MD01G1226100.v1.1

GTPase-activating protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
31656378 .. 31660447
4070 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1226100.v1.1.491

Sequence Viewer

Length: 1614 bp
ATGAGAGCTCTACGACGAACTCACACTTCGTCGTCGCCTTCGAGCTCGAATTCATCTCCTTCTTCGTCTTCGTCGTCGTCTTCGTGGATTTATTTGCGTTCGGTTCTGTTAGTCGTGTCATCTTCTTCACCAGCTCATTGTTCTTCCTCTGATCGGGTTCGTCTTAAGTCGCCTTGGTCCCGCAGGAAAAGAAAACATGCCCTTTCACCTCAGCAATGGAGGCTTTTCTTTACGCCTGATGGAAAGCTTCGAGATGGTGGAGTTAAGTTGGTGAAGAAAGTTCGCAGTGGGGGTGTTGATCCAAGTATTAGGGCAGAAGTTTGGCCATTCCTCCTTGGAGTCTATGAATTAAACAGTTCAAAAGAAGAAAGAGATGTTGTAAGATCTCAGAAAAGAAAGGAATATGAGAAACTCCGCAGACAGTGCCGCCGACTCACAAAGCGCAAAAATGATAGCTCCAAGTTGAATGGGGACAGTTGTAGATTCACCCATGATACAGATTCACCCAGCTCTGAGGATGTGGTTAGCGCCAGGGAATCCCTTTCTAGTGAAGATAAGATACCAGATGCTGAATACTCAGATGACCCTTCCAGTACGTTGTTGGATGGAGATGATGATGGTTCAAGAGAAAACACAAATGCGGATGCCAAAGACTCTGACTCATCTGACTCGGACTCCTCTGAAGAACCTGAGGTGATTCAGGCTTTCCCCTCATGTGAAGGGAGGGAAGAAAATGATCCTGATGTGACTTCCAAGGATGAATCTTCTCCCTTGAGGACGGAAGTCCAACCAAAGCTAAACAGTGAGGATTTTGCCACATGGCAGCGGATCATACGCCTTGATGCAATACGAACTAATTCAGATTGGATTCCGCACTCCCCATCTCAAGCTGAAGTGTCACACGATAGGGCATCACGTTCTGCTGAGGCTGTTGGGTTGAAAGATTACAGTCACTTGGAGCCTTGCAGAATTTTCCATGCTGCTAGACTAGTTGCTATTCTTGAAGCATATGCACTCTATGATCCCGAAATTGGTTACTGCCAGGGTATGAGTGACCTGCTTTCTCCTATAGCTGCTGTAATAACAGAGGATCACGAGGCTTTCTGGTGTTTTGTCGGTTTCATGAAGAAGGCTCGACATAATTTTAGGCTTGACGAGGTAGGGATCCGAAAGCAGTTGAGTATCGTTTCTAAGATTATCAAATGTAAGGACTCCCACCTATACAGGCACTTGGAGAAGCTCCAGGCGGAGGATTGCTTTTTCGTTTATCGGATGGTGGTTGTGCTATTTAGAAGAGAGTTAACATTCGAACAGACAGTATGCCTCTGGGAGGTAATGTGGGCCGATCAAGCAGCCATTAGGGCAGGGATCGGAAAATCTGCGTGGAGCAGGATAAGGCAACGAGCCCCACCAACAGACGATTTGTTACTTTTTGCAATCGCAGCTTCTGTGTTGCAGAAGAGGAAACTGATAATCGAAAAGTACAGCAGCATGGATGAGATTATCCGGGAGTGCAACAGCATGTCCGGGCAACTTGATATATGGAAGCTCCTCGACGATGCACATGACTTGGTGGTAAACCTCCATGACAAGATAGAGACATCTTTCTCATGA

Protein Analysis

538

Amino Acids

60.9

Weight (kDa)

6.31

Isoelectric Point (pI)

