Rw1G041240

GTPase-activating protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
68173780 .. 68176877
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G041240.1

Sequence Viewer

Length: 1635 bp
ATGAGAGCTCTAAGACGAAGTCAGACTTCGTTGCCTTCGAATTCTTCATCTCCTTCTTCATCATCTTCGTCGTCGTCGTCGTCGTCCTATTCGTGGGTTCAGTTGCGTTCGGTTCTGTTAGTCGTAACCTCTTCCTCACCAGCTCATTGTTCTTCCTCCTCCGATCGGGTTCGTCTTAAGTCACCATGGTCTCGCCGGAAAAGAAAGCACGCCCTTTCACTTCAGCAATGGAGACATTTTTTTACACCAGATGGAAGGCTTCGCGACGGTGGAGTCAAATTGGTGAAAAAAGTCCGTAGTGGGGGTGTTGATCCAAGTATTAGGGCGGAGGTTTGGCCATTTCTCCTTGGAGTCCATGATTTAAACAGTTCGAAAGAAGAAAGGGATATAGTAAGATCTCAGAAAAGAAAGGAATATGAGAAACTGCGCAGACAGTGCCGTCGGGTCATAAAGTGCATCAATGGGAGCTCTAAGTTGAACGGGGACAGTTGTCCTGAGACAGATTCTCCTTGCTCTGAGGATGTGGTTAGTGCCAGGGAGTCCCTTTCTAGTGAAGACAGAATCGCAGATTCTGAATACTCAGATGACCCTTCCACTATATTGTTGGATGGAGATGATACTTCAAGACGAAACACAAATGCTGATTCCAAAGCACTTAACTCTGACTCATCTGACTCAGACTCTTCTGTAGAATCTGAGGTGATTCAGGCTTGCCCCTCATGTGAAGAAAAGGAAAAGAATGATTCTGACATGACTACCAAGGATGATGTATCTCCCTTGAGGATAGAAGTCCAATCAACGCTAACCAGTGAGGATTTTAGCACATGGAAGCGGATCATACGCCTTGATGCAGTACGAACTAATGCAGATTGGATCCCTTACTCCCCAACTCAAGCTGAAGTATCAGAGGATAGGGCACGACGGTGTGCTGAGGCTGTTGGGTTGAAGGATTACGATCACCTGGAGCCATGTAGAGTTTTCCATGCTGCTCGACTGGTTGCTATTCTTGAAGCATATGCACTGTATGACCCCGAAATTGGTTACTGCCAGGGTATGAGTGATCTACTTTCTCCTATAGCAGCTGTAATGACAGAGGATCATGAGGCTTTCTGGTGTTTTGTGGGTTTCATGAAGAAGGCTCGACATAATTTTAGGCTCGACGAGCTAGGGATCCGAAGGCAGTTGCATATTGTTTCTAAGATTATCAGATGCAAGGACTCCCATCTTTACAGGCACTTGGAGAAGCTCCAGGCTGAGGATTGCTTCTTTGTTTATAGGATGGTGGTCGTGCTATTTAGGAGGGAGTTGACATTTGACCAGACAATATGCCTGTGGGAGGTAATGTGGGCAGATCAAGCAGCCGTTAGGGCTGGGATTGGAAAATCTGCATGGAGCAGAATCAGGCAACGAGCCCCACCAACAGAAGATTTATTACTTTATGCAATCGCAGCTTCAGTATTGCAGAAAAGGAAGCTGATAATAGAGAAGTATAGCAGCATGGATGAGATCATTAGGGAGTGCAATAGCATGTCTGGGCAACTTGATATATGGAAGCTTCTGGATGATGCACATGACTTGGTGGTAAACCTTCATGACAAGATAGAGACATCCATCTCTGCACCATCCCTTAGCTAA

Protein Analysis

544

Amino Acids

61.64

Weight (kDa)

6.69

Isoelectric Point (pI)

