pycom01g23470

GTPase-activating protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
20767845 .. 20771293
3449 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23470.2

Sequence Viewer

Length: 1569 bp
ATGATCGCCTCCGGCTCCGGAAACGCCTTCATCTCCGGCGGAGGCGGGTTATGGTTGGCCGCGCCGTCGTACGTGACCGTCGCCGTCACGGCCTTGGCTGGGCTCGCGGTGGTCGTGGCCGTGTTCTGCACTGCCACTAGGAAAAGAAAACATGCCCTTTCACCTCAGCAATGGAGGCTTTTCTTTACGCCTGATGGAAAGCTTCGAGATGGTGGAGTTAAGTTGGTGAAGAAAGTTCGCAGTGGGGGTGTTGATCCAAGTATTAGGGCAGAAGTTTGGCCATTCCTCCTTGGAGTCTATGAATTAAACAGTTCAAAAGAAGAAAGAGATGTAGTAAGATCTCAGAAAAGAAAGGAATATGAGAAACTCCGCAGACAGTGCCGCCGACTCACAAAGCGCGAAAATGATAGCTCTAAGTTGAATGGGGGCGGTTGTAGATTCACCCATGATACAGATTCTCCCAGCTCTGAGGATGTGGTTAGCGCCAGGGAATCCCTTTCTAGTGAAGATAAGATACCAGATGCTGAATACTCAGATGACCCTTCCAGTACGTTGTTGGATGGAGATGATGATGGTTCAAGAGAAAACACAAATGCGGATGCCAAAGACTCTGACTCATTTGACTCGGACTCCTCTGAAGAACCTGAGGTGATTCAGGCTTTCCCCTCATGTGAAGGGAGGGAAGAAAATGATCCTGATGTGACTTCCAAGGATGAATCTTCTCCCTTGAGGACGGAAGTCCAATCAAAACTAAACAGAGAGGATTTTGCCACATGGCAGCGGATCATACGCCTTGACGCAATACGAACTAATTCGGATTGGATTCCGCACTCCCCATCTCAAGCTGAAGTGTCACACGATAGGGCATCACGTTCTGCTGAGGCTGTTGGGTTGAAAGATTACAGTCACTTGGAGCCTTGCAGAACTTTCCATGCTGCTAGACTAGTTGCTATTCTTGAAGCATATGCACTCTATGATCCCGAAATTGGTTACTGCCAGGGTATGAGTGACCTGCTTTCTCCTATAGCTGCTGTAATAACAGAGGATCATGAGGCTTTCTGGTGTTTTGTCGGTTTCATGAAGAAGGCTCGACATAATTTTAGGCTTGATGAGGTAGGGATCCGAAAGCAGTTGAGTATCGTTTCTAAGATTATCAAATGTAAGGACTCCCACCTATACAGGCACTTGGAGAAGCTCCAGGCGGAGGATTGCTTTTTTGTTTATCGGATGGTGGTTGTGCTATTTAGGAGAGAGTTAACATTCGAACAGACAGTATGCCTATGGGAGGTAATGTGGGCCGATCAAGCAGCCATTAGGGCAGGGATCGGAAAATCTGCGTGGAGCAGGATAAGGCAACGAGCCCCACCAACAGACGATTTGTTACTTTTTGCAATCGCAGCTTCCGTATTGCAGAAGAGGAAACTGATAATCGAAAAGTATAGCAGCATGGATGAGATTATCCGGGAGTGCAACAGCATGTCCGGGCAACTTGATATATGGAAGCTCCTCGACGATGCACATGACTTGGTGGTAAACCTCCATGACAAGATAGAGACATCTTTCTCATGA

Protein Analysis

523

Amino Acids

58.68

Weight (kDa)

