FvH4_7g32540

GTPase-activating protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
23381628 .. 23385663
4036 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32540.t3

Sequence Viewer

Length: 1632 bp
ATGAGAGCTCTAAGACGAAGTCAGACTTCGTTGCCTTCGAATTCTTCATCTCCTTCTTCGTCATCTTCGTCGTCGTCGTCGTCGTATTCGTGGGTTCAGTTGCGTTCGGTTCTGTTAGTAGTAACCTCTTCCTCACCGGCTCATTGTTCTTCTTCCTCGGATCGGGCTCGTCTTAAGTCACCCTGGTCCCGCCGGAAAAGAAAGCATGCTCTTTCACTTAACCAATGGAGACATTTCTTTACACCAGATGGAAGGCTTCGCGATGGTGGAGTTAAATTGGTGAAAAAAGTTCGCAGTGGGGGTGTTGATCCAAGTATTAGGGCGGAGGTCTGGCCATTTCTCCTTGGAGTCTATGATTTGAACAGTTCGAAAGAAGAAAGGGATATAGTCAAATCTCAGAAAAGAAAGGAATATGAGAAACTACGCAGACAGTGCCGTCGGGTTATAAAGTGCATCAATGGGAGCTCTAAGTTAAATGGGGACAGTTGCCCTGAGATGGATTCTCCTAGCTCCGAGGACGTGGTTAGTGCCAGGGAGTCCCTTTCTAGTGAAGAAAGAATTGCAGATTCTGAATACTCAGATGACCCGTCCACTTTATTGTTGGATGGAGATGAGACTTCAAGACGAAACATGAATGCTGATTCCAAAGCACTCAACTCAGACTCATCCGACTCAGACTCTTCTGTAGAATCTGAGGTGATTCAGTCTCGCCCCTCGTGTGAAGGAAACGAAAAGAGTGATCCTGACATGACTACCAAGGATGATGTATCTCCCTTGAGGACAAAAATCCAATCAACGCTAACCAGTGAGGATTTTAGCACATGGAAGCGGATCATACGCCTTGATGCAGTACGAACTAATGCTGATTGGATTCCGTACTCCCCAACTCAAGCTGAAGTATCGAATGATAGGGCACGGCGGTCTGCTGAGGCTGTTGGGTTGAAGGATTATGATCACTTGGAGCCTTGTAGAGTTTTCCATGCTGCTAGACTGGTTGCTATTCTTGAAGCATATGCACTGTATGACCCAGAAATTGGTTACTGCCAGGGTATGAGTGATCTACTTTCTCCTATAGCTGCTGTAATGACAGAGGATCACGAGGCTTTTTGGTGTTTTGTGGGTTTCATGAAGAAGGCTCGACATAATTTTAGGCTTGACGAGCTAGGGATCCGAAGGCAGTTGCATATAGTTTCTAAGATTATCAGATGCAAAGACTCCCATCTTTACAGGCACTTGGAGAAGCTCCAGGCTGAGGATTGCTTTTTCGTCTATAGGATGGTGGTTGTGCTGTTCAGGAGGGAGTTGACATTTGATCAGACAATATGTCTGTGGGAGGTAATGTGGGCAGATCAAGCAGCTGTTAGGGCTGGGATTGGAAAATCTGCATGGAGCAGAATCAGGCAACGAGCCCCACCAACGGAAGATTTATTACTTTATGCAATCGCAGCTTCAGTATTGCAGAAAAGGAAGTTGATAATAGAGAAGTATAGCAGCATGGATGAAATCATTAGGGAGTGTAATAGCATGTCTGGGCAACTTGATATATGGAAGCTCCTGGATGATGCACATGACTTGGTGGTAAACCTCCATGACAAGATAGAGACATCCATCTCTGCGCCATCTCTTAGCTAA

Protein Analysis

544

Amino Acids

61.52

Weight (kDa)

7.91

Isoelectric Point (pI)