60.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 329 - 449 1.2e-28 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 329 - 447 2.2e-13 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1065
AciI CCGC 7 cut(s) 181, 415, 427, 641, 826, 872, 1247
AclWI GGATC 8 cut(s) 293, 731, 836, 1016, 1098, 1159, 1172, 1376
AcoI YGGCCR 1 cut(s) 323
AcsI RAATTY 2 cut(s) 49, 969
AcuI CTGAAG 2 cut(s) 702, 912
AfaI GTAC 2 cut(s) 595, 1484
AfiI CCNNNNNNNGG 4 cut(s) 153, 1031, 1249, 1330
AflII CTTAAG 1 cut(s) 164
AgsI TTSAA 5 cut(s) 360, 466, 624, 940, 1004
AhlI ACTAGT 1 cut(s) 988
AjnI CCWGG 3 cut(s) 530, 1041, 1242
Alw21I GWGCWC 2 cut(s) 10, 47
Alw26I GTCTC 1 cut(s) 1592
AlwI GGATC 8 cut(s) 293, 731, 836, 1016, 1098, 1159, 1172, 1376
AlwNI CAGNNNCTG 2 cut(s) 569, 1448
AoxI GGCC 2 cut(s) 323, 1341
ApeKI GCWGC 6 cut(s) 823, 980, 1073, 1352, 1442, 1488
ApoI RAATTY 2 cut(s) 49, 969
Asp700I GAANNNNTTC 1 cut(s) 856
AspLEI GCGC 2 cut(s) 444, 530
AspS9I GGNCC 2 cut(s) 177, 1341
AsuC2I CCSGG 2 cut(s) 1508, 1528
AsuHPI GGTGA 6 cut(s) 120, 198, 283, 478, 495, 706
AsuII TTCGAA 1 cut(s) 1308
AvaII GGWCC 1 cut(s) 177
AxyI CCTNAGG 1 cut(s) 690
BalI TGGCCA 1 cut(s) 325
BamHI GGATCC 1 cut(s) 1164
BanII GRGCYC 3 cut(s) 10, 47, 1408
BarI GAAGNNNNNNTAC 2 cut(s) 543, 575
BauI CACGAG 1 cut(s) 1094
BbsI GAAGAC 2 cut(s) 60, 72
Bbv12I GWGCWC 2 cut(s) 10, 47
BbvCI CCTCAGC 2 cut(s) 210, 924
BbvI GCAGC 6 cut(s) 835, 967, 1060, 1364, 1454, 1500
BccI CCATC 6 cut(s) 233, 248, 599, 611, 889, 1267
BciT130I CCWGG 3 cut(s) 532, 1043, 1244
BcnI CCSGG 2 cut(s) 1508, 1528
BcoDI GTCTC 1 cut(s) 1592
BcuI ACTAGT 1 cut(s) 988
BfaI CTAG 3 cut(s) 546, 984, 989
BfmI CTRYAG 1 cut(s) 1068
BfoI RGCGCY 1 cut(s) 531
BfrI CTTAAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 1065
BglI GCCNNNNNGGC 1 cut(s) 1361
BglII AGATCT 1 cut(s) 383
BisI GCNGC 7 cut(s) 427, 824, 981, 1074, 1353, 1443, 1489
BlsI GCNGC 7 cut(s) 428, 825, 982, 1075, 1354, 1444, 1490
Bme1390I CCNGG 5 cut(s) 532, 1043, 1244, 1508, 1528
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 2 cut(s) 177, 1341
BmiI GGNNCC 3 cut(s) 179, 960, 1166
BmrFI CCNGG 5 cut(s) 532, 1043, 1244, 1508, 1528
BmsI GCATC 5 cut(s) 556, 634, 832, 920, 1549
BoxI GACNNNNGTC 1 cut(s) 782
BpiI GAAGAC 2 cut(s) 60, 72
BpmI CTGGAG 1 cut(s) 1226
Bpu10I CCTNAGC 2 cut(s) 210, 924
Bpu14I TTCGAA 1 cut(s) 1308
BpuEI CTTGAG 2 cut(s) 793, 870
BpuMI CCSGG 2 cut(s) 1508, 1528
BsaJI CCNNGG 5 cut(s) 173, 334, 531, 753, 1042
BsaXI ACNNNNNCTCC 4 cut(s) 659, 689, 1322, 1352
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 1031, 1249, 1330
Bse1I ACTGG 1 cut(s) 591
Bse21I CCTNAGG 1 cut(s) 690
Bse3DI GCAATG 1 cut(s) 221
BseBI CCWGG 3 cut(s) 532, 1043, 1244
