Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0007764

Physical Location & Seq

Genomic Coordinates Reverse (-)

68710203 .. 68714202

Gene Structure 4000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG429000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGCTCATTGGTTATCTTTCTGTCAACAGCTACGATTTAAACAGTTCGAAAGAAGAAAGGGATATAGTAAGATCTCAGAAAAGAAAGGAATATGAGAAACTGCGCAGACAGTGCCGTCGGGTCATAAAGTGCATCAATGGGAGCTCTAAGTTGAACGGGGACAGTTGTCCTGAGACAGATTCTCCTTGCTCTGAGGATGTGGTTAGTGCCAGGGAGTCCCTTTCTAGTGAAGACAGAATCGCAGATTCTGAATACTCAGATGACCCTTCCACTATATTGTTGGATGGAGATGATACTTCAAGACGAAACACAAATGCTGATTCCAAAGCACTTAACTCTGACTCATCTGACTCAGACTCTTCTGTAGAATCTGAGGTGATTCAGGCTTGCCCCTCATGTGAAGAAAAGGAAAAGAATGATTCTGACATGACTACCAAGGATGATGTATCTCCCTTGAGGACAGAAGTCCAATCAACGCTAACCAGTGAGGATTTTAGCACATGGAAGCGGATCATACGCCTTGATGCAGTACGAACTAATGCAGATTGGATCCCTTACTCCCCAACTCAAGCTGAAGTATCAGAGGATAGGGCACGACGGTCTGCTGAGGCTGTTGGGTTGAAGGATTACGATCACCTGGAGCCTTGTAGAGTTTTCCATGCTGCTCGACTGGTTGCTATTCTTGAAGCATATGCACTGTATGACCCTGAAATTGGTTACTGCCAGGGTATGAGTGATCTACTTTCTCCTATAGCAGCTGTAATGACAGAGGATCATGAGGCTTTCTGGTGTTTTGTGGGTTTCATGAAGAAGGCTCGACATAATTTTAGGCTCGACGAGCTAGGGATCCGAAGGCAGTTGCATATTGTTTCTAAGATTATCAGATGCAAGGACTCCCATCTTTACAGGCACTTGGAGAAGCTCCAGGCTGAGGATTGCTTCTTTGTTTATAGGATGGTGGTCGTGCTATTTAGGAGGGAGTTGACATTTGACCAGACAATATGCCTGTGGGAGGTAATGTGGGCAGATCAAGCAGCCGTTAGGGCTGGGATTGGAAAATCTGCATGGAGCAGAATCAGGCAACGAGCCCCACCAACGGAAGATTTATTACTTTATGCAATCGCAGCTTCAGTATTGCAGAAAAGGAAGTTGATAATAGAGAAGTATAGCAGCATGGATGAGATCATTAGGGAGTGCAATAGCATGTCTGGGCAACTTGATATATGGAAGCTTCTGGATGATGCACATGACTTGGTGGTAAACCTTCATGACAAGATAGAGACATCCATCTCTGCACCATCCCTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

436

Amino Acids

49.68

Weight (kDa)

