Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000110.1

Orthogroup ID

OG0007764

Physical Location & Seq

Genomic Coordinates Reverse (-)

216576 .. 217580

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000110.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atggtctcgccggaaaagaaagcacttaactctgactcatctgactcagactcttctgtagaatctgaggtgattcaggcttgcccctcatgtgaagaaaaggaaaagaatgattctgacatgactaccaaggatgatgtatctcccttgaggacagaagtccaatccacgctaaccagtgaggattttagcacatggaagcggatcatacgccttgatgcagtacgaactaatgcagattggatcccttactccccaactcaagctgaagtatcagaggatagggcacgacggtctgctgaggctgttgggttgaaggattacgatcacctggagccttgtagagttttccatgctgctcgactggttgctattcttgaagcatatgcactgtatgaccccgaaattggttactgccagggtatgagtgatctactttctcctatagcagctgtaatgacagaggatcatgaggctttctggtgttttgtgggtttcatgaagaaggctcgacataattttaggctcgacgagctagggatccgaaggcagttgcatattgtttctaagattatcagatgcaaggactcccatctttacaggcacttggagaagctccaggctgaggattgcttctttgtttataggatggtggtcgtgctatttaggagggagttgacatttgaccagacaatatgcctgtgggaggtaatgtgggcagatcaagcagccgttagggctgggattggaaaatctgcatggagcagaatcaggcaacgagccccaccaacagaagatttattactttatgcaatcgcagcttcagtattgcagaaaaggaagctgataatagagaagtatagcagcatggatgagatcattagggagtgcaatagcatgtctgggcaacttgatatatggaagcttctggatgatgcgcatgacttggtggtaaaccttcatgacaagatagagacatccatctctgcaccatcccttagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

334

Amino Acids

38.2

Weight (kDa)

5.31

Isoelectric Point (pI)

