Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007764

Physical Location & Seq

Genomic Coordinates Reverse (-)

35683868 .. 35688124

Gene Structure 4257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1296600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGAGAGCTCTACGACGAACTCAGACTTCCTCGTCGCCTTCGAGCTCGAATTCATCTCATTCTTCGTCTTCGCTGTCGTCGTCGTCGTCGTCTTCGTGGATTTATTTGCGTTCGGTTCTGTTAATCGTGTCCTCTTCCTCACCAGCTCATTGTTCTTCCTCTGATCGCGTTCGTCTTAAGTCACCTTGGTCCCGCAGGAAAAGAAAACATGCCCTTTCAGCTCAGCAATGGAGGCTTTTCTTTACACCAGATGGAAAGCTTCGCGATGGTGGAGTTAAGTTGGTGAAGAAAGTTCGCAGTGGAGGTGTTGATCCAAGTATTAGAGCAGAAGTTTGGCCATTTCTCCTTGGAGTCTATGAATTAAACAGTTCAAAAGAAGAAAGGGAGATAGTACGATCTCAGAAAAGAAAGGAATATGAGAAACTCCGCAGACAGTGCCGCCGACTCATAAAGCGCGAAAATGATAGCTCTAAGTTGAATGGGGACGGTAGTAGATTCACCCATGATACAGGTTCTCCCAGCTCTGAGGATGTGGTTAGCGCCAGGGAATCCCTTTCTAGTGAAGATAAGATACCAGATGTTGAATACTCAGATGACCCTTCCAGTACATTGTTGGATGGAGATGATGATGGTTCAAGAGAAAACACAAATGCTGATTCCAAAGCAGTAAACTCTGACTCGTCTGACTCGGATTCCTCTGAAGAACCTGAGGTGATTCATGCTTTCCCCTCATGTGAAGGGAGGGAAGAAAATGATCATGACGTGACTTCCAAGGATGAATCTTCTCCCTTGAGGACAGAGGTCCAATCAAATCTAAACATTGAGGATTTTGCCACCTGGCAGCGGATCATACGCCTTGATGCGGTACGGACTAATTCAGATTGGATTCCGCACGCCCCATCTCAAGCTGAAGTGTCACAGGATAGGGCATCACGTACTGCTGAGGCTGTTGGGTTGAAAGATTACAGTCACTTGGAGCCTTGCAGAATTTTCCATGCTGCTAGACTAGTTGGCATGAGTGACCTGCTTTCTCCTATAGCTGCTGTAATAACAGAGGATCACGAGGCTTTCTGGTGTTTTGTCGGTTTCATGAAGAAGGCTCGACATAATTTTAGGCTTGACGAGGTAGGGATCCGAAGGCAGTTGAGTATCGTTTCTAAAATTATCAAATGCAAGGACTCCCATCTATACAGGCACTTGGAGAAGCTCCAGGCGGAGGATTGCTTTTTCGTTTATAGGATGGTGGTTGTGCTATTTAGGAGGGAGTTGACGTTCGAACAGACAGTATGCCTATGGGAGGTAATGTGGGCCGATCAAGCAGCCATAAGGGCAGGTATCGGAAAATCTGCATGGAGCAGGATAAGGCAACGAGCCCCACCAACAGACGATCTGTTACTCTTCGCCATCGCAGCTTCTGTATTGCAGAAGAGGAAGCTGATAATCGAGAAGTATAGCAGCATGGATGAGATTATCCGGGAGTGCAATAGCATCTCGGGGCAACTCGATATATGGAAGCTCCTGGACGATGCACATGACCTGGTAGTAAACCTCCATGACAAGATAGAGACATCTTTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

527

Amino Acids

59.57

Weight (kDa)

6.59

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	262 - 438	1e-17	Rab-GTPase-TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49350 AT5G24390
fragaria_vesca	FvH4_7g32540 FvH4_7g32540 FvH4_7g32540
malus_domestica	MD01G1226100.v1.1 MD07G1296600.v1.1
prunus_persica	Prupe.2G316200_v2.0.a1 Prupe.2G316200_v2.0.a1
pyrus_communis	pycom01g23470 pycom07g26930
rosa_chinensis	RchiOBHm_Chr1g0382381
rosa_laevigata	RLG00000026182
rosa_multiflora	Rmu_co8387727.1_g000001 Rmu_sc0000110.1_g000043
rosa_roxburghii	Rroxscaffold_4G00278150
