Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007764

Physical Location & Seq

Genomic Coordinates Forward (+)

53244610 .. 53245615

Gene Structure 1006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0433900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGATAATGATCAACCTTGTGCGAATTCCATTATTGACGATAGCCAAAAGAAGATGATGCATAGAGATATTGAAAGGAAAAGAAGACAAGAAATGGCCGCCCTTTATGCATCACTCAGATCCACACTCCCTCCTCAGTCTATCAAGGGAAAGCGTTCATTGGCAGATCATATGAACGAAGCTATGAATCATATAAAACACCTGCAAACGAGGATCAAAGAACTCGGTGCCCAGAGAGATGACCTAAAGATACAAACGTCGTCGCCGGATTTGAGTTGTACTAGTGCTCTTGGCCTAGCTGGGAATCTTAGTGGATCTACTGGTAGCTCTTCATCATTGTTAGCAGGCAACTTTTCAAGAAGCCGTGTTGCAGTCAACCCTTGCTTAGGTGGCGTTGAGATTGTAATAATCAGCTGTGTTACTGGTGCTTCTGCAGAGCCACAAGGTGTGGTCTTATCAAGATTGCTGCAAATACTGCTTGAACAAGGACTTACTGTAATTAATTGTGCTACTACCCAGGTTAACAAAAGGCTTGTCTACACCATACAATCCGAGGTTAGCAATCCATCATATATAGACTTTCCTGGGCTGGAGCAGACTCTCGCAAAAGTCGTCTCATCATCGACCGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

211

Amino Acids

22.76

Weight (kDa)

8.63

Isoelectric Point (pI)