5.13

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	223 - 343	9.6e-30	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	223 - 341	8.9e-15	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49350 AT5G24390
fragaria_vesca	FvH4_7g32540 FvH4_7g32540 FvH4_7g32540
malus_domestica	MD01G1226100.v1.1 MD07G1296600.v1.1
prunus_persica	Prupe.2G316200_v2.0.a1 Prupe.2G316200_v2.0.a1
pyrus_communis	pycom01g23470 pycom07g26930
rosa_chinensis	RchiOBHm_Chr1g0382381
rosa_laevigata	RLG00000026182
rosa_multiflora	Rmu_co8387727.1_g000001 Rmu_sc0000110.1_g000043
rosa_roxburghii	Rroxscaffold_4G00278150
rosa_rugosa	Rorug01G0433800 Rorug01G0433800 Rorug01G0433900
rosa_samantha	Rh1AG458600 Rh1BG414900 Rh1CG429000 Rh1DG447000
rosa_wichuraiana	Rw1G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	114
Acc16I	TGCGCA	1 cut(s)	104
AciI	CCGC	1 cut(s)	508
AclWI	GGATC	6 cut(s)	518, 544, 557, 780, 841, 854
AcuI	CTGAAG	2 cut(s)	594, 1113
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	4 cut(s)	713, 931, 1012, 1096
AgsI	TTSAA	4 cut(s)	154, 300, 622, 686
AjnI	CCWGG	4 cut(s)	209, 636, 723, 924
AluBI	AGCT	8 cut(s)	30, 144, 572, 758, 841, 922, 1127, 1231
AluI	AGCT	8 cut(s)	30, 144, 572, 758, 841, 922, 1127, 1231
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	2 cut(s)	167, 1274
AlwI	GGATC	6 cut(s)	518, 544, 557, 780, 841, 854
AlwNI	CAGNNNCTG	1 cut(s)	248
ApeKI	GCWGC	5 cut(s)	662, 755, 1034, 1124, 1170
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	388, 626
AsuII	TTCGAA	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	595
BamHI	GGATCC	2 cut(s)	549, 846
BanII	GRGCYC	2 cut(s)	146, 1090
BarI	GAAGNNNNNNTAC	2 cut(s)	1092, 1124
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	146
BbvCI	CCTCAGC	2 cut(s)	606, 930
BbvI	GCAGC	5 cut(s)	649, 767, 1046, 1136, 1182
BccI	CCATC	5 cut(s)	278, 906, 949, 1295, 1306
BceAI	ACGGC	2 cut(s)	99, 1022
BciT130I	CCWGG	4 cut(s)	211, 638, 725, 926
BcoDI	GTCTC	2 cut(s)	167, 1274
BfaI	CTAG	2 cut(s)	225, 842
BfmI	CTRYAG	2 cut(s)	363, 750
BglI	GCCNNNNNGGC	1 cut(s)	1043
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	5 cut(s)	663, 756, 1035, 1125, 1171
BlsI	GCNGC	5 cut(s)	664, 757, 1036, 1126, 1172
Bme1390I	CCNGG	4 cut(s)	211, 638, 725, 926
BmiI	GGNNCC	3 cut(s)	551, 642, 848
BmrFI	CCNGG	4 cut(s)	211, 638, 725, 926
BmsI	GCATC	4 cut(s)	141, 514, 875, 1231
BoxI	GACNNNNGTC	2 cut(s)	165, 464
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	2 cut(s)	659, 908
Bpu10I	CCTNAGC	2 cut(s)	606, 930
Bpu14I	TTCGAA	1 cut(s)	47
BpuEI	CTTGAG	2 cut(s)	475, 552
BsaBI	GATNNNNATC	1 cut(s)	630
BsaJI	CCNNGG	3 cut(s)	210, 435, 724
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 1004, 1034
Bsc4I	CCNNNNNNNGG	4 cut(s)	713, 931, 1012, 1096
Bse1I	ACTGG	2 cut(s)	483, 675
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	4 cut(s)	211, 638, 725, 926
BseDI	CCNNGG	3 cut(s)	210, 435, 724
BseGI	GGATG	8 cut(s)	202, 289, 445, 960, 1183, 1243, 1283, 1298
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	4 cut(s)	713, 931, 1012, 1096
BseMII	CTCAG	8 cut(s)	89, 162, 183, 270, 363, 366, 597, 921
BseNI	ACTGG	2 cut(s)	483, 675
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	5 cut(s)	649, 767, 1046, 1136, 1182
