, 963
NmeAIII GCCGAG 1 cut(s) 455
NmuCI GTSAC 3 cut(s) 20, 168, 900
NruI TCGCGA 1 cut(s) 252
NspI RCATGY 2 cut(s) 200, 1528
NspV TTCGAA 2 cut(s) 359, 1171
PaeR7I CTCGAG 1 cut(s) 775
PagI TCATGA 2 cut(s) 1096, 1125
PcsI WCGNNNNNNNCGW 3 cut(s) 35, 74, 80
PctI GAATGC 1 cut(s) 1103
PdmI GAANNNNTTC 1 cut(s) 859
PfeI GAWTC 7 cut(s) 88, 500, 671, 700, 764, 871, 1168
PflFI GACNNNGTC 1 cut(s) 18
PkrI GCNGC 7 cut(s) 208, 428, 828, 985, 1357, 1447, 1493
PleI GAGTC 6 cut(s) 151, 347, 440, 530, 656, 1208
PpsI GAGTC 6 cut(s) 151, 347, 440, 530, 656, 1208
Psp124BI GAGCTC 2 cut(s) 10, 458
Psp6I CCWGG 6 cut(s) 489, 530, 957, 1044, 1245, 1385
PspFI CCCAGC 2 cut(s) 506, 1367
PspGI CCWGG 6 cut(s) 489, 530, 957, 1044, 1245, 1385
PspN4I GGNNCC 3 cut(s) 179, 560, 963
PspPI GGNCC 2 cut(s) 177, 1344
PsuI RGATCY 2 cut(s) 383, 558
PsyI GACNNNGTC 1 cut(s) 18
RruI TCGCGA 1 cut(s) 252
RsaI GTAC 3 cut(s) 651, 852, 878
RsaNI GTAC 3 cut(s) 650, 851, 877
RseI CAYNNNNRTG 1 cut(s) 1108
SacI GAGCTC 2 cut(s) 10, 458
SaqAI TTAA 5 cut(s) 165, 264, 350, 800, 1203
SatI GCNGC 7 cut(s) 207, 427, 827, 984, 1356, 1446, 1492
Sau96I GGNCC 2 cut(s) 177, 1344
ScaI AGTACT 1 cut(s) 651
SchI GAGTC 6 cut(s) 151, 348, 441, 530, 656, 1208
ScrFI CCNGG 6 cut(s) 491, 532, 959, 1046, 1247, 1387
SduI GDGCHC 3 cut(s) 10, 458, 1411
SfaNI GCATC 3 cut(s) 631, 835, 1552
Sfr274I CTCGAG 1 cut(s) 775
SfuI TTCGAA 2 cut(s) 359, 1171
SinI GGWCC 1 cut(s) 177
SlaI CTCGAG 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 1108
SmlI CTYRAG 3 cut(s) 164, 775, 888
SmoI CTYRAG 3 cut(s) 164, 775, 888
Sse9I AATT 8 cut(s) 46, 655, 859, 972, 1144, 1197, 1301, 1440
SsiI CCGC 5 cut(s) 181, 415, 427, 829, 1412
SspMI CTAG 2 cut(s) 546, 591
SstI GAGCTC 2 cut(s) 10, 458
StyD4I CCNGG 6 cut(s) 489, 530, 957, 1044, 1245, 1385
StyI CCWWGG 3 cut(s) 173, 334, 756
TaaI ACNGT 3 cut(s) 356, 423, 476
TaqI TCGA 6 cut(s) 38, 359, 776, 988, 1138, 1171
TasI AATT 8 cut(s) 46, 655, 859, 972, 1144, 1197, 1301, 1440
TatI WGTACW 1 cut(s) 649
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 7 cut(s) 88, 500, 671, 700, 764, 871, 1168
Tru1I TTAA 5 cut(s) 165, 264, 350, 800, 1203
Tru9I TTAA 5 cut(s) 165, 264, 350, 800, 1203
TscAI CASTG 4 cut(s) 221, 292, 428, 811
TseFI GTSAC 3 cut(s) 20, 168, 900
TseI GCWGC 6 cut(s) 206, 826, 983, 1355, 1445, 1491
Tsp45I GTSAC 3 cut(s) 20, 168, 900
TspDTI ATGAA 5 cut(s) 51, 80, 777, 1114, 1142
TspGWI ACGGA 1 cut(s) 864
TspRI CASTG 4 cut(s) 221, 292, 428, 811
Tth111I GACNNNGTC 1 cut(s) 18
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 177
XagI CCTNNNNNAGG 2 cut(s) 1331, 1390
XapI RAATTY 3 cut(s) 46, 655, 972
XceI RCATGY 2 cut(s) 200, 1528
XhoI CTCGAG 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 859
XspI CTAG 2 cut(s) 546, 591
ZrmI AGTACT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.