5.61

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1020
AccII CGCG 3 cut(s) 62, 107, 399
AccIII TCCGGA 1 cut(s) 17
AclWI GGATC 8 cut(s) 248, 686, 791, 971, 1053, 1114, 1127, 1331
AcoI YGGCCR 3 cut(s) 57, 117, 278
AcuI CTGAAG 2 cut(s) 657, 867
AfaI GTAC 2 cut(s) 71, 550
AfiI CCNNNNNNNGG 4 cut(s) 99, 986, 1204, 1285
AgsI TTSAA 5 cut(s) 315, 421, 579, 895, 959
AhlI ACTAGT 1 cut(s) 943
AjnI CCWGG 3 cut(s) 485, 996, 1197
AluBI AGCT 8 cut(s) 202, 411, 465, 845, 1028, 1195, 1400, 1504
AluI AGCT 8 cut(s) 202, 411, 465, 845, 1028, 1195, 1400, 1504
Alw26I GTCTC 1 cut(s) 1547
AlwI GGATC 8 cut(s) 248, 686, 791, 971, 1053, 1114, 1127, 1331
AlwNI CAGNNNCTG 1 cut(s) 524
Aor13HI TCCGGA 1 cut(s) 17
AoxI GGCC 5 cut(s) 57, 90, 117, 278, 1296
ApeKI GCWGC 6 cut(s) 778, 935, 1028, 1307, 1397, 1443
Asp700I GAANNNNTTC 1 cut(s) 811
AspLEI GCGC 3 cut(s) 64, 399, 485
AspS9I GGNCC 1 cut(s) 1296
AsuC2I CCSGG 2 cut(s) 1463, 1483
AsuHPI GGTGA 4 cut(s) 153, 238, 433, 661
AsuII TTCGAA 1 cut(s) 1263
AxyI CCTNAGG 1 cut(s) 645
BalI TGGCCA 1 cut(s) 280
BamHI GGATCC 1 cut(s) 1119
BanII GRGCYC 2 cut(s) 105, 1363
BarI GAAGNNNNNNTAC 2 cut(s) 498, 530
BbvCI CCTCAGC 2 cut(s) 165, 879
BbvI GCAGC 6 cut(s) 790, 922, 1015, 1319, 1409, 1455
BccI CCATC 6 cut(s) 188, 203, 554, 566, 844, 1222
BceAI ACGGC 4 cut(s) 49, 68, 104, 105
BciT130I CCWGG 3 cut(s) 487, 998, 1199
BcnI CCSGG 2 cut(s) 1463, 1483
BcoDI GTCTC 1 cut(s) 1547
BcuI ACTAGT 1 cut(s) 943
BfaI CTAG 4 cut(s) 138, 501, 939, 944
BfmI CTRYAG 1 cut(s) 1023
BfoI RGCGCY 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 1020
BglI GCCNNNNNGGC 2 cut(s) 89, 1316
BglII AGATCT 1 cut(s) 338
BisI GCNGC 8 cut(s) 60, 382, 779, 936, 1029, 1308, 1398, 1444
BlsI GCNGC 8 cut(s) 61, 383, 780, 937, 1030, 1309, 1399, 1445
Bme1390I CCNGG 5 cut(s) 487, 998, 1199, 1463, 1483
BmgT120I GGNCC 1 cut(s) 1296
BmiI GGNNCC 3 cut(s) 16, 915, 1121
BmrFI CCNGG 5 cut(s) 487, 998, 1199, 1463, 1483
BmsI GCATC 4 cut(s) 511, 589, 875, 1504
BoxI GACNNNNGTC 1 cut(s) 737
BpmI CTGGAG 1 cut(s) 1181
Bpu10I CCTNAGC 2 cut(s) 165, 879
Bpu14I TTCGAA 1 cut(s) 1263
BpuEI CTTGAG 2 cut(s) 748, 825
BpuMI CCSGG 2 cut(s) 1463, 1483
BsaAI YACGTR 1 cut(s) 73
BsaJI CCNNGG 5 cut(s) 93, 289, 486, 708, 997
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 6 cut(s) 442, 472, 614, 644, 1277, 1307
Bsc4I CCNNNNNNNGG 4 cut(s) 99, 986, 1204, 1285
Bse1I ACTGG 1 cut(s) 546
Bse21I CCTNAGG 1 cut(s) 645
Bse3DI GCAATG 1 cut(s) 176
BseAI TCCGGA 1 cut(s) 17
BseBI CCWGG 3 cut(s) 487, 998, 1199
BseDI CCNNGG 5 cut(s) 93, 289, 486, 708, 997
BseGI GGATG 6 cut(s) 478, 565, 604, 718, 1233, 1456
BseLI CCNNNNNNNGG 4 cut(s) 99, 986, 1204, 1285
