Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8387727.1

Orthogroup ID

OG0007764

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1125

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8387727.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

tgctctgaggatgtggttagtgccagggagtccctttctagtgaagacagaatcgcagattctgaatactcagatgacccttccactatattgttggatggagatgatacttcaagacgaaacacaaatgctgattccaaagcacttaactctgactcatctgactcagactcttctgtagaatctgaggtgattcaggcttgcccctcatgtgaagaaaaggaaaagaatgattctgacatgactaccaaggatgatgtatctcccttgaggacagaagtccaatccacgctaaccagtgaggattttagcacatggaagcggatcatacgccttgatgcagtacgaactaatgcagattggatcccttactccccaactcaagctgaagtatcagaggatagggcacgacggtctgctgaggctgttgggttgaaggattacgatcacctggagccttgtagagttttccatgctgctcgactggttgctattcttgaagcatatgcactgtatgaccccgaaattggttactgccagggtatgagtgatctactttctcctatagcagctgtaatgacagaggatcatgaggctttctggtgttttgtgggtttcatgaagaaggctcgacataattttaggctcgacgagctagggatccgaaggcagttgcatattgtttctaagattatcagatgcaaggactcccatctttacaggcacttggagaagctccaggctgaggattgcttctttgtttataggatggtggtcgtgctatttaggagggagttgacatttgaccagacaatatgcctgtgggaggtaatgtgggcagatcaagcagccgttagggctgggattggaaaatctgcatggagcagaatcaggcaacgagccccaccaacagaagatttattactttatgcaatcgcagcttcagtattgcagaaaaggaagctgataatagagaagtatagcagcatggatgagatcattagggagtgcaatagcatgtctgggcaacttgatatatggaagcttctggatgatgcgcatgacttggtggtaaaccttcatgacaagatagagacatccatctctgcaccatcccttagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

374

Amino Acids

42.5

Weight (kDa)