rosa_rugosa	Rorug01G0433800 Rorug01G0433800 Rorug01G0433900
rosa_samantha	Rh1AG458600 Rh1BG414900 Rh1CG429000 Rh1DG447000
rosa_wichuraiana	Rw1G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	31
Acc36I	ACCTGC	2 cut(s)	1032, 1322
AccII	CGCG	3 cut(s)	168, 264, 456
AciI	CCGC	7 cut(s)	193, 427, 439, 844, 863, 890, 1214
AclWI	GGATC	5 cut(s)	305, 854, 1065, 1126, 1139
AcoI	YGGCCR	1 cut(s)	335
AcsI	RAATTY	2 cut(s)	49, 987
AcuI	CTGAAG	2 cut(s)	720, 930
AfaI	GTAC	4 cut(s)	393, 607, 867, 937
AfiI	CCNNNNNNNGG	4 cut(s)	843, 862, 1216, 1297
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	5 cut(s)	372, 478, 584, 636, 958
AhlI	ACTAGT	1 cut(s)	1006
AjiI	CACGTC	1 cut(s)	763
AjnI	CCWGG	5 cut(s)	542, 836, 1209, 1518, 1536
AloI	GAACNNNNNNTCC	2 cut(s)	1256, 1288
Alw21I	GWGCWC	2 cut(s)	10, 47
Alw26I	GTCTC	1 cut(s)	1559
AlwI	GGATC	5 cut(s)	305, 854, 1065, 1126, 1139
AlwNI	CAGNNNCTG	1 cut(s)	1415
Ama87I	CYCGRG	1 cut(s)	1492
AoxI	GGCC	2 cut(s)	335, 1308
ApeKI	GCWGC	6 cut(s)	841, 998, 1040, 1319, 1409, 1455
ApoI	RAATTY	2 cut(s)	49, 987
AspLEI	GCGC	2 cut(s)	456, 542
AspS9I	GGNCC	3 cut(s)	189, 802, 1308
AsuC2I	CCSGG	1 cut(s)	1475
AsuHPI	GGTGA	5 cut(s)	132, 174, 295, 490, 724
AsuII	TTCGAA	1 cut(s)	1275
AvaI	CYCGRG	1 cut(s)	1492
AvaII	GGWCC	2 cut(s)	189, 802
AxyI	CCTNAGG	1 cut(s)	708
BalI	TGGCCA	1 cut(s)	337
BamHI	GGATCC	1 cut(s)	1131
BanII	GRGCYC	3 cut(s)	10, 47, 1375
BarI	GAAGNNNNNNTAC	2 cut(s)	555, 587
BauI	CACGAG	1 cut(s)	1061
BbsI	GAAGAC	2 cut(s)	60, 84
Bbv12I	GWGCWC	2 cut(s)	10, 47
BbvCI	CCTCAGC	1 cut(s)	942
BbvI	GCAGC	6 cut(s)	853, 985, 1027, 1331, 1421, 1467
BccI	CCATC	8 cut(s)	245, 260, 611, 623, 907, 1191, 1234, 1412
BciT130I	CCWGG	5 cut(s)	544, 838, 1211, 1520, 1538
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	1475
BcoDI	GTCTC	1 cut(s)	1559
BcuI	ACTAGT	1 cut(s)	1006
BfaI	CTAG	3 cut(s)	558, 1002, 1007
BfmI	CTRYAG	1 cut(s)	1035
BfoI	RGCGCY	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	176
BfuAI	ACCTGC	2 cut(s)	1032, 1322
BglI	GCCNNNNNGGC	1 cut(s)	1328
BisI	GCNGC	7 cut(s)	439, 842, 999, 1041, 1320, 1410, 1456
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	7 cut(s)	440, 843, 1000, 1042, 1321, 1411, 1457
Bme1390I	CCNGG	6 cut(s)	544, 838, 1211, 1475, 1520, 1538
Bme18I	GGWCC	2 cut(s)	189, 802
BmeT110I	CYCGRG	1 cut(s)	1492
BmgBI	CACGTC	1 cut(s)	763
BmgT120I	GGNCC	3 cut(s)	189, 802, 1308
BmiI	GGNNCC	3 cut(s)	191, 978, 1133
BmrFI	CCNGG	6 cut(s)	544, 838, 1211, 1475, 1520, 1538
BmsI	GCATC	4 cut(s)	850, 938, 1497, 1516