56.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49350 AT5G24390
fragaria_vesca	FvH4_7g32540 FvH4_7g32540 FvH4_7g32540
malus_domestica	MD01G1226100.v1.1 MD07G1296600.v1.1
prunus_persica	Prupe.2G316200_v2.0.a1 Prupe.2G316200_v2.0.a1
pyrus_communis	pycom01g23470 pycom07g26930
rosa_chinensis	RchiOBHm_Chr1g0382381
rosa_laevigata	RLG00000026182
rosa_multiflora	Rmu_co8387727.1_g000001 Rmu_sc0000110.1_g000043
rosa_roxburghii	Rroxscaffold_4G00278150
rosa_rugosa	Rorug01G0433800 Rorug01G0433800 Rorug01G0433900
rosa_samantha	Rh1AG458600 Rh1BG414900 Rh1CG429000 Rh1DG447000
rosa_wichuraiana	Rw1G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	939
AciI	CCGC	1 cut(s)	202
AclWI	GGATC	6 cut(s)	212, 238, 251, 474, 535, 548
AcuI	CTGAAG	2 cut(s)	288, 807
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	407, 625, 706
AgsI	TTSAA	2 cut(s)	316, 380
AjnI	CCWGG	3 cut(s)	330, 417, 618
AluBI	AGCT	8 cut(s)	266, 452, 535, 616, 821, 844, 925, 1002
AluI	AGCT	8 cut(s)	266, 452, 535, 616, 821, 844, 925, 1002
Alw26I	GTCTC	2 cut(s)	10, 968
AlwI	GGATC	6 cut(s)	212, 238, 251, 474, 535, 548
ApeKI	GCWGC	5 cut(s)	356, 449, 728, 818, 864
AspLEI	GCGC	1 cut(s)	940
AsuHPI	GGTGA	2 cut(s)	82, 320
BaeGI	GKGCMC	1 cut(s)	289
BamHI	GGATCC	2 cut(s)	243, 540
BanII	GRGCYC	1 cut(s)	784
BarI	GAAGNNNNNNTAC	2 cut(s)	786, 818
BbvCI	CCTCAGC	2 cut(s)	300, 624
BbvI	GCAGC	5 cut(s)	343, 461, 740, 830, 876
BccI	CCATC	4 cut(s)	600, 643, 989, 1000
BceAI	ACGGC	1 cut(s)	716
BciT130I	CCWGG	3 cut(s)	332, 419, 620
BcoDI	GTCTC	2 cut(s)	10, 968
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	2 cut(s)	57, 444
BglI	GCCNNNNNGGC	1 cut(s)	737
BisI	GCNGC	5 cut(s)	357, 450, 729, 819, 865
BlsI	GCNGC	5 cut(s)	358, 451, 730, 820, 866
Bme1390I	CCNGG	3 cut(s)	332, 419, 620
BmiI	GGNNCC	3 cut(s)	245, 336, 542
BmrFI	CCNGG	3 cut(s)	332, 419, 620
BmsI	GCATC	3 cut(s)	208, 569, 925
BoxI	GACNNNNGTC	1 cut(s)	158
BpmI	CTGGAG	2 cut(s)	353, 602
Bpu10I	CCTNAGC	3 cut(s)	300, 624, 998
BpuEI	CTTGAG	2 cut(s)	169, 246
BsaBI	GATNNNNATC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	129, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	698, 728
Bsc4I	CCNNNNNNNGG	3 cut(s)	407, 625, 706
Bse1I	ACTGG	2 cut(s)	177, 369
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	3 cut(s)	332, 419, 620
BseDI	CCNNGG	2 cut(s)	129, 418
BseGI	GGATG	6 cut(s)	139, 654, 877, 937, 977, 992
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	407, 625, 706
BseMII	CTCAG	4 cut(s)	57, 60, 291, 615
BseNI	ACTGG	2 cut(s)	177, 369
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	5 cut(s)	343, 461, 740, 830, 876
BseYI	CCCAGC	1 cut(s)	740
BsgI	GTGCAG	1 cut(s)	972
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	3 cut(s)	407, 625, 706
BsmAI	GTCTC	2 cut(s)	10, 968
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	289, 784
Bsp143I	GATC	8 cut(s)	204, 243, 325, 430, 466, 540, 721, 876
BspACI	CCGC	1 cut(s)	202
BspCNI	CTCAG	4 cut(s)	58, 59, 292, 616
BspHI	TCATGA	3 cut(s)	469, 498, 961
BspLI	GGNNCC	3 cut(s)	245, 336, 542
BspPI	GGATC	6 cut(s)	212, 238, 251, 474, 535, 548
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	177, 369
BssECI	CCNNGG	2 cut(s)	129, 418
BssMI	GATC	8 cut(s)	204, 243, 325, 430, 466, 540, 721, 876
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	3 cut(s)	332, 419, 620
Bst4CI	ACNGT	2 cut(s)	294, 393
Bst6I	CTCTTC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	6 cut(s)	46, 66, 300, 567, 624, 998
BstENI	CCTNNNNNAGG	1 cut(s)	704
BstF5I	GGATG	6 cut(s)	139, 654, 877, 937, 977, 992
BstHHI	GCGC	1 cut(s)	940
BstKTI	GATC	8 cut(s)	207, 246, 328, 433, 469, 543, 724, 879
BstMAI	GTCTC	2 cut(s)	10, 968
BstMBI	GATC	8 cut(s)	204, 243, 325, 430, 466, 540, 721, 876
BstMWI	GCNNNNNNNGC	4 cut(s)	532, 725, 737, 818
BstNI	CCWGG	3 cut(s)	332, 419, 620
BstNSI	RCATGY	1 cut(s)	901
BstPAI	GACNNNNGTC	1 cut(s)	158
BstSCI	CCNGG	3 cut(s)	330, 417, 618
BstSFI	CTRYAG	2 cut(s)	57, 444
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	5 cut(s)	343, 461, 740, 830, 876