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 6 cut(s) 179, 356, 459, 546, 636, 870
BseNI ACTGG 1 cut(s) 546
BseRI GAGGAG 2 cut(s) 622, 1496
BseXI GCAGC 6 cut(s) 790, 922, 1015, 1319, 1409, 1455
BseYI CCCAGC 2 cut(s) 98, 461
BsgI GTGCAG 1 cut(s) 112
Bsh1236I CGCG 3 cut(s) 62, 107, 399
BshFI GGCC 5 cut(s) 59, 92, 119, 280, 1298
BsiSI CCGG 5 cut(s) 12, 18, 36, 1462, 1482
BsiWI CGTACG 1 cut(s) 69
BslI CCNNNNNNNGG 4 cut(s) 99, 986, 1204, 1285
BsmAI GTCTC 1 cut(s) 1547
BsnI GGCC 5 cut(s) 59, 92, 119, 280, 1298
Bsp119I TTCGAA 1 cut(s) 1263
Bsp1286I GDGCHC 2 cut(s) 105, 1363
Bsp13I TCCGGA 1 cut(s) 17
BspANI GGCC 5 cut(s) 59, 92, 119, 280, 1298
BspCNI CTCAG 6 cut(s) 178, 355, 460, 545, 637, 871
BspEI TCCGGA 1 cut(s) 17
BspFNI CGCG 3 cut(s) 62, 107, 399
BspHI TCATGA 3 cut(s) 1048, 1077, 1565
BspLI GGNNCC 3 cut(s) 16, 915, 1121
BspMI ACCTGC 1 cut(s) 1020
BspPI GGATC 8 cut(s) 248, 686, 791, 971, 1053, 1114, 1127, 1331
BspT104I TTCGAA 1 cut(s) 1263
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 1 cut(s) 546
BssECI CCNNGG 5 cut(s) 93, 289, 486, 708, 997
BssT1I CCWWGG 3 cut(s) 93, 289, 708
Bst2UI CCWGG 3 cut(s) 487, 998, 1199
Bst4CI ACNGT 5 cut(s) 79, 311, 378, 905, 1273
Bst6I CTCTTC 1 cut(s) 1409
BstAPI GCANNNNNTGC 1 cut(s) 378
BstBAI YACGTR 1 cut(s) 73
BstBI TTCGAA 1 cut(s) 1263
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 8 cut(s) 165, 342, 414, 468, 532, 645, 879, 1146
BstENI CCTNNNNNAGG 1 cut(s) 1283
BstF5I GGATG 6 cut(s) 478, 565, 604, 718, 1233, 1456
BstFNI CGCG 3 cut(s) 62, 107, 399
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 3 cut(s) 64, 399, 485
BstMAI GTCTC 1 cut(s) 1547
BstMWI GCNNNNNNNGC 7 cut(s) 89, 104, 175, 378, 1304, 1316, 1397
BstNI CCWGG 3 cut(s) 487, 998, 1199
BstNSI RCATGY 2 cut(s) 155, 1480
BstPAI GACNNNNGTC 1 cut(s) 737
BstSCI CCNGG 5 cut(s) 485, 996, 1197, 1461, 1481
BstSFI CTRYAG 1 cut(s) 1023
BstUI CGCG 3 cut(s) 62, 107, 399
BstV1I GCAGC 6 cut(s) 790, 922, 1015, 1319, 1409, 1455
BstX2I RGATCY 2 cut(s) 338, 1119
BstYI RGATCY 2 cut(s) 338, 1119
Bsu36I CCTNAGG 1 cut(s) 645
BsuRI GGCC 5 cut(s) 59, 92, 119, 280, 1298
BtsCI GGATG 6 cut(s) 478, 565, 604, 718, 1233, 1456
BtsI GCAGTG 2 cut(s) 129, 247
BtsIMutI CAGTG 3 cut(s) 129, 247, 383
BveI ACCTGC 1 cut(s) 1020
Cac8I GCNNGC 1 cut(s) 105
CaiI CAGNNNCTG 1 cut(s) 524
CciI TCATGA 3 cut(s) 1048, 1077, 1565
CfoI GCGC 3 cut(s) 64, 399, 485
Cfr13I GGNCC 1 cut(s) 1296
CseI GACGC 1 cut(s) 806
Csp6I GTAC 2 cut(s) 70, 549
CviQI GTAC 2 cut(s) 70, 549
DdeI CTNAG 8 cut(s) 165, 342, 414, 468, 532, 645, 879, 1146
EaeI YGGCCR 3 cut(s) 57, 117, 278
Eam1104I CTCTTC 1 cut(s) 1409
EarI CTCTTC 1 cut(s) 1409