BseDI CCNNGG 5 cut(s) 173, 334, 531, 753, 1042
BseGI GGATG 6 cut(s) 523, 610, 649, 763, 1278, 1501
BseLI CCNNNNNNNGG 4 cut(s) 153, 1031, 1249, 1330
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 6 cut(s) 224, 401, 504, 591, 681, 915
BseNI ACTGG 1 cut(s) 591
BseRI GAGGAG 2 cut(s) 667, 1541
BseXI GCAGC 6 cut(s) 835, 967, 1060, 1364, 1454, 1500
BseYI CCCAGC 1 cut(s) 506
BshFI GGCC 2 cut(s) 325, 1343
BsiHKAI GWGCWC 2 cut(s) 10, 47
BsiSI CCGG 2 cut(s) 1507, 1527
BslFI GGGAC 2 cut(s) 163, 485
BslI CCNNNNNNNGG 4 cut(s) 153, 1031, 1249, 1330
BsmAI GTCTC 1 cut(s) 1592
BsmFI GGGAC 2 cut(s) 163, 485
BsnI GGCC 2 cut(s) 325, 1343
Bsp119I TTCGAA 1 cut(s) 1308
Bsp1286I GDGCHC 3 cut(s) 10, 47, 1408
BspACI CCGC 7 cut(s) 181, 415, 427, 641, 826, 872, 1247
BspANI GGCC 2 cut(s) 325, 1343
BspCNI CTCAG 6 cut(s) 223, 400, 505, 590, 682, 916
BspHI TCATGA 2 cut(s) 1122, 1610
BspLI GGNNCC 3 cut(s) 179, 960, 1166
BspMI ACCTGC 1 cut(s) 1065
BspPI GGATC 8 cut(s) 293, 731, 836, 1016, 1098, 1159, 1172, 1376
BspT104I TTCGAA 1 cut(s) 1308
BspTI CTTAAG 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 5 cut(s) 173, 334, 531, 753, 1042
BssSI CACGAG 1 cut(s) 1094
BssT1I CCWWGG 3 cut(s) 173, 334, 753
Bst2BI CACGAG 1 cut(s) 1094
Bst2UI CCWGG 3 cut(s) 532, 1043, 1244
Bst4CI ACNGT 6 cut(s) 356, 423, 476, 803, 950, 1318
Bst6I CTCTTC 2 cut(s) 1288, 1454
BstAFI CTTAAG 1 cut(s) 164
BstAPI GCANNNNNTGC 1 cut(s) 423
BstBI TTCGAA 1 cut(s) 1308
BstDEI CTNAG 7 cut(s) 210, 387, 513, 577, 690, 924, 1191
BstENI CCTNNNNNAGG 1 cut(s) 1328
BstF5I GGATG 6 cut(s) 523, 610, 649, 763, 1278, 1501
BstH2I RGCGCY 1 cut(s) 531
BstHHI GCGC 2 cut(s) 444, 530
BstMAI GTCTC 1 cut(s) 1592
BstMWI GCNNNNNNNGC 5 cut(s) 220, 423, 1349, 1361, 1442
BstNI CCWGG 3 cut(s) 532, 1043, 1244
BstNSI RCATGY 2 cut(s) 200, 1525
BstPAI GACNNNNGTC 1 cut(s) 782
BstSCI CCNGG 5 cut(s) 530, 1041, 1242, 1506, 1526
BstSFI CTRYAG 1 cut(s) 1068
BstV1I GCAGC 6 cut(s) 835, 967, 1060, 1364, 1454, 1500
BstV2I GAAGAC 2 cut(s) 60, 72
BstX2I RGATCY 2 cut(s) 383, 1164
BstYI RGATCY 2 cut(s) 383, 1164
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 2 cut(s) 325, 1343
BtsCI GGATG 6 cut(s) 523, 610, 649, 763, 1278, 1501
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 3 cut(s) 292, 428, 808
BveI ACCTGC 1 cut(s) 1065
CaiI CAGNNNCTG 2 cut(s) 569, 1448
CciI TCATGA 2 cut(s) 1122, 1610
CfoI GCGC 2 cut(s) 444, 530
Cfr13I GGNCC 2 cut(s) 177, 1341
Csp6I GTAC 2 cut(s) 594, 1483
CviQI GTAC 2 cut(s) 594, 1483
DdeI CTNAG 7 cut(s) 210, 387, 513, 577, 690, 924, 1191
EaeI YGGCCR 1 cut(s) 323
Eam1104I CTCTTC 2 cut(s) 1288, 1454
EarI CTCTTC 2 cut(s) 1288, 1454
EciI GGCGGA 1 cut(s) 1262
Ecl136II GAGCTC 2 cut(s) 8, 45
Eco130I CCWWGG 3 cut(s) 173, 334, 753