BoxI	GACNNNNGTC	1 cut(s)	800
BpiI	GAAGAC	2 cut(s)	60, 84
BpmI	CTGGAG	1 cut(s)	1193
Bpu10I	CCTNAGC	1 cut(s)	942
Bpu1102I	GCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	1275
BpuEI	CTTGAG	2 cut(s)	811, 888
BpuMI	CCSGG	1 cut(s)	1475
BsaAI	YACGTR	1 cut(s)	935
BsaJI	CCNNGG	4 cut(s)	185, 346, 543, 771
BsaXI	ACNNNNNCTCC	6 cut(s)	499, 529, 1256, 1286, 1289, 1319
Bsc4I	CCNNNNNNNGG	4 cut(s)	843, 862, 1216, 1297
Bse1I	ACTGG	1 cut(s)	603
Bse21I	CCTNAGG	1 cut(s)	708
Bse3DI	GCAATG	1 cut(s)	233
BseBI	CCWGG	5 cut(s)	544, 838, 1211, 1520, 1538
BseDI	CCNNGG	4 cut(s)	185, 346, 543, 771
BseGI	GGATG	5 cut(s)	535, 622, 781, 1245, 1468
BseLI	CCNNNNNNNGG	4 cut(s)	843, 862, 1216, 1297
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	7 cut(s)	35, 236, 413, 516, 603, 699, 933
BseNI	ACTGG	1 cut(s)	603
BseXI	GCAGC	6 cut(s)	853, 985, 1027, 1331, 1421, 1467
BseYI	CCCAGC	1 cut(s)	518
Bsh1236I	CGCG	3 cut(s)	168, 264, 456
BshFI	GGCC	2 cut(s)	337, 1310
BsiHKAI	GWGCWC	2 cut(s)	10, 47
BsiHKCI	CYCGRG	1 cut(s)	1492
BsiSI	CCGG	1 cut(s)	1474
BslFI	GGGAC	2 cut(s)	175, 497
BslI	CCNNNNNNNGG	4 cut(s)	843, 862, 1216, 1297
BsmAI	GTCTC	1 cut(s)	1559
BsmFI	GGGAC	2 cut(s)	175, 497
BsnI	GGCC	2 cut(s)	337, 1310
BsoBI	CYCGRG	1 cut(s)	1492
Bsp119I	TTCGAA	1 cut(s)	1275
Bsp1286I	GDGCHC	3 cut(s)	10, 47, 1375
Bsp143I	GATC	9 cut(s)	163, 310, 395, 754, 846, 1057, 1131, 1312, 1387
Bsp1720I	GCTNAGC	1 cut(s)	222
Bsp68I	TCGCGA	1 cut(s)	264
BspACI	CCGC	7 cut(s)	193, 427, 439, 844, 863, 890, 1214
BspANI	GGCC	2 cut(s)	337, 1310
BspCNI	CTCAG	7 cut(s)	34, 235, 412, 517, 602, 700, 934
BspFNI	CGCG	3 cut(s)	168, 264, 456
BspHI	TCATGA	3 cut(s)	757, 1089, 1577
BspLI	GGNNCC	3 cut(s)	191, 978, 1133
BspMI	ACCTGC	2 cut(s)	1032, 1322
BspPI	GGATC	5 cut(s)	305, 854, 1065, 1126, 1139
BspT104I	TTCGAA	1 cut(s)	1275
BspTI	CTTAAG	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	603
BssECI	CCNNGG	4 cut(s)	185, 346, 543, 771
BssMI	GATC	9 cut(s)	163, 310, 395, 754, 846, 1057, 1131, 1312, 1387
BssSI	CACGAG	1 cut(s)	1061
BssT1I	CCWWGG	3 cut(s)	185, 346, 771
Bst2BI	CACGAG	1 cut(s)	1061
Bst2UI	CCWGG	5 cut(s)	544, 838, 1211, 1520, 1538
Bst4CI	ACNGT	5 cut(s)	368, 435, 488, 968, 1285
Bst6I	CTCTTC	3 cut(s)	139, 1403, 1421
BstAFI	CTTAAG	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	435
BstBAI	YACGTR	1 cut(s)	935
BstBI	TTCGAA	1 cut(s)	1275
BstC8I	GCNNGC	1 cut(s)	894
BstDEI	CTNAG	8 cut(s)	21, 222, 399, 471, 525, 589, 708, 942
BstENI	CCTNNNNNAGG	1 cut(s)	1295
BstF5I	GGATG	5 cut(s)	535, 622, 781, 1245, 1468