EciI GGCGGA 2 cut(s) 54, 1217
Eco130I CCWWGG 3 cut(s) 93, 289, 708
Eco24I GRGCYC 2 cut(s) 105, 1363
Eco57I CTGAAG 2 cut(s) 657, 867
Eco81I CCTNAGG 1 cut(s) 645
EcoNI CCTNNNNNAGG 1 cut(s) 1283
EcoRII CCWGG 3 cut(s) 485, 996, 1197
EcoT14I CCWWGG 3 cut(s) 93, 289, 708
EcoT38I GRGCYC 2 cut(s) 105, 1363
ErhI CCWWGG 3 cut(s) 93, 289, 708
FauI CCCGC 1 cut(s) 38
FauNDI CATATG 1 cut(s) 964
Fnu4HI GCNGC 8 cut(s) 60, 382, 779, 936, 1029, 1308, 1398, 1444
FokI GGATG 6 cut(s) 485, 572, 611, 725, 1240, 1463
FriOI GRGCYC 2 cut(s) 105, 1363
Fsp4HI GCNGC 8 cut(s) 60, 382, 779, 936, 1029, 1308, 1398, 1444
FspBI CTAG 4 cut(s) 138, 501, 939, 944
GlaI GCGC 3 cut(s) 63, 398, 484
GluI GCNGC 8 cut(s) 60, 382, 779, 936, 1029, 1308, 1398, 1444
GsaI CCCAGC 2 cut(s) 102, 465
GsuI CTGGAG 1 cut(s) 1181
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 5 cut(s) 59, 92, 119, 280, 1298
HapII CCGG 5 cut(s) 12, 18, 36, 1462, 1482
HgaI GACGC 1 cut(s) 806
HhaI GCGC 3 cut(s) 64, 399, 485
Hin6I GCGC 3 cut(s) 62, 397, 483
HinP1I GCGC 3 cut(s) 62, 397, 483
HincII GTYRAC 1 cut(s) 1257
HindII GTYRAC 1 cut(s) 1257
HindIII AAGCTT 1 cut(s) 200
HpaI GTTAAC 1 cut(s) 1257
HpaII CCGG 5 cut(s) 12, 18, 36, 1462, 1482
HphI GGTGA 4 cut(s) 153, 238, 433, 661
Hpy166II GTNNAC 2 cut(s) 1257, 1534
Hpy188III TCNNGA 9 cut(s) 18, 206, 579, 695, 956, 980, 1049, 1078, 1566
Hpy8I GTNNAC 2 cut(s) 1257, 1534
Hpy99I CGWCG 3 cut(s) 70, 83, 1514
HpyAV CCTTC 4 cut(s) 37, 552, 668, 1078
HpyCH4III ACNGT 5 cut(s) 79, 311, 378, 905, 1273
HpyCH4IV ACGT 3 cut(s) 72, 551, 871
HpyCH4V TGCA 7 cut(s) 129, 921, 968, 1391, 1411, 1470, 1517
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 104, 175, 378, 1304, 1316, 1397
HpyF3I CTNAG 8 cut(s) 165, 342, 414, 468, 532, 645, 879, 1146
HpySE526I ACGT 3 cut(s) 72, 551, 871
HspAI GCGC 3 cut(s) 62, 397, 483
Kpn2I TCCGGA 1 cut(s) 17
KspAI GTTAAC 1 cut(s) 1257
LmnI GCTCC 5 cut(s) 20, 913, 1200, 1341, 1509
Lsp1109I GCAGC 6 cut(s) 790, 922, 1015, 1319, 1409, 1455
LweI GCATC 4 cut(s) 511, 589, 875, 1504
MaeI CTAG 4 cut(s) 138, 501, 939, 944
MaeII ACGT 3 cut(s) 72, 551, 871
MaeIII GTNAC 8 cut(s) 73, 85, 700, 852, 905, 989, 1007, 1380
MboII GAAGA 8 cut(s) 241, 332, 518, 650, 695, 711, 1093, 1426
MflI RGATCY 2 cut(s) 338, 1119
MhlI GDGCHC 2 cut(s) 105, 1363
MlsI TGGCCA 1 cut(s) 280
MluCI AATT 4 cut(s) 302, 811, 984, 1096
MluNI TGGCCA 1 cut(s) 280
MlyI GAGTC 7 cut(s) 303, 381, 602, 608, 617, 623, 1160
MmeI TCCRAC 1 cut(s) 537
Mox20I TGGCCA 1 cut(s) 280
MroI TCCGGA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 811
MscI TGGCCA 1 cut(s) 280
MseI TTAA 3 cut(s) 219, 305, 1256
Msp20I TGGCCA 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 781