63.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	17 - 69	4e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49350 AT5G24390
fragaria_vesca	FvH4_7g32540 FvH4_7g32540 FvH4_7g32540
malus_domestica	MD01G1226100.v1.1 MD07G1296600.v1.1
prunus_persica	Prupe.2G316200_v2.0.a1 Prupe.2G316200_v2.0.a1
pyrus_communis	pycom01g23470 pycom07g26930
rosa_chinensis	RchiOBHm_Chr1g0382381
rosa_laevigata	RLG00000026182
rosa_multiflora	Rmu_co8387727.1_g000001 Rmu_sc0000110.1_g000043
rosa_roxburghii	Rroxscaffold_4G00278150
rosa_rugosa	Rorug01G0433800 Rorug01G0433800 Rorug01G0433900
rosa_samantha	Rh1AG458600 Rh1BG414900 Rh1CG429000 Rh1DG447000
rosa_wichuraiana	Rw1G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	210
Acc36I	ACCTGC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	3 cut(s)	114, 221, 322
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	25
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	74, 357, 482
AhlI	ACTAGT	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	516, 583
AluBI	AGCT	4 cut(s)	182, 299, 327, 414
AluI	AGCT	4 cut(s)	182, 299, 327, 414
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	619
AlwI	GGATC	3 cut(s)	114, 221, 322
AoxI	GGCC	2 cut(s)	96, 292
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	1 cut(s)	25
ArsI	GACNNNNNNTTYG	2 cut(s)	519, 551
AseI	ATTAAT	1 cut(s)	501
Asp700I	GAANNNNTTC	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	232
BaeI	ACNNNNGTAYC	2 cut(s)	242, 275
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	453
BccI	CCATC	1 cut(s)	574
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	2 cut(s)	518, 585
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	619
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	2 cut(s)	282, 296
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	2 cut(s)	99, 467
BlsI	GCNGC	2 cut(s)	100, 468
Bme1390I	CCNGG	2 cut(s)	518, 585
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	518, 585
BmsI	GCATC	2 cut(s)	48, 119
BpiI	GAAGAC	1 cut(s)	91
BpmI	CTGGAG	1 cut(s)	611
Bpu10I	CCTNAGC	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	3 cut(s)	516, 552, 584
BsaWI	WCCGGW	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse1I	ACTGG	2 cut(s)	325, 427
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	2 cut(s)	518, 585
BseDI	CCNNGG	3 cut(s)	516, 552, 584
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMII	CTCAG	2 cut(s)	130, 149
BseNI	ACTGG	2 cut(s)	325, 427
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	453
BseYI	CCCAGC	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	98, 294
BshNI	GGYRCC	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	266, 627
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	619
BsmBI	CGTCTC	1 cut(s)	619
BsnI	GGCC	2 cut(s)	98, 294
Bsp1286I	GDGCHC	2 cut(s)	232, 289
Bsp143I	GATC	5 cut(s)	10, 119, 166, 213, 314
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	2 cut(s)	98, 294
BspCNI	CTCAG	2 cut(s)	129, 148
BspLI	GGNNCC	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	210
BspPI	GGATC	3 cut(s)	114, 221, 322
BspQI	GCTCTTC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	325, 427
BssECI	CCNNGG	3 cut(s)	516, 552, 584
BssMI	GATC	5 cut(s)	10, 119, 166, 213, 314
Bst2UI	CCWGG	2 cut(s)	518, 585
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	4 cut(s)	116, 135, 308, 385
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstKTI	GATC	5 cut(s)	13, 122, 169, 216, 317
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	5 cut(s)	10, 119, 166, 213, 314
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 390, 475
BstNI	CCWGG	2 cut(s)	518, 585
BstSCI	CCNGG	2 cut(s)	516, 583
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	2 cut(s)	119, 314
BstYI	RGATCY	2 cut(s)	119, 314
BsuRI	GGCC	2 cut(s)	98, 294
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	279
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	4 cut(s)	116, 135, 308, 385
DpnI	GATC	5 cut(s)	12, 121, 168, 215, 316
DpnII	GATC	5 cut(s)	10, 119, 166, 213, 314
DraIII	CACNNNGTG	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	516, 583
EcoT22I	ATGCAT	2 cut(s)	63, 112
Esp3I	CGTCTC	1 cut(s)	619
FauNDI	CATATG	1 cut(s)	171
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	99, 467
Fsp4HI	GCNGC	2 cut(s)	99, 467
FspBI	CTAG	2 cut(s)	282, 296
GluI	GCNGC	2 cut(s)	99, 467
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	611
HaeIII	GGCC	2 cut(s)	98, 294
HapII	CCGG	2 cut(s)	266, 627
HincII	GTYRAC	2 cut(s)	376, 523
HindII	GTYRAC	2 cut(s)	376, 523
HinfI	GANTC	3 cut(s)	187, 304, 598
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	2 cut(s)	266, 627
Hpy166II	GTNNAC	3 cut(s)	376, 523, 538
Hpy188I	TCNGA	2 cut(s)	119, 553
Hpy188III	TCNNGA	2 cut(s)	357, 459
Hpy8I	GTNNAC	3 cut(s)	376, 523, 538
Hpy99I	CGWCG	2 cut(s)	262, 265
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	6 cut(s)	61, 110, 205, 371, 434, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 390, 475
HpyF3I	CTNAG	4 cut(s)	116, 135, 308, 385
HpySE526I	ACGT	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	10
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	5 cut(s)	10, 119, 166, 213, 314
LguI	GCTCTTC	1 cut(s)	334
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	1 cut(s)	453
LweI	GCATC	2 cut(s)	48, 119
MaeI	CTAG	2 cut(s)	282, 296
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	5 cut(s)	12, 121, 168, 215, 316
MboI	GATC	5 cut(s)	10, 119, 166, 213, 314
MboII	GAAGA	3 cut(s)	64, 96, 321
MflI	RGATCY	2 cut(s)	119, 314
MhlI	GDGCHC	2 cut(s)	232, 289
MluCI	AATT	3 cut(s)	25, 498, 502
MlyI	GAGTC	1 cut(s)	592
MnlI	CCTC	4 cut(s)	141, 144, 204, 547
Mph1103I	ATGCAT	2 cut(s)	63, 112
MroXI	GAANNNNTTC	1 cut(s)	154
MseI	TTAA	2 cut(s)	501, 522
MspA1I	CMGCKG	1 cut(s)	414
MspI	CCGG	2 cut(s)	266, 627
MspR9I	CCNGG	2 cut(s)	518, 585
MvaI	CCWGG	2 cut(s)	518, 585
MwoI	GCNNNNNNNGC	3 cut(s)	107, 390, 475
NdeI	CATATG	1 cut(s)	171
NdeII	GATC	5 cut(s)	10, 119, 166, 213, 314
NlaIV	GGNNCC	1 cut(s)	229
NsiI	ATGCAT	2 cut(s)	63, 112
PaqCI	CACCTGC	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	187, 304
PkrI	GCNGC	2 cut(s)	100, 468
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PshBI	ATTAAT	1 cut(s)	501
Psp6I	CCWGG	2 cut(s)	516, 583
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	2 cut(s)	516, 583
PspN4I	GGNNCC	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	119, 314
PvuII	CAGCTG	1 cut(s)	414
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	501, 522
SatI	GCNGC	2 cut(s)	99, 467
Sau3AI	GATC	5 cut(s)	10, 119, 166, 213, 314
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	2 cut(s)	518, 585
SduI	GDGCHC	2 cut(s)	232, 289
SfaNI	GCATC	2 cut(s)	48, 119
SfcI	CTRYAG	1 cut(s)	432
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	3 cut(s)	25, 498, 502
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	2 cut(s)	282, 296
StyD4I	CCNGG	2 cut(s)	516, 583
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	623
TasI	AATT	3 cut(s)	25, 498, 502
TatI	WGTACW	1 cut(s)	278
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	187, 304
Tru1I	TTAA	2 cut(s)	501, 522
Tru9I	TTAA	2 cut(s)	501, 522
TseI	GCWGC	1 cut(s)	466
TspDTI	ATGAA	4 cut(s)	147, 188, 200, 321
VspI	ATTAAT	1 cut(s)	501
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	2 cut(s)	282, 296
Zsp2I	ATGCAT	2 cut(s)	63, 112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.