BstX2I	RGATCY	2 cut(s)	243, 540
BstYI	RGATCY	2 cut(s)	243, 540
BtsCI	GGATG	6 cut(s)	139, 654, 877, 937, 977, 992
BtsIMutI	CAGTG	2 cut(s)	184, 389
Cac8I	GCNNGC	1 cut(s)	82
CciI	TCATGA	3 cut(s)	469, 498, 961
CfoI	GCGC	1 cut(s)	940
Csp6I	GTAC	1 cut(s)	224
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	6 cut(s)	46, 66, 300, 567, 624, 998
DpnI	GATC	8 cut(s)	206, 245, 327, 432, 468, 542, 723, 878
DpnII	GATC	8 cut(s)	204, 243, 325, 430, 466, 540, 721, 876
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	784
Eco31I	GGTCTC	1 cut(s)	10
Eco57I	CTGAAG	2 cut(s)	288, 807
EcoNI	CCTNNNNNAGG	1 cut(s)	704
EcoRII	CCWGG	3 cut(s)	330, 417, 618
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	784
ErhI	CCWWGG	1 cut(s)	129
FauNDI	CATATG	1 cut(s)	385
Fnu4HI	GCNGC	5 cut(s)	357, 450, 729, 819, 865
FokI	GGATG	6 cut(s)	146, 661, 884, 944, 964, 979
FriOI	GRGCYC	1 cut(s)	784
Fsp4HI	GCNGC	5 cut(s)	357, 450, 729, 819, 865
FspAI	RTGCGCAY	1 cut(s)	939
FspBI	CTAG	1 cut(s)	536
FspI	TGCGCA	1 cut(s)	939
GlaI	GCGC	1 cut(s)	939
GluI	GCNGC	5 cut(s)	357, 450, 729, 819, 865
GsaI	CCCAGC	1 cut(s)	744
GsuI	CTGGAG	2 cut(s)	353, 602
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	1 cut(s)	940
Hin6I	GCGC	1 cut(s)	938
HinP1I	GCGC	1 cut(s)	938
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	8 cut(s)	35, 44, 50, 62, 73, 113, 587, 768
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	2 cut(s)	82, 320
Hpy166II	GTNNAC	2 cut(s)	678, 955
Hpy188I	TCNGA	8 cut(s)	34, 43, 49, 67, 118, 277, 545, 578
Hpy188III	TCNNGA	5 cut(s)	377, 470, 499, 929, 962
Hpy8I	GTNNAC	2 cut(s)	678, 955
Hpy99I	CGWCG	2 cut(s)	294, 533
HpyAV	CCTTC	4 cut(s)	310, 499, 540, 968
HpyCH4III	ACNGT	2 cut(s)	294, 393
HpyF10VI	GCNNNNNNNGC	4 cut(s)	532, 725, 737, 818
HpyF3I	CTNAG	6 cut(s)	46, 66, 300, 567, 624, 998
HspAI	GCGC	1 cut(s)	938
Kzo9I	GATC	8 cut(s)	204, 243, 325, 430, 466, 540, 721, 876
LmnI	GCTCC	3 cut(s)	334, 621, 762
Lsp1109I	GCAGC	5 cut(s)	343, 461, 740, 830, 876
LweI	GCATC	3 cut(s)	208, 569, 925
MaeI	CTAG	1 cut(s)	536
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	8 cut(s)	206, 245, 327, 432, 468, 542, 723, 878
MboI	GATC	8 cut(s)	204, 243, 325, 430, 466, 540, 721, 876
MboII	GAAGA	4 cut(s)	45, 107, 514, 806
MflI	RGATCY	2 cut(s)	243, 540
MhlI	GDGCHC	2 cut(s)	289, 784
MluCI	AATT	2 cut(s)	405, 517
MlyI	GAGTC	4 cut(s)	29, 38, 44, 581
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	332, 419, 620
MvaI	CCWGG	3 cut(s)	332, 419, 620
MwoI	GCNNNNNNNGC	4 cut(s)	532, 725, 737, 818
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	8 cut(s)	204, 243, 325, 430, 466, 540, 721, 876
NlaIV	GGNNCC	3 cut(s)	245, 336, 542
NsbI	TGCGCA	1 cut(s)	939
NspI	RCATGY	1 cut(s)	901
PagI	TCATGA	3 cut(s)	469, 498, 961
PfeI	GAWTC	4 cut(s)	62, 73, 113, 768
PkrI	GCNGC	5 cut(s)	358, 451, 730, 820, 866
PleI	GAGTC	4 cut(s)	29, 38, 44, 581
PpsI	GAGTC	4 cut(s)	29, 38, 44, 581
PshAI	GACNNNNGTC	1 cut(s)	158
Psp6I	CCWGG	3 cut(s)	330, 417, 618
PspFI	CCCAGC	1 cut(s)	740
PspGI	CCWGG	3 cut(s)	330, 417, 618
PspN4I	GGNNCC	3 cut(s)	245, 336, 542
PsuI	RGATCY	2 cut(s)	243, 540
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	5 cut(s)	357, 450, 729, 819, 865
Sau3AI	GATC	8 cut(s)	204, 243, 325, 430, 466, 540, 721, 876
SchI	GAGTC	4 cut(s)	29, 38, 44, 581
ScrFI	CCNGG	3 cut(s)	332, 419, 620
SduI	GDGCHC	2 cut(s)	289, 784
SfaNI	GCATC	3 cut(s)	208, 569, 925
SfcI	CTRYAG	2 cut(s)	57, 444
SmlI	CTYRAG	2 cut(s)	148, 261
SmoI	CTYRAG	2 cut(s)	148, 261
Sse9I	AATT	2 cut(s)	405, 517
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	3 cut(s)	330, 417, 618
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	294, 393
TaqI	TCGA	3 cut(s)	361, 511, 528
TasI	AATT	2 cut(s)	405, 517
TfiI	GAWTC	4 cut(s)	62, 73, 113, 768
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	184, 396
TseI	GCWGC	5 cut(s)	356, 449, 728, 818, 864
TspDTI	ATGAA	3 cut(s)	487, 515, 950
TspRI	CASTG	2 cut(s)	184, 396
XagI	CCTNNNNNAGG	1 cut(s)	704
XceI	RCATGY	1 cut(s)	901
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.