BstFNI	CGCG	3 cut(s)	168, 264, 456
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	2 cut(s)	456, 542
BstKTI	GATC	9 cut(s)	166, 313, 398, 757, 849, 1060, 1134, 1315, 1390
BstMAI	GTCTC	1 cut(s)	1559
BstMBI	GATC	9 cut(s)	163, 310, 395, 754, 846, 1057, 1131, 1312, 1387
BstMWI	GCNNNNNNNGC	6 cut(s)	218, 232, 435, 1316, 1328, 1409
BstNI	CCWGG	5 cut(s)	544, 838, 1211, 1520, 1538
BstNSI	RCATGY	1 cut(s)	212
BstPAI	GACNNNNGTC	1 cut(s)	800
BstSCI	CCNGG	6 cut(s)	542, 836, 1209, 1473, 1518, 1536
BstSFI	CTRYAG	1 cut(s)	1035
BstUI	CGCG	3 cut(s)	168, 264, 456
BstV1I	GCAGC	6 cut(s)	853, 985, 1027, 1331, 1421, 1467
BstV2I	GAAGAC	2 cut(s)	60, 84
BstX2I	RGATCY	1 cut(s)	1131
BstYI	RGATCY	1 cut(s)	1131
Bsu36I	CCTNAGG	1 cut(s)	708
BsuRI	GGCC	2 cut(s)	337, 1310
BtgZI	GCGATG	2 cut(s)	279, 1390
BtrI	CACGTC	1 cut(s)	763
BtsCI	GGATG	5 cut(s)	535, 622, 781, 1245, 1468
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	304, 440
BtuMI	TCGCGA	1 cut(s)	264
BveI	ACCTGC	2 cut(s)	1032, 1322
Cac8I	GCNNGC	1 cut(s)	894
CaiI	CAGNNNCTG	1 cut(s)	1415
CciI	TCATGA	3 cut(s)	757, 1089, 1577
CfoI	GCGC	2 cut(s)	456, 542
Cfr13I	GGNCC	3 cut(s)	189, 802, 1308
CsiI	ACCWGGT	1 cut(s)	1536
Csp6I	GTAC	4 cut(s)	392, 606, 866, 936
CviQI	GTAC	4 cut(s)	392, 606, 866, 936
DdeI	CTNAG	8 cut(s)	21, 222, 399, 471, 525, 589, 708, 942
DpnI	GATC	9 cut(s)	165, 312, 397, 756, 848, 1059, 1133, 1314, 1389
DpnII	GATC	9 cut(s)	163, 310, 395, 754, 846, 1057, 1131, 1312, 1387
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	335
Eam1104I	CTCTTC	3 cut(s)	139, 1403, 1421
EarI	CTCTTC	3 cut(s)	139, 1403, 1421
EciI	GGCGGA	1 cut(s)	1229
Ecl136II	GAGCTC	2 cut(s)	8, 45
Eco130I	CCWWGG	3 cut(s)	185, 346, 771
Eco24I	GRGCYC	3 cut(s)	10, 47, 1375
Eco47I	GGWCC	2 cut(s)	189, 802
Eco53kI	GAGCTC	2 cut(s)	8, 45
Eco57I	CTGAAG	2 cut(s)	720, 930
Eco81I	CCTNAGG	1 cut(s)	708
Eco88I	CYCGRG	1 cut(s)	1492
EcoICRI	GAGCTC	2 cut(s)	8, 45
EcoNI	CCTNNNNNAGG	1 cut(s)	1295
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	5 cut(s)	542, 836, 1209, 1518, 1536
EcoT14I	CCWWGG	3 cut(s)	185, 346, 771
EcoT38I	GRGCYC	3 cut(s)	10, 47, 1375
ErhI	CCWWGG	3 cut(s)	185, 346, 771
FaqI	GGGAC	2 cut(s)	175, 497
FauI	CCCGC	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	7 cut(s)	439, 842, 999, 1041, 1320, 1410, 1456
FokI	GGATG	5 cut(s)	542, 629, 788, 1252, 1475
FriOI	GRGCYC	3 cut(s)	10, 47, 1375
Fsp4HI	GCNGC	7 cut(s)	439, 842, 999, 1041, 1320, 1410, 1456
FspBI	CTAG	3 cut(s)	558, 1002, 1007
GlaI	GCGC	2 cut(s)	455, 541
GluI	GCNGC	7 cut(s)	439, 842, 999, 1041, 1320, 1410, 1456