4.88

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49350 AT5G24390
fragaria_vesca	FvH4_7g32540 FvH4_7g32540 FvH4_7g32540
malus_domestica	MD01G1226100.v1.1 MD07G1296600.v1.1
prunus_persica	Prupe.2G316200_v2.0.a1 Prupe.2G316200_v2.0.a1
pyrus_communis	pycom01g23470 pycom07g26930
rosa_chinensis	RchiOBHm_Chr1g0382381
rosa_laevigata	RLG00000026182
rosa_multiflora	Rmu_co8387727.1_g000001 Rmu_sc0000110.1_g000043
rosa_roxburghii	Rroxscaffold_4G00278150
rosa_rugosa	Rorug01G0433800 Rorug01G0433800 Rorug01G0433900
rosa_samantha	Rh1AG458600 Rh1BG414900 Rh1CG429000 Rh1DG447000
rosa_wichuraiana	Rw1G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1059
AciI	CCGC	1 cut(s)	322
AclWI	GGATC	6 cut(s)	332, 358, 371, 594, 655, 668
AcuI	CTGAAG	2 cut(s)	408, 927
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	3 cut(s)	527, 745, 826
AgsI	TTSAA	3 cut(s)	114, 436, 500
AjnI	CCWGG	4 cut(s)	23, 450, 537, 738
AluBI	AGCT	8 cut(s)	386, 572, 655, 736, 941, 964, 1045, 1122
AluI	AGCT	8 cut(s)	386, 572, 655, 736, 941, 964, 1045, 1122
Alw26I	GTCTC	1 cut(s)	1088
AlwI	GGATC	6 cut(s)	332, 358, 371, 594, 655, 668
AlwNI	CAGNNNCTG	1 cut(s)	62
ApeKI	GCWGC	5 cut(s)	476, 569, 848, 938, 984
AspLEI	GCGC	1 cut(s)	1060
AsuHPI	GGTGA	2 cut(s)	202, 440
BaeGI	GKGCMC	1 cut(s)	409
BamHI	GGATCC	2 cut(s)	363, 660
BanII	GRGCYC	1 cut(s)	904
BarI	GAAGNNNNNNTAC	2 cut(s)	906, 938
BbsI	GAAGAC	1 cut(s)	51
BbvCI	CCTCAGC	2 cut(s)	420, 744
BbvI	GCAGC	5 cut(s)	463, 581, 860, 950, 996
BccI	CCATC	5 cut(s)	92, 720, 763, 1109, 1120
BceAI	ACGGC	1 cut(s)	836
BciT130I	CCWGG	4 cut(s)	25, 452, 539, 740
BcoDI	GTCTC	1 cut(s)	1088
BfaI	CTAG	2 cut(s)	39, 656
BfmI	CTRYAG	2 cut(s)	177, 564
BglI	GCCNNNNNGGC	1 cut(s)	857
BisI	GCNGC	5 cut(s)	477, 570, 849, 939, 985
BlsI	GCNGC	5 cut(s)	478, 571, 850, 940, 986
Bme1390I	CCNGG	4 cut(s)	25, 452, 539, 740
BmiI	GGNNCC	3 cut(s)	365, 456, 662
BmrFI	CCNGG	4 cut(s)	25, 452, 539, 740
BmsI	GCATC	3 cut(s)	328, 689, 1045
BoxI	GACNNNNGTC	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	2 cut(s)	473, 722
Bpu10I	CCTNAGC	3 cut(s)	420, 744, 1118
BpuEI	CTTGAG	2 cut(s)	289, 366
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	3 cut(s)	24, 249, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bsc4I	CCNNNNNNNGG	3 cut(s)	527, 745, 826
Bse1I	ACTGG	2 cut(s)	297, 489
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	4 cut(s)	25, 452, 539, 740
BseDI	CCNNGG	3 cut(s)	24, 249, 538
BseGI	GGATG	8 cut(s)	16, 103, 259, 774, 997, 1057, 1097, 1112
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	527, 745, 826
BseMII	CTCAG	5 cut(s)	84, 177, 180, 411, 735
BseNI	ACTGG	2 cut(s)	297, 489
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	5 cut(s)	463, 581, 860, 950, 996
BseYI	CCCAGC	1 cut(s)	860
BsgI	GTGCAG	1 cut(s)	1092
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	3 cut(s)	527, 745, 826
BsmAI	GTCTC	1 cut(s)	1088
BsmFI	GGGAC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	409, 904
Bsp143I	GATC	8 cut(s)	324, 363, 445, 550, 586, 660, 841, 996
BspACI	CCGC	1 cut(s)	322
BspCNI	CTCAG	5 cut(s)	83, 178, 179, 412, 736
BspHI	TCATGA	3 cut(s)	589, 618, 1081
BspLI	GGNNCC	3 cut(s)	365, 456, 662
BspPI	GGATC	6 cut(s)	332, 358, 371, 594, 655, 668
BsrI	ACTGG	2 cut(s)	297, 489
BssECI	CCNNGG	3 cut(s)	24, 249, 538
BssMI	GATC	8 cut(s)	324, 363, 445, 550, 586, 660, 841, 996
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	4 cut(s)	25, 452, 539, 740
Bst4CI	ACNGT	2 cut(s)	414, 513
Bst6I	CTCTTC	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	8 cut(s)	6, 70, 166, 186, 420, 687, 744, 1118
BstENI	CCTNNNNNAGG	1 cut(s)	824
BstF5I	GGATG	8 cut(s)	16, 103, 259, 774, 997, 1057, 1097, 1112
BstHHI	GCGC	1 cut(s)	1060
BstKTI	GATC	8 cut(s)	327, 366, 448, 553, 589, 663, 844, 999
BstMAI	GTCTC	1 cut(s)	1088
BstMBI	GATC	8 cut(s)	324, 363, 445, 550, 586, 660, 841, 996
BstMWI	GCNNNNNNNGC	4 cut(s)	652, 845, 857, 938
BstNI	CCWGG	4 cut(s)	25, 452, 539, 740
BstNSI	RCATGY	1 cut(s)	1021
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	4 cut(s)	23, 450, 537, 738
BstSFI	CTRYAG	2 cut(s)	177, 564
BstSLI	GKGCMC	1 cut(s)	409
BstV1I	GCAGC	5 cut(s)	463, 581, 860, 950, 996
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	363, 660