BseYI	CCCAGC	1 cut(s)	1046
BsgI	GTGCAG	1 cut(s)	1278
BsiHKAI	GWGCWC	1 cut(s)	146
BslFI	GGGAC	2 cut(s)	173, 202
BslI	CCNNNNNNNGG	4 cut(s)	713, 931, 1012, 1096
BsmAI	GTCTC	2 cut(s)	167, 1274
BsmFI	GGGAC	2 cut(s)	173, 202
Bsp119I	TTCGAA	1 cut(s)	47
Bsp1286I	GDGCHC	3 cut(s)	146, 595, 1090
Bsp143I	GATC	9 cut(s)	71, 510, 549, 631, 736, 772, 846, 1027, 1182
BspACI	CCGC	1 cut(s)	508
BspCNI	CTCAG	8 cut(s)	88, 163, 184, 269, 364, 365, 598, 922
BspHI	TCATGA	3 cut(s)	775, 804, 1267
BspLI	GGNNCC	3 cut(s)	551, 642, 848
BspPI	GGATC	6 cut(s)	518, 544, 557, 780, 841, 854
BspT104I	TTCGAA	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	483, 675
BssECI	CCNNGG	3 cut(s)	210, 435, 724
BssMI	GATC	9 cut(s)	71, 510, 549, 631, 736, 772, 846, 1027, 1182
BssT1I	CCWWGG	1 cut(s)	435
Bst2UI	CCWGG	4 cut(s)	211, 638, 725, 926
Bst4CI	ACNGT	5 cut(s)	44, 111, 164, 600, 699
Bst6I	CTCTTC	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	388
BstENI	CCTNNNNNAGG	1 cut(s)	1010
BstF5I	GGATG	8 cut(s)	202, 289, 445, 960, 1183, 1243, 1283, 1298
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	9 cut(s)	74, 513, 552, 634, 739, 775, 849, 1030, 1185
BstMAI	GTCTC	2 cut(s)	167, 1274
BstMBI	GATC	9 cut(s)	71, 510, 549, 631, 736, 772, 846, 1027, 1182
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 838, 1031, 1043, 1124
BstNI	CCWGG	4 cut(s)	211, 638, 725, 926
BstNSI	RCATGY	1 cut(s)	1207
BstPAI	GACNNNNGTC	2 cut(s)	165, 464
BstSCI	CCNGG	4 cut(s)	209, 636, 723, 924
BstSFI	CTRYAG	2 cut(s)	363, 750
BstSLI	GKGCMC	1 cut(s)	595
BstV1I	GCAGC	5 cut(s)	649, 767, 1046, 1136, 1182
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	3 cut(s)	71, 549, 846
BstYI	RGATCY	3 cut(s)	71, 549, 846
BtsCI	GGATG	8 cut(s)	202, 289, 445, 960, 1183, 1243, 1283, 1298
BtsIMutI	CAGTG	3 cut(s)	116, 490, 695
Cac8I	GCNNGC	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	248
CciI	TCATGA	3 cut(s)	775, 804, 1267
CfoI	GCGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	530
CviQI	GTAC	1 cut(s)	530
DpnI	GATC	9 cut(s)	73, 512, 551, 633, 738, 774, 848, 1029, 1184
DpnII	GATC	9 cut(s)	71, 510, 549, 631, 736, 772, 846, 1027, 1182
DraI	TTTAAA	1 cut(s)	39
DrdI	GACNNNNNNGTC	1 cut(s)	114
DseDI	GACNNNNNNGTC	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
Ecl136II	GAGCTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	2 cut(s)	146, 1090
Eco53kI	GAGCTC	1 cut(s)	144
Eco57I	CTGAAG	2 cut(s)	594, 1113
EcoICRI	GAGCTC	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	1010
EcoRII	CCWGG	4 cut(s)	209, 636, 723, 924
EcoT14I	CCWWGG	1 cut(s)	435
EcoT38I	GRGCYC	2 cut(s)	146, 1090
ErhI	CCWWGG	1 cut(s)	435
FaqI	GGGAC	2 cut(s)	173, 202
FauNDI	CATATG	1 cut(s)	691
Fnu4HI	GCNGC	5 cut(s)	663, 756, 1035, 1125, 1171
FokI	GGATG	8 cut(s)	209, 296, 452, 967, 1190, 1250, 1270, 1285
FriOI	GRGCYC	2 cut(s)	146, 1090
Fsp4HI	GCNGC	5 cut(s)	663, 756, 1035, 1125, 1171
FspBI	CTAG	2 cut(s)	225, 842
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	5 cut(s)	663, 756, 1035, 1125, 1171
GsaI	CCCAGC	1 cut(s)	1050
GsuI	CTGGAG	2 cut(s)	659, 908
HhaI	GCGC	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	2 cut(s)	25, 984
HindII	GTYRAC	2 cut(s)	25, 984
HindIII	AAGCTT	1 cut(s)	1229
HphI	GGTGA	2 cut(s)	388, 626