GsaI	CCCAGC	1 cut(s)	522
GsuI	CTGGAG	1 cut(s)	1193
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	2 cut(s)	337, 1310
HapII	CCGG	1 cut(s)	1474
HhaI	GCGC	2 cut(s)	456, 542
Hin6I	GCGC	2 cut(s)	454, 540
HinP1I	GCGC	2 cut(s)	454, 540
HincII	GTYRAC	1 cut(s)	1269
HindII	GTYRAC	1 cut(s)	1269
HindIII	AAGCTT	1 cut(s)	257
HpaII	CCGG	1 cut(s)	1474
HphI	GGTGA	5 cut(s)	132, 174, 295, 490, 724
Hpy166II	GTNNAC	3 cut(s)	670, 1269, 1546
Hpy188III	TCNNGA	7 cut(s)	263, 636, 758, 1061, 1090, 1444, 1578
Hpy8I	GTNNAC	3 cut(s)	670, 1269, 1546
Hpy99I	CGWCG	6 cut(s)	18, 37, 82, 85, 88, 91
HpyAV	CCTTC	5 cut(s)	48, 609, 731, 1090, 1131
HpyCH4III	ACNGT	5 cut(s)	368, 435, 488, 968, 1285
HpyCH4IV	ACGT	3 cut(s)	762, 934, 1271
HpyCH4V	TGCA	6 cut(s)	984, 1173, 1349, 1423, 1482, 1529
HpyF10VI	GCNNNNNNNGC	6 cut(s)	218, 232, 435, 1316, 1328, 1409
HpyF3I	CTNAG	8 cut(s)	21, 222, 399, 471, 525, 589, 708, 942
HpySE526I	ACGT	3 cut(s)	762, 934, 1271
HspAI	GCGC	2 cut(s)	454, 540
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	9 cut(s)	163, 310, 395, 754, 846, 1057, 1131, 1312, 1387
LmnI	GCTCC	4 cut(s)	976, 1212, 1353, 1521
Lsp1109I	GCAGC	6 cut(s)	853, 985, 1027, 1331, 1421, 1467
LweI	GCATC	4 cut(s)	850, 938, 1497, 1516
MabI	ACCWGGT	1 cut(s)	1536
MaeI	CTAG	3 cut(s)	558, 1002, 1007
MaeII	ACGT	3 cut(s)	762, 934, 1271
MaeIII	GTNAC	6 cut(s)	180, 763, 915, 968, 1019, 1392
MalI	GATC	9 cut(s)	165, 312, 397, 756, 848, 1059, 1133, 1314, 1389
MboI	GATC	9 cut(s)	163, 310, 395, 754, 846, 1057, 1131, 1312, 1387
MflI	RGATCY	1 cut(s)	1131
MhlI	GDGCHC	3 cut(s)	10, 47, 1375
MlsI	TGGCCA	1 cut(s)	337
MluCI	AATT	6 cut(s)	49, 359, 874, 987, 1108, 1161
MluNI	TGGCCA	1 cut(s)	337
MlyI	GAGTC	5 cut(s)	360, 438, 671, 680, 1172
MmeI	TCCRAC	1 cut(s)	594
Mox20I	TGGCCA	1 cut(s)	337
MscI	TGGCCA	1 cut(s)	337
MseI	TTAA	4 cut(s)	122, 177, 276, 362
Msp20I	TGGCCA	1 cut(s)	337
MspA1I	CMGCKG	1 cut(s)	844
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	1 cut(s)	1474
MspR9I	CCNGG	6 cut(s)	544, 838, 1211, 1475, 1520, 1538
MvaI	CCWGG	5 cut(s)	544, 838, 1211, 1520, 1538
MvnI	CGCG	3 cut(s)	168, 264, 456
MwoI	GCNNNNNNNGC	6 cut(s)	218, 232, 435, 1316, 1328, 1409
NciI	CCSGG	1 cut(s)	1475
NdeII	GATC	9 cut(s)	163, 310, 395, 754, 846, 1057, 1131, 1312, 1387
NlaIV	GGNNCC	3 cut(s)	191, 978, 1133
NmuCI	GTSAC	5 cut(s)	180, 763, 915, 968, 1019
NruI	TCGCGA	1 cut(s)	264
NspI	RCATGY	1 cut(s)	212
NspV	TTCGAA	1 cut(s)	1275
PagI	TCATGA	3 cut(s)	757, 1089, 1577
PcsI	WCGNNNNNNNCGW	5 cut(s)	38, 77, 83, 86, 92