BstYI	RGATCY	2 cut(s)	363, 660
BtsCI	GGATG	8 cut(s)	16, 103, 259, 774, 997, 1057, 1097, 1112
BtsIMutI	CAGTG	2 cut(s)	304, 509
Cac8I	GCNNGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	62
CciI	TCATGA	3 cut(s)	589, 618, 1081
CfoI	GCGC	1 cut(s)	1060
Csp6I	GTAC	1 cut(s)	344
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	8 cut(s)	6, 70, 166, 186, 420, 687, 744, 1118
DpnI	GATC	8 cut(s)	326, 365, 447, 552, 588, 662, 843, 998
DpnII	GATC	8 cut(s)	324, 363, 445, 550, 586, 660, 841, 996
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	904
Eco57I	CTGAAG	2 cut(s)	408, 927
EcoNI	CCTNNNNNAGG	1 cut(s)	824
EcoRII	CCWGG	4 cut(s)	23, 450, 537, 738
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	904
ErhI	CCWWGG	1 cut(s)	249
FaqI	GGGAC	1 cut(s)	16
FauNDI	CATATG	1 cut(s)	505
Fnu4HI	GCNGC	5 cut(s)	477, 570, 849, 939, 985
FokI	GGATG	8 cut(s)	23, 110, 266, 781, 1004, 1064, 1084, 1099
FriOI	GRGCYC	1 cut(s)	904
Fsp4HI	GCNGC	5 cut(s)	477, 570, 849, 939, 985
FspAI	RTGCGCAY	1 cut(s)	1059
FspBI	CTAG	2 cut(s)	39, 656
FspI	TGCGCA	1 cut(s)	1059
GlaI	GCGC	1 cut(s)	1059
GluI	GCNGC	5 cut(s)	477, 570, 849, 939, 985
GsaI	CCCAGC	1 cut(s)	864
GsuI	CTGGAG	2 cut(s)	473, 722
HhaI	GCGC	1 cut(s)	1060
Hin6I	GCGC	1 cut(s)	1058
HinP1I	GCGC	1 cut(s)	1058
HincII	GTYRAC	1 cut(s)	798
HindII	GTYRAC	1 cut(s)	798
HindIII	AAGCTT	1 cut(s)	1043
HphI	GGTGA	2 cut(s)	202, 440
Hpy166II	GTNNAC	2 cut(s)	798, 1075
Hpy188III	TCNNGA	6 cut(s)	114, 497, 590, 619, 1049, 1082
Hpy8I	GTNNAC	2 cut(s)	798, 1075
Hpy99I	CGWCG	2 cut(s)	414, 653
HpyAV	CCTTC	5 cut(s)	90, 430, 619, 660, 1088
HpyCH4III	ACNGT	2 cut(s)	414, 513
HpyF10VI	GCNNNNNNNGC	4 cut(s)	652, 845, 857, 938
HpyF3I	CTNAG	8 cut(s)	6, 70, 166, 186, 420, 687, 744, 1118
HspAI	GCGC	1 cut(s)	1058
Kzo9I	GATC	8 cut(s)	324, 363, 445, 550, 586, 660, 841, 996
LmnI	GCTCC	3 cut(s)	454, 741, 882
Lsp1109I	GCAGC	5 cut(s)	463, 581, 860, 950, 996
LweI	GCATC	3 cut(s)	328, 689, 1045
MaeI	CTAG	2 cut(s)	39, 656
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	8 cut(s)	326, 365, 447, 552, 588, 662, 843, 998
MboI	GATC	8 cut(s)	324, 363, 445, 550, 586, 660, 841, 996
MboII	GAAGA	5 cut(s)	56, 165, 227, 634, 926
MflI	RGATCY	2 cut(s)	363, 660
MhlI	GDGCHC	2 cut(s)	409, 904
MluCI	AATT	2 cut(s)	525, 637
MlyI	GAGTC	5 cut(s)	38, 149, 158, 164, 701
MmeI	TCCRAC	1 cut(s)	75
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	572
MspR9I	CCNGG	4 cut(s)	25, 452, 539, 740
MvaI	CCWGG	4 cut(s)	25, 452, 539, 740
MwoI	GCNNNNNNNGC	4 cut(s)	652, 845, 857, 938
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	8 cut(s)	324, 363, 445, 550, 586, 660, 841, 996
NlaIV	GGNNCC	3 cut(s)	365, 456, 662
NsbI	TGCGCA	1 cut(s)	1059
NspI	RCATGY	1 cut(s)	1021
PagI	TCATGA	3 cut(s)	589, 618, 1081
PfeI	GAWTC	7 cut(s)	51, 59, 134, 182, 193, 233, 888
PkrI	GCNGC	5 cut(s)	478, 571, 850, 940, 986
PleI	GAGTC	5 cut(s)	37, 149, 158, 164, 701
PpsI	GAGTC	5 cut(s)	37, 149, 158, 164, 701
PshAI	GACNNNNGTC	1 cut(s)	278
Psp6I	CCWGG	4 cut(s)	23, 450, 537, 738
PspFI	CCCAGC	1 cut(s)	860
PspGI	CCWGG	4 cut(s)	23, 450, 537, 738
PspN4I	GGNNCC	3 cut(s)	365, 456, 662
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	2 cut(s)	363, 660
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	5 cut(s)	477, 570, 849, 939, 985
Sau3AI	GATC	8 cut(s)	324, 363, 445, 550, 586, 660, 841, 996
SchI	GAGTC	5 cut(s)	38, 149, 158, 164, 701
ScrFI	CCNGG	4 cut(s)	25, 452, 539, 740
SduI	GDGCHC	2 cut(s)	409, 904
SfaNI	GCATC	3 cut(s)	328, 689, 1045
SfcI	CTRYAG	2 cut(s)	177, 564
SmlI	CTYRAG	2 cut(s)	268, 381
SmoI	CTYRAG	2 cut(s)	268, 381
Sse9I	AATT	2 cut(s)	525, 637
SsiI	CCGC	1 cut(s)	322
SspMI	CTAG	2 cut(s)	39, 656
StyD4I	CCNGG	4 cut(s)	23, 450, 537, 738
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	414, 513
TaqI	TCGA	3 cut(s)	481, 631, 648
TasI	AATT	2 cut(s)	525, 637
TfiI	GAWTC	7 cut(s)	51, 59, 134, 182, 193, 233, 888
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	304, 516
TseI	GCWGC	5 cut(s)	476, 569, 848, 938, 984
TspDTI	ATGAA	3 cut(s)	607, 635, 1070
TspRI	CASTG	2 cut(s)	304, 516
XagI	CCTNNNNNAGG	1 cut(s)	824
XceI	RCATGY	1 cut(s)	1021
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	2 cut(s)	39, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.