Eco24I GRGCYC 3 cut(s) 10, 47, 1408
Eco47I GGWCC 1 cut(s) 177
Eco53kI GAGCTC 2 cut(s) 8, 45
Eco57I CTGAAG 2 cut(s) 702, 912
Eco81I CCTNAGG 1 cut(s) 690
EcoICRI GAGCTC 2 cut(s) 8, 45
EcoNI CCTNNNNNAGG 1 cut(s) 1328
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 3 cut(s) 530, 1041, 1242
EcoT14I CCWWGG 3 cut(s) 173, 334, 753
EcoT38I GRGCYC 3 cut(s) 10, 47, 1408
ErhI CCWWGG 3 cut(s) 173, 334, 753
FaqI GGGAC 2 cut(s) 163, 485
FauI CCCGC 1 cut(s) 188
FauNDI CATATG 1 cut(s) 1009
Fnu4HI GCNGC 7 cut(s) 427, 824, 981, 1074, 1353, 1443, 1489
FokI GGATG 6 cut(s) 530, 617, 656, 770, 1285, 1508
FriOI GRGCYC 3 cut(s) 10, 47, 1408
Fsp4HI GCNGC 7 cut(s) 427, 824, 981, 1074, 1353, 1443, 1489
FspBI CTAG 3 cut(s) 546, 984, 989
GlaI GCGC 2 cut(s) 443, 529
GluI GCNGC 7 cut(s) 427, 824, 981, 1074, 1353, 1443, 1489
GsaI CCCAGC 1 cut(s) 510
GsuI CTGGAG 1 cut(s) 1226
HaeII RGCGCY 1 cut(s) 531
HaeIII GGCC 2 cut(s) 325, 1343
HapII CCGG 2 cut(s) 1507, 1527
HhaI GCGC 2 cut(s) 444, 530
Hin6I GCGC 2 cut(s) 442, 528
HinP1I GCGC 2 cut(s) 442, 528
HincII GTYRAC 1 cut(s) 1302
HindII GTYRAC 1 cut(s) 1302
HindIII AAGCTT 1 cut(s) 245
HpaI GTTAAC 1 cut(s) 1302
HpaII CCGG 2 cut(s) 1507, 1527
HphI GGTGA 6 cut(s) 120, 198, 283, 478, 495, 706
Hpy166II GTNNAC 2 cut(s) 1302, 1579
Hpy188III TCNNGA 8 cut(s) 251, 624, 740, 1001, 1025, 1094, 1123, 1611
Hpy8I GTNNAC 2 cut(s) 1302, 1579
Hpy99I CGWCG 6 cut(s) 18, 34, 37, 76, 79, 1559
HpyAV CCTTC 5 cut(s) 48, 69, 597, 713, 1123
HpyCH4III ACNGT 6 cut(s) 356, 423, 476, 803, 950, 1318
HpyCH4IV ACGT 2 cut(s) 596, 916
HpyCH4V TGCA 7 cut(s) 845, 966, 1013, 1436, 1456, 1515, 1562
HpyF10VI GCNNNNNNNGC 5 cut(s) 220, 423, 1349, 1361, 1442
HpyF3I CTNAG 7 cut(s) 210, 387, 513, 577, 690, 924, 1191
HpySE526I ACGT 2 cut(s) 596, 916
HspAI GCGC 2 cut(s) 442, 528
KspAI GTTAAC 1 cut(s) 1302
LmnI GCTCC 5 cut(s) 461, 958, 1245, 1386, 1554
Lsp1109I GCAGC 6 cut(s) 835, 967, 1060, 1364, 1454, 1500
LweI GCATC 5 cut(s) 556, 634, 832, 920, 1549
MaeI CTAG 3 cut(s) 546, 984, 989
MaeII ACGT 2 cut(s) 596, 916
MaeIII GTNAC 6 cut(s) 745, 897, 950, 1034, 1052, 1425
MflI RGATCY 2 cut(s) 383, 1164
MhlI GDGCHC 3 cut(s) 10, 47, 1408
MlsI TGGCCA 1 cut(s) 325
MluCI AATT 6 cut(s) 49, 347, 856, 969, 1029, 1141
MluNI TGGCCA 1 cut(s) 325
MlyI GAGTC 7 cut(s) 348, 426, 647, 653, 662, 668, 1205
MmeI TCCRAC 2 cut(s) 582, 811
Mox20I TGGCCA 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 856
MscI TGGCCA 1 cut(s) 325
MseI TTAA 4 cut(s) 165, 264, 350, 1301
Msp20I TGGCCA 1 cut(s) 325
MspA1I CMGCKG 1 cut(s) 826
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 2 cut(s) 1507, 1527
MspR9I CCNGG 5 cut(s) 532, 1043, 1244, 1508, 1528
MvaI CCWGG 3 cut(s) 532, 1043, 1244