Hpy166II	GTNNAC	3 cut(s)	25, 984, 1261
Hpy188III	TCNNGA	7 cut(s)	170, 300, 683, 776, 805, 1235, 1268
Hpy8I	GTNNAC	3 cut(s)	25, 984, 1261
Hpy99I	CGWCG	3 cut(s)	120, 600, 839
HpyAV	CCTTC	5 cut(s)	276, 616, 805, 846, 1274
HpyCH4III	ACNGT	5 cut(s)	44, 111, 164, 600, 699
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 838, 1031, 1043, 1124
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	9 cut(s)	71, 510, 549, 631, 736, 772, 846, 1027, 1182
LmnI	GCTCC	4 cut(s)	141, 640, 927, 1068
Lsp1109I	GCAGC	5 cut(s)	649, 767, 1046, 1136, 1182
LweI	GCATC	4 cut(s)	141, 514, 875, 1231
MaeI	CTAG	2 cut(s)	225, 842
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	9 cut(s)	73, 512, 551, 633, 738, 774, 848, 1029, 1184
MboI	GATC	9 cut(s)	71, 510, 549, 631, 736, 772, 846, 1027, 1182
MboII	GAAGA	6 cut(s)	65, 242, 351, 413, 820, 1112
MflI	RGATCY	3 cut(s)	71, 549, 846
MhlI	GDGCHC	3 cut(s)	146, 595, 1090
MluCI	AATT	2 cut(s)	711, 823
MlyI	GAGTC	5 cut(s)	224, 335, 344, 350, 887
MmeI	TCCRAC	1 cut(s)	261
MseI	TTAA	3 cut(s)	38, 333, 1309
MspA1I	CMGCKG	1 cut(s)	758
MspR9I	CCNGG	4 cut(s)	211, 638, 725, 926
MvaI	CCWGG	4 cut(s)	211, 638, 725, 926
MwoI	GCNNNNNNNGC	5 cut(s)	111, 838, 1031, 1043, 1124
NdeI	CATATG	1 cut(s)	691
NdeII	GATC	9 cut(s)	71, 510, 549, 631, 736, 772, 846, 1027, 1182
NlaIV	GGNNCC	3 cut(s)	551, 642, 848
NsbI	TGCGCA	1 cut(s)	104
NspI	RCATGY	1 cut(s)	1207
NspV	TTCGAA	1 cut(s)	47
PagI	TCATGA	3 cut(s)	775, 804, 1267
PfeI	GAWTC	8 cut(s)	179, 237, 245, 320, 368, 379, 419, 1074
PkrI	GCNGC	5 cut(s)	664, 757, 1036, 1126, 1172
PleI	GAGTC	5 cut(s)	223, 335, 344, 350, 887
PpsI	GAGTC	5 cut(s)	223, 335, 344, 350, 887
PshAI	GACNNNNGTC	2 cut(s)	165, 464
Psp124BI	GAGCTC	1 cut(s)	146
Psp6I	CCWGG	4 cut(s)	209, 636, 723, 924
PspFI	CCCAGC	1 cut(s)	1046
PspGI	CCWGG	4 cut(s)	209, 636, 723, 924
PspN4I	GGNNCC	3 cut(s)	551, 642, 848
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	3 cut(s)	71, 549, 846
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	38, 333, 1309
SatI	GCNGC	5 cut(s)	663, 756, 1035, 1125, 1171
Sau3AI	GATC	9 cut(s)	71, 510, 549, 631, 736, 772, 846, 1027, 1182
SchI	GAGTC	5 cut(s)	224, 335, 344, 350, 887
ScrFI	CCNGG	4 cut(s)	211, 638, 725, 926
SduI	GDGCHC	3 cut(s)	146, 595, 1090
SfaNI	GCATC	4 cut(s)	141, 514, 875, 1231
SfcI	CTRYAG	2 cut(s)	363, 750
SfuI	TTCGAA	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	454, 567
SmoI	CTYRAG	2 cut(s)	454, 567
Sse9I	AATT	2 cut(s)	711, 823
SsiI	CCGC	1 cut(s)	508
SspMI	CTAG	2 cut(s)	225, 842
SstI	GAGCTC	1 cut(s)	146
StyD4I	CCNGG	4 cut(s)	209, 636, 723, 924
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	5 cut(s)	44, 111, 164, 600, 699
TaqI	TCGA	4 cut(s)	47, 667, 817, 834
TasI	AATT	2 cut(s)	711, 823
TfiI	GAWTC	8 cut(s)	179, 237, 245, 320, 368, 379, 419, 1074
Tru1I	TTAA	3 cut(s)	38, 333, 1309
Tru9I	TTAA	3 cut(s)	38, 333, 1309
TscAI	CASTG	3 cut(s)	116, 490, 702
TseI	GCWGC	5 cut(s)	662, 755, 1034, 1124, 1170
TspDTI	ATGAA	3 cut(s)	793, 821, 1256
TspGWI	ACGGA	1 cut(s)	1112
TspRI	CASTG	3 cut(s)	116, 490, 702
XagI	CCTNNNNNAGG	1 cut(s)	1010
XceI	RCATGY	1 cut(s)	1207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	2 cut(s)	225, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.