63.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 322 - 442 1.4e-29 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 322 - 440 1.3e-14 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
AasI GACNNNNNNGTC 1 cut(s) 435
AccB7I CCANNNNNTGG 1 cut(s) 1034
AccII CGCG 1 cut(s) 261
AciI CCGC 4 cut(s) 190, 323, 829, 919
AclWI GGATC 7 cut(s) 168, 302, 734, 839, 1101, 1162, 1175
AcoI YGGCCR 1 cut(s) 332
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 2 cut(s) 915, 1434
AfaI GTAC 2 cut(s) 852, 878
AfiI CCNNNNNNNGG 5 cut(s) 162, 496, 1034, 1252, 1417
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 4 cut(s) 361, 621, 943, 1007
AhdI GACNNNNNGTC 1 cut(s) 1323
AjiI CACGTC 1 cut(s) 520
AjnI CCWGG 5 cut(s) 182, 530, 1044, 1245, 1554
Alw21I GWGCWC 2 cut(s) 10, 467
Alw26I GTCTC 4 cut(s) 223, 608, 711, 1595
AlwI GGATC 7 cut(s) 168, 302, 734, 839, 1101, 1162, 1175
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 5 cut(s) 983, 1076, 1355, 1445, 1491
ApoI RAATTY 1 cut(s) 40
AspLEI GCGC 1 cut(s) 1618
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 4 cut(s) 126, 171, 292, 709
AsuII TTCGAA 2 cut(s) 38, 368
AvaII GGWCC 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 916
BalI TGGCCA 1 cut(s) 334
BamHI GGATCC 1 cut(s) 1167
BanII GRGCYC 4 cut(s) 10, 169, 467, 1411
BarI GAAGNNNNNNTAC 2 cut(s) 1413, 1445
BauI CACGAG 2 cut(s) 715, 1097
Bbv12I GWGCWC 2 cut(s) 10, 467
BbvCI CCTCAGC 2 cut(s) 927, 1251
BbvI GCAGC 5 cut(s) 970, 1063, 1367, 1457, 1503
BccI CCATC 8 cut(s) 242, 257, 490, 599, 1227, 1270, 1616, 1627
BceAI ACGGC 2 cut(s) 420, 932
BciT130I CCWGG 5 cut(s) 184, 532, 1046, 1247, 1556
BclI TGATCA 2 cut(s) 952, 1312
BcoDI GTCTC 4 cut(s) 223, 608, 711, 1595
BfaI CTAG 4 cut(s) 507, 546, 987, 1163
BfmI CTRYAG 3 cut(s) 684, 1071, 1270
BfrI CTTAAG 1 cut(s) 173
BisI GCNGC 5 cut(s) 984, 1077, 1356, 1446, 1492
BlsI GCNGC 5 cut(s) 985, 1078, 1357, 1447, 1493
Bme1390I CCNGG 5 cut(s) 184, 532, 1046, 1247, 1556
Bme18I GGWCC 1 cut(s) 186
BmeRI GACNNNNNGTC 1 cut(s) 1323
BmgBI CACGTC 1 cut(s) 520
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 3 cut(s) 188, 963, 1169
BmrFI CCNGG 5 cut(s) 184, 532, 1046, 1247, 1556
BmsI GCATC 4 cut(s) 462, 835, 1196, 1552
BpmI CTGGAG 1 cut(s) 1229
Bpu10I CCTNAGC 2 cut(s) 927, 1251
Bpu14I TTCGAA 2 cut(s) 38, 368
BpuEI CTTGAG 2 cut(s) 796, 873
BsaBI GATNNNNATC 1 cut(s) 951
BsaJI CCNNGG 7 cut(s) 156, 182, 343, 513, 531, 756, 1045
BsaXI ACNNNNNCTCC 2 cut(s) 1325, 1355
Bsc4I CCNNNNNNNGG 5 cut(s) 162, 496, 1034, 1252, 1417
Bse118I RCCGGY 1 cut(s) 136
Bse1I ACTGG 2 cut(s) 804, 996
Bse8I GATNNNNATC 1 cut(s) 951
BseBI CCWGG 5 cut(s) 184, 532, 1046, 1247, 1556
BseDI CCNNGG 7 cut(s) 156, 182, 343, 513, 531, 756, 1045
BseGI GGATG 7 cut(s) 610, 665, 766, 1281, 1504, 1564, 1604