MwoI GCNNNNNNNGC 5 cut(s) 220, 423, 1349, 1361, 1442
NciI CCSGG 2 cut(s) 1508, 1528
NdeI CATATG 1 cut(s) 1009
NlaIV GGNNCC 3 cut(s) 179, 960, 1166
NmuCI GTSAC 4 cut(s) 745, 897, 950, 1052
NspI RCATGY 2 cut(s) 200, 1525
NspV TTCGAA 1 cut(s) 1308
PagI TCATGA 2 cut(s) 1122, 1610
PcsI WCGNNNNNNNCGW 3 cut(s) 38, 71, 80
PdmI GAANNNNTTC 1 cut(s) 856
PfeI GAWTC 6 cut(s) 483, 500, 536, 697, 761, 868
PfoI TCCNGGA 1 cut(s) 1506
PkrI GCNGC 7 cut(s) 428, 825, 982, 1075, 1354, 1444, 1490
PleI GAGTC 7 cut(s) 347, 426, 647, 653, 662, 668, 1205
PpsI GAGTC 7 cut(s) 347, 426, 647, 653, 662, 668, 1205
PshAI GACNNNNGTC 1 cut(s) 782
Psp124BI GAGCTC 2 cut(s) 10, 47
Psp6I CCWGG 3 cut(s) 530, 1041, 1242
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 3 cut(s) 530, 1041, 1242
PspN4I GGNNCC 3 cut(s) 179, 960, 1166
PspPI GGNCC 2 cut(s) 177, 1341
PstNI CAGNNNCTG 2 cut(s) 569, 1448
PsuI RGATCY 2 cut(s) 383, 1164
RsaI GTAC 2 cut(s) 595, 1484
RsaNI GTAC 2 cut(s) 594, 1483
SacI GAGCTC 2 cut(s) 10, 47
SaqAI TTAA 4 cut(s) 165, 264, 350, 1301
SatI GCNGC 7 cut(s) 427, 824, 981, 1074, 1353, 1443, 1489
Sau96I GGNCC 2 cut(s) 177, 1341
SchI GAGTC 7 cut(s) 348, 426, 647, 653, 662, 668, 1205
ScrFI CCNGG 5 cut(s) 532, 1043, 1244, 1508, 1528
SduI GDGCHC 3 cut(s) 10, 47, 1408
SfaNI GCATC 5 cut(s) 556, 634, 832, 920, 1549
SfcI CTRYAG 1 cut(s) 1068
SfuI TTCGAA 1 cut(s) 1308
SinI GGWCC 1 cut(s) 177
SmlI CTYRAG 3 cut(s) 164, 772, 885
SmoI CTYRAG 3 cut(s) 164, 772, 885
SpeI ACTAGT 1 cut(s) 988
Sse9I AATT 6 cut(s) 49, 347, 856, 969, 1029, 1141
SsiI CCGC 7 cut(s) 181, 415, 427, 641, 826, 872, 1247
SspMI CTAG 3 cut(s) 546, 984, 989
SstI GAGCTC 2 cut(s) 10, 47
StyD4I CCNGG 5 cut(s) 530, 1041, 1242, 1506, 1526
StyI CCWWGG 3 cut(s) 173, 334, 753
TaaI ACNGT 6 cut(s) 356, 423, 476, 803, 950, 1318
TaiI ACGT 2 cut(s) 599, 919
TaqI TCGA 7 cut(s) 41, 47, 250, 1135, 1308, 1476, 1554
TasI AATT 6 cut(s) 49, 347, 856, 969, 1029, 1141
TatI WGTACW 1 cut(s) 1482
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 6 cut(s) 483, 500, 536, 697, 761, 868
Tru1I TTAA 4 cut(s) 165, 264, 350, 1301
Tru9I TTAA 4 cut(s) 165, 264, 350, 1301
TscAI CASTG 3 cut(s) 292, 428, 808
TseFI GTSAC 4 cut(s) 745, 897, 950, 1052
TseI GCWGC 6 cut(s) 823, 980, 1073, 1352, 1442, 1488
Tsp45I GTSAC 4 cut(s) 745, 897, 950, 1052
TspDTI ATGAA 5 cut(s) 42, 360, 774, 1111, 1139
TspGWI ACGGA 1 cut(s) 794
TspRI CASTG 3 cut(s) 292, 428, 808
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 177
XagI CCTNNNNNAGG 1 cut(s) 1328
XapI RAATTY 2 cut(s) 49, 969
XceI RCATGY 2 cut(s) 200, 1525
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XmnI GAANNNNTTC 1 cut(s) 856
XspI CTAG 3 cut(s) 546, 984, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.