MspI CCGG 5 cut(s) 12, 18, 36, 1462, 1482
MspR9I CCNGG 5 cut(s) 487, 998, 1199, 1463, 1483
MvaI CCWGG 3 cut(s) 487, 998, 1199
MvnI CGCG 3 cut(s) 62, 107, 399
MwoI GCNNNNNNNGC 7 cut(s) 89, 104, 175, 378, 1304, 1316, 1397
NciI CCSGG 2 cut(s) 1463, 1483
NdeI CATATG 1 cut(s) 964
NlaIV GGNNCC 3 cut(s) 16, 915, 1121
NmuCI GTSAC 6 cut(s) 73, 85, 700, 852, 905, 1007
NspI RCATGY 2 cut(s) 155, 1480
NspV TTCGAA 1 cut(s) 1263
PagI TCATGA 3 cut(s) 1048, 1077, 1565
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 1401
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 6 cut(s) 438, 455, 491, 652, 716, 823
Pfl23II CGTACG 1 cut(s) 69
PfoI TCCNGGA 1 cut(s) 1461
PkrI GCNGC 8 cut(s) 61, 383, 780, 937, 1030, 1309, 1399, 1445
PleI GAGTC 7 cut(s) 302, 381, 602, 608, 617, 623, 1160
PpsI GAGTC 7 cut(s) 302, 381, 602, 608, 617, 623, 1160
Ppu21I YACGTR 1 cut(s) 73
PshAI GACNNNNGTC 1 cut(s) 737
Psp6I CCWGG 3 cut(s) 485, 996, 1197
PspFI CCCAGC 2 cut(s) 98, 461
PspGI CCWGG 3 cut(s) 485, 996, 1197
PspLI CGTACG 1 cut(s) 69
PspN4I GGNNCC 3 cut(s) 16, 915, 1121
PspPI GGNCC 1 cut(s) 1296
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 2 cut(s) 338, 1119
RsaI GTAC 2 cut(s) 71, 550
RsaNI GTAC 2 cut(s) 70, 549
SaqAI TTAA 3 cut(s) 219, 305, 1256
SatI GCNGC 8 cut(s) 60, 382, 779, 936, 1029, 1308, 1398, 1444
Sau96I GGNCC 1 cut(s) 1296
SchI GAGTC 7 cut(s) 303, 381, 602, 608, 617, 623, 1160
ScrFI CCNGG 5 cut(s) 487, 998, 1199, 1463, 1483
SduI GDGCHC 2 cut(s) 105, 1363
SfaNI GCATC 4 cut(s) 511, 589, 875, 1504
SfcI CTRYAG 1 cut(s) 1023
SfuI TTCGAA 1 cut(s) 1263
SmlI CTYRAG 2 cut(s) 727, 840
SmoI CTYRAG 2 cut(s) 727, 840
SpeI ACTAGT 1 cut(s) 943
Sse9I AATT 4 cut(s) 302, 811, 984, 1096
SspMI CTAG 4 cut(s) 138, 501, 939, 944
StyD4I CCNGG 5 cut(s) 485, 996, 1197, 1461, 1481
StyI CCWWGG 3 cut(s) 93, 289, 708
TaaI ACNGT 5 cut(s) 79, 311, 378, 905, 1273
TaiI ACGT 3 cut(s) 75, 554, 874
TaqI TCGA 5 cut(s) 205, 1090, 1263, 1431, 1509
TasI AATT 4 cut(s) 302, 811, 984, 1096
TauI GCSGC 2 cut(s) 62, 384
TfiI GAWTC 6 cut(s) 438, 455, 491, 652, 716, 823
Tru1I TTAA 3 cut(s) 219, 305, 1256
Tru9I TTAA 3 cut(s) 219, 305, 1256
TscAI CASTG 3 cut(s) 136, 247, 383
TseFI GTSAC 6 cut(s) 73, 85, 700, 852, 905, 1007
TseI GCWGC 6 cut(s) 778, 935, 1028, 1307, 1397, 1443
Tsp45I GTSAC 6 cut(s) 73, 85, 700, 852, 905, 1007
TspDTI ATGAA 5 cut(s) 19, 315, 729, 1066, 1094
TspGWI ACGGA 2 cut(s) 749, 1393
TspRI CASTG 3 cut(s) 136, 247, 383
XagI CCTNNNNNAGG 1 cut(s) 1283
XceI RCATGY 2 cut(s) 155, 1480
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 811
XspI CTAG 4 cut(s) 138, 501, 939, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.