PfeI	GAWTC	7 cut(s)	495, 548, 656, 692, 715, 779, 886
PfoI	TCCNGGA	2 cut(s)	1473, 1518
PkrI	GCNGC	7 cut(s)	440, 843, 1000, 1042, 1321, 1411, 1457
PleI	GAGTC	5 cut(s)	359, 438, 671, 680, 1172
PpsI	GAGTC	5 cut(s)	359, 438, 671, 680, 1172
Ppu21I	YACGTR	1 cut(s)	935
PshAI	GACNNNNGTC	1 cut(s)	800
Psp124BI	GAGCTC	2 cut(s)	10, 47
Psp6I	CCWGG	5 cut(s)	542, 836, 1209, 1518, 1536
PspFI	CCCAGC	1 cut(s)	518
PspGI	CCWGG	5 cut(s)	542, 836, 1209, 1518, 1536
PspN4I	GGNNCC	3 cut(s)	191, 978, 1133
PspPI	GGNCC	3 cut(s)	189, 802, 1308
PstNI	CAGNNNCTG	1 cut(s)	1415
PsuI	RGATCY	1 cut(s)	1131
RruI	TCGCGA	1 cut(s)	264
RsaI	GTAC	4 cut(s)	393, 607, 867, 937
RsaNI	GTAC	4 cut(s)	392, 606, 866, 936
SacI	GAGCTC	2 cut(s)	10, 47
SaqAI	TTAA	4 cut(s)	122, 177, 276, 362
SatI	GCNGC	7 cut(s)	439, 842, 999, 1041, 1320, 1410, 1456
Sau3AI	GATC	9 cut(s)	163, 310, 395, 754, 846, 1057, 1131, 1312, 1387
Sau96I	GGNCC	3 cut(s)	189, 802, 1308
SchI	GAGTC	5 cut(s)	360, 438, 671, 680, 1172
ScrFI	CCNGG	6 cut(s)	544, 838, 1211, 1475, 1520, 1538
SduI	GDGCHC	3 cut(s)	10, 47, 1375
SexAI	ACCWGGT	1 cut(s)	1536
SfaNI	GCATC	4 cut(s)	850, 938, 1497, 1516
SfcI	CTRYAG	1 cut(s)	1035
SfuI	TTCGAA	1 cut(s)	1275
SinI	GGWCC	2 cut(s)	189, 802
SmlI	CTYRAG	3 cut(s)	176, 790, 903
SmoI	CTYRAG	3 cut(s)	176, 790, 903
SpeI	ACTAGT	1 cut(s)	1006
Sse9I	AATT	6 cut(s)	49, 359, 874, 987, 1108, 1161
SsiI	CCGC	7 cut(s)	193, 427, 439, 844, 863, 890, 1214
SspMI	CTAG	3 cut(s)	558, 1002, 1007
SstI	GAGCTC	2 cut(s)	10, 47
StyD4I	CCNGG	6 cut(s)	542, 836, 1209, 1473, 1518, 1536
StyI	CCWWGG	3 cut(s)	185, 346, 771
TaaI	ACNGT	5 cut(s)	368, 435, 488, 968, 1285
TaiI	ACGT	3 cut(s)	765, 937, 1274
TaqI	TCGA	6 cut(s)	41, 47, 1102, 1275, 1443, 1503
TasI	AATT	6 cut(s)	49, 359, 874, 987, 1108, 1161
TatI	WGTACW	1 cut(s)	605
TauI	GCSGC	1 cut(s)	441
TfiI	GAWTC	7 cut(s)	495, 548, 656, 692, 715, 779, 886
Tru1I	TTAA	4 cut(s)	122, 177, 276, 362
Tru9I	TTAA	4 cut(s)	122, 177, 276, 362
TscAI	CASTG	2 cut(s)	304, 440
TseFI	GTSAC	5 cut(s)	180, 763, 915, 968, 1019
TseI	GCWGC	6 cut(s)	841, 998, 1040, 1319, 1409, 1455
Tsp45I	GTSAC	5 cut(s)	180, 763, 915, 968, 1019
TspDTI	ATGAA	6 cut(s)	42, 372, 707, 792, 1078, 1106
TspGWI	ACGGA	1 cut(s)	883
TspRI	CASTG	2 cut(s)	304, 440
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	2 cut(s)	189, 802
XagI	CCTNNNNNAGG	1 cut(s)	1295
XapI	RAATTY	2 cut(s)	49, 987
XceI	RCATGY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XspI	CTAG	3 cut(s)	558, 1002, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.