BseJI GATNNNNATC 1 cut(s) 951
BseLI CCNNNNNNNGG 5 cut(s) 162, 496, 1034, 1252, 1417
BseMII CTCAG 8 cut(s) 410, 483, 591, 672, 684, 687, 918, 1242
BseNI ACTGG 2 cut(s) 804, 996
BseSI GKGCMC 1 cut(s) 916
BseXI GCAGC 5 cut(s) 970, 1063, 1367, 1457, 1503
BseYI CCCAGC 1 cut(s) 1367
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 334
BsiHKAI GWGCWC 2 cut(s) 10, 467
BsiSI CCGG 2 cut(s) 137, 193
BslFI GGGAC 3 cut(s) 172, 494, 523
BslI CCNNNNNNNGG 5 cut(s) 162, 496, 1034, 1252, 1417
BsmAI GTCTC 4 cut(s) 223, 608, 711, 1595
BsmFI GGGAC 3 cut(s) 172, 494, 523
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 1 cut(s) 334
Bsp119I TTCGAA 2 cut(s) 38, 368
Bsp1286I GDGCHC 5 cut(s) 10, 169, 467, 916, 1411
Bsp68I TCGCGA 1 cut(s) 261
BspACI CCGC 4 cut(s) 190, 323, 829, 919
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 8 cut(s) 409, 484, 590, 671, 685, 686, 919, 1243
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 1 cut(s) 1125
BspLI GGNNCC 3 cut(s) 188, 963, 1169
BspPI GGATC 7 cut(s) 168, 302, 734, 839, 1101, 1162, 1175
BspT104I TTCGAA 2 cut(s) 38, 368
BspTI CTTAAG 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 136
BsrI ACTGG 2 cut(s) 804, 996
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 7 cut(s) 156, 182, 343, 513, 531, 756, 1045
BssSI CACGAG 2 cut(s) 715, 1097
BssT1I CCWWGG 2 cut(s) 343, 756
Bst2BI CACGAG 2 cut(s) 715, 1097
Bst2UI CCWGG 5 cut(s) 184, 532, 1046, 1247, 1556
Bst4CI ACNGT 4 cut(s) 365, 432, 485, 1020
Bst6I CTCTTC 2 cut(s) 133, 685
BstAFI CTTAAG 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 432
BstBI TTCGAA 2 cut(s) 38, 368
BstC8I GCNNGC 1 cut(s) 207
BstF5I GGATG 7 cut(s) 610, 665, 766, 1281, 1504, 1564, 1604
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 1618
BstMAI GTCTC 4 cut(s) 223, 608, 711, 1595
BstMWI GCNNNNNNNGC 5 cut(s) 432, 1159, 1352, 1364, 1445
BstNI CCWGG 5 cut(s) 184, 532, 1046, 1247, 1556
BstNSI RCATGY 2 cut(s) 209, 1528
BstSCI CCNGG 5 cut(s) 182, 530, 1044, 1245, 1554
BstSFI CTRYAG 3 cut(s) 684, 1071, 1270
BstSLI GKGCMC 1 cut(s) 916
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 5 cut(s) 970, 1063, 1367, 1457, 1503
BstX2I RGATCY 1 cut(s) 1167
BstYI RGATCY 1 cut(s) 1167
BsuRI GGCC 1 cut(s) 334
BtgZI GCGATG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 520
BtsCI GGATG 7 cut(s) 610, 665, 766, 1281, 1504, 1564, 1604
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 4 cut(s) 301, 437, 811, 1016
BtuMI TCGCGA 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 207
CaiI CAGNNNCTG 1 cut(s) 569
CciI TCATGA 1 cut(s) 1125
CfoI GCGC 1 cut(s) 1618
Cfr10I RCCGGY 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 2 cut(s) 851, 877
CviQI GTAC 2 cut(s) 851, 877
DrdI GACNNNNNNGTC 1 cut(s) 435
DriI GACNNNNNGTC 1 cut(s) 1323
DseDI GACNNNNNNGTC 1 cut(s) 435
EaeI YGGCCR 1 cut(s) 332
Eam1104I CTCTTC 2 cut(s) 133, 685
Eam1105I GACNNNNNGTC 1 cut(s) 1323
EarI CTCTTC 2 cut(s) 133, 685
EciI GGCGGA 1 cut(s) 338
Ecl136II GAGCTC 2 cut(s) 8, 465
Eco130I CCWWGG 2 cut(s) 343, 756
Eco24I GRGCYC 4 cut(s) 10, 169, 467, 1411
Eco47I GGWCC 1 cut(s) 186
Eco53kI GAGCTC 2 cut(s) 8, 465
Eco57I CTGAAG 2 cut(s) 915, 1434
EcoICRI GAGCTC 2 cut(s) 8, 465
EcoRI GAATTC 1 cut(s) 40
EcoRII CCWGG 5 cut(s) 182, 530, 1044, 1245, 1554
EcoT14I CCWWGG 2 cut(s) 343, 756
EcoT38I GRGCYC 4 cut(s) 10, 169, 467, 1411
ErhI CCWWGG 2 cut(s) 343, 756
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 3 cut(s) 172, 494, 523
FauI CCCGC 1 cut(s) 197
FauNDI CATATG 1 cut(s) 1012
FbaI TGATCA 2 cut(s) 952, 1312
Fnu4HI GCNGC 5 cut(s) 984, 1077, 1356, 1446, 1492
FokI GGATG 7 cut(s) 617, 652, 773, 1288, 1511, 1571, 1591
FriOI GRGCYC 4 cut(s) 10, 169, 467, 1411
Fsp4HI GCNGC 5 cut(s) 984, 1077, 1356, 1446, 1492
FspBI CTAG 4 cut(s) 507, 546, 987, 1163
GlaI GCGC 1 cut(s) 1617
GluI GCNGC 5 cut(s) 984, 1077, 1356, 1446, 1492
GsaI CCCAGC 1 cut(s) 1371
GsuI CTGGAG 1 cut(s) 1229
HaeIII GGCC 1 cut(s) 334
HapII CCGG 2 cut(s) 137, 193
HhaI GCGC 1 cut(s) 1618
Hin6I GCGC 1 cut(s) 1616
HinP1I GCGC 1 cut(s) 1616
HincII GTYRAC 1 cut(s) 1305
HindII GTYRAC 1 cut(s) 1305
HpaII CCGG 2 cut(s) 137, 193
HphI GGTGA 4 cut(s) 126, 171, 292, 709
Hpy166II GTNNAC 3 cut(s) 591, 1305, 1582
Hpy188III TCNNGA 7 cut(s) 260, 621, 743, 1004, 1097, 1126, 1294
Hpy8I GTNNAC 3 cut(s) 591, 1305, 1582
Hpy99I CGWCG 6 cut(s) 73, 76, 79, 82, 85, 441
HpyAV CCTTC 7 cut(s) 45, 63, 246, 716, 937, 1126, 1167
HpyCH4III ACNGT 4 cut(s) 365, 432, 485, 1020
HpyCH4IV ACGT 1 cut(s) 519
HpyF10VI GCNNNNNNNGC 5 cut(s) 432, 1159, 1352, 1364, 1445
HpySE526I ACGT 1 cut(s) 519
HspAI GCGC 1 cut(s) 1616
Ksp22I TGATCA 2 cut(s) 952, 1312
LmnI GCTCC 6 cut(s) 462, 515, 961, 1248, 1389, 1557
Lsp1109I GCAGC 5 cut(s) 970, 1063, 1367, 1457, 1503
LweI GCATC 4 cut(s) 462, 835, 1196, 1552
MaeI CTAG 4 cut(s) 507, 546, 987, 1163
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 3 cut(s) 121, 177, 1037
MflI RGATCY 1 cut(s) 1167
MhlI GDGCHC 5 cut(s) 10, 169, 467, 916, 1411
MlsI TGGCCA 1 cut(s) 334
MluCI AATT 5 cut(s) 40, 275, 558, 1032, 1144
MluNI TGGCCA 1 cut(s) 334
MlyI GAGTC 6 cut(s) 357, 545, 656, 665, 671, 1208
MmeI TCCRAC 2 cut(s) 582, 693
Mox20I TGGCCA 1 cut(s) 334
MscI TGGCCA 1 cut(s) 334
MseI TTAA 4 cut(s) 174, 219, 273, 473
Msp20I TGGCCA 1 cut(s) 334
MspA1I CMGCKG 1 cut(s) 1358
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 2 cut(s) 137, 193
MspR9I CCNGG 5 cut(s) 184, 532, 1046, 1247, 1556
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 5 cut(s) 184, 532, 1046, 1247, 1556
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 5 cut(s) 432, 1159, 1352, 1364, 1445
NdeI CATATG 1 cut(s) 1012
NlaIV GGNNCC 3 cut(s) 188, 963, 1169
NmuCI GTSAC 1 cut(s) 177
NruI TCGCGA 1 cut(s) 261
NspI RCATGY 2 cut(s) 209, 1528
NspV TTCGAA 2 cut(s) 38, 368
PaeI GCATGC 1 cut(s) 209
PagI TCATGA 1 cut(s) 1125
PcsI WCGNNNNNNNCGW 6 cut(s) 35, 65, 74, 77, 80, 86
PctI GAATGC 1 cut(s) 640
PfeI GAWTC 7 cut(s) 500, 566, 641, 689, 700, 871, 1395
PflFI GACNNNGTC 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 1034
PfoI TCCNGGA 1 cut(s) 1554
PkrI GCNGC 5 cut(s) 985, 1078, 1357, 1447, 1493
PleI GAGTC 6 cut(s) 356, 544, 656, 665, 671, 1208
PpsI GAGTC 6 cut(s) 356, 544, 656, 665, 671, 1208
PsiI TTATAA 1 cut(s) 446
Psp124BI GAGCTC 2 cut(s) 10, 467
Psp6I CCWGG 5 cut(s) 182, 530, 1044, 1245, 1554
PspFI CCCAGC 1 cut(s) 1367
PspGI CCWGG 5 cut(s) 182, 530, 1044, 1245, 1554
PspN4I GGNNCC 3 cut(s) 188, 963, 1169
PspPI GGNCC 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 1167
PsyI GACNNNGTC 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 1358
RruI TCGCGA 1 cut(s) 261
RsaI GTAC 2 cut(s) 852, 878
RsaNI GTAC 2 cut(s) 851, 877
SacI GAGCTC 2 cut(s) 10, 467
SaqAI TTAA 4 cut(s) 174, 219, 273, 473
SatI GCNGC 5 cut(s) 984, 1077, 1356, 1446, 1492
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 6 cut(s) 357, 545, 656, 665, 671, 1208
ScrFI CCNGG 5 cut(s) 184, 532, 1046, 1247, 1556
SduI GDGCHC 5 cut(s) 10, 169, 467, 916, 1411
SfaNI GCATC 4 cut(s) 462, 835, 1196, 1552
SfcI CTRYAG 3 cut(s) 684, 1071, 1270
SfuI TTCGAA 2 cut(s) 38, 368
SinI GGWCC 1 cut(s) 186
SmlI CTYRAG 3 cut(s) 173, 775, 888
SmoI CTYRAG 3 cut(s) 173, 775, 888
SphI GCATGC 1 cut(s) 209
Sse9I AATT 5 cut(s) 40, 275, 558, 1032, 1144
SsiI CCGC 4 cut(s) 190, 323, 829, 919
SspMI CTAG 4 cut(s) 507, 546, 987, 1163
SstI GAGCTC 2 cut(s) 10, 467
StyD4I CCNGG 5 cut(s) 182, 530, 1044, 1245, 1554
StyI CCWWGG 2 cut(s) 343, 756
TaaI ACNGT 4 cut(s) 365, 432, 485, 1020
TaiI ACGT 1 cut(s) 522
TaqI TCGA 4 cut(s) 38, 368, 902, 1138
TasI AATT 5 cut(s) 40, 275, 558, 1032, 1144
TfiI GAWTC 7 cut(s) 500, 566, 641, 689, 700, 871, 1395
Tru1I TTAA 4 cut(s) 174, 219, 273, 473
Tru9I TTAA 4 cut(s) 174, 219, 273, 473
TscAI CASTG 4 cut(s) 301, 437, 811, 1023
TseFI GTSAC 1 cut(s) 177
TseI GCWGC 5 cut(s) 983, 1076, 1355, 1445, 1491
Tsp45I GTSAC 1 cut(s) 177
TspDTI ATGAA 5 cut(s) 36, 647, 1114, 1142, 1515
TspGWI ACGGA 2 cut(s) 864, 1433
TspRI CASTG 4 cut(s) 301, 437, 811, 1023
Tth111I GACNNNGTC 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 1034
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 40
XceI RCATGY 2 cut(s) 209, 1528
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XspI CTAG 4 cut(s) 507, 546, 987, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.