65.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 331 - 451 1.4e-29 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 331 - 449 1.3e-14 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 272, 438
Acc16I TGCGCA 1 cut(s) 428
AccII CGCG 1 cut(s) 264
AciI CCGC 2 cut(s) 326, 832
AclWI GGATC 7 cut(s) 305, 842, 868, 881, 1104, 1165, 1178
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 3 cut(s) 206, 918, 1437
AfaI GTAC 1 cut(s) 855
AfiI CCNNNNNNNGG 6 cut(s) 93, 165, 301, 1037, 1255, 1336
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 4 cut(s) 478, 624, 946, 1010
AjnI CCWGG 4 cut(s) 533, 960, 1047, 1248
AleI CACNNNNGTG 1 cut(s) 922
Alw21I GWGCWC 2 cut(s) 10, 470
Alw26I GTCTC 4 cut(s) 195, 226, 491, 1598
AlwI GGATC 7 cut(s) 305, 842, 868, 881, 1104, 1165, 1178
AlwNI CAGNNNCTG 1 cut(s) 572
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 5 cut(s) 986, 1079, 1358, 1448, 1494
ApoI RAATTY 1 cut(s) 40
AspLEI GCGC 1 cut(s) 429
AsuHPI GGTGA 5 cut(s) 129, 174, 295, 712, 950
AsuII TTCGAA 2 cut(s) 38, 371
BaeGI GKGCMC 1 cut(s) 919
BalI TGGCCA 1 cut(s) 337
BamHI GGATCC 2 cut(s) 873, 1170
BanII GRGCYC 3 cut(s) 10, 470, 1414
BarI GAAGNNNNNNTAC 2 cut(s) 1416, 1448
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 2 cut(s) 10, 470
BbvCI CCTCAGC 2 cut(s) 930, 1254
BbvI GCAGC 5 cut(s) 973, 1091, 1370, 1460, 1506
BccI CCATC 6 cut(s) 245, 602, 1230, 1273, 1619, 1630
BceAI ACGGC 2 cut(s) 423, 1346
BciT130I CCWGG 4 cut(s) 535, 962, 1049, 1250
BcoDI GTCTC 4 cut(s) 195, 226, 491, 1598
BfaI CTAG 2 cut(s) 549, 1166
BfmI CTRYAG 2 cut(s) 687, 1074
BfrI CTTAAG 1 cut(s) 176
BglI GCCNNNNNGGC 1 cut(s) 1367
BglII AGATCT 1 cut(s) 395
BisI GCNGC 5 cut(s) 987, 1080, 1359, 1449, 1495
BlsI GCNGC 5 cut(s) 988, 1081, 1360, 1450, 1496
Bme1390I CCNGG 4 cut(s) 535, 962, 1049, 1250
BmiI GGNNCC 3 cut(s) 875, 966, 1172
BmrFI CCNGG 4 cut(s) 535, 962, 1049, 1250
BmsI GCATC 4 cut(s) 465, 838, 1199, 1555
BoxI GACNNNNGTC 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 561
BpmI CTGGAG 2 cut(s) 983, 1232
Bpu10I CCTNAGC 3 cut(s) 930, 1254, 1628
Bpu14I TTCGAA 2 cut(s) 38, 371
BpuEI CTTGAG 2 cut(s) 799, 876
BsaBI GATNNNNATC 1 cut(s) 954
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 5 cut(s) 185, 346, 534, 759, 1048
BsaXI ACNNNNNCTCC 4 cut(s) 490, 520, 1328, 1358
Bsc4I CCNNNNNNNGG 6 cut(s) 93, 165, 301, 1037, 1255, 1336
Bse1I ACTGG 2 cut(s) 807, 999
Bse3DI GCAATG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 954
BseBI CCWGG 4 cut(s) 535, 962, 1049, 1250
BseDI CCNNGG 5 cut(s) 185, 346, 534, 759, 1048
BseGI GGATG 8 cut(s) 526, 613, 769, 1284, 1507, 1567, 1607, 1622
BseJI GATNNNNATC 1 cut(s) 954
BseLI CCNNNNNNNGG 6 cut(s) 93, 165, 301, 1037, 1255, 1336
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 8 cut(s) 413, 486, 507, 594, 687, 690, 921, 1245
BseNI ACTGG 2 cut(s) 807, 999
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 5 cut(s) 973, 1091, 1370, 1460, 1506
BseYI CCCAGC 1 cut(s) 1370
BsgI GTGCAG 1 cut(s) 1602
Bsh1236I CGCG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 1 cut(s) 337
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 2 cut(s) 10, 470
BsiSI CCGG 1 cut(s) 196
BslFI GGGAC 2 cut(s) 497, 526
BslI CCNNNNNNNGG 6 cut(s) 93, 165, 301, 1037, 1255, 1336
BsmAI GTCTC 4 cut(s) 195, 226, 491, 1598
BsmFI GGGAC 2 cut(s) 497, 526
BsnI GGCC 1 cut(s) 337
Bso31I GGTCTC 1 cut(s) 195
Bsp119I TTCGAA 2 cut(s) 38, 371
Bsp1286I GDGCHC 4 cut(s) 10, 470, 919, 1414
Bsp19I CCATGG 1 cut(s) 185
Bsp68I TCGCGA 1 cut(s) 264
BspACI CCGC 2 cut(s) 326, 832
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 8 cut(s) 412, 487, 508, 593, 688, 689, 922, 1246
BspFNI CGCG 1 cut(s) 264
BspHI TCATGA 3 cut(s) 1099, 1128, 1591
BspLI GGNNCC 3 cut(s) 875, 966, 1172
BspPI GGATC 7 cut(s) 305, 842, 868, 881, 1104, 1165, 1178
BspT104I TTCGAA 2 cut(s) 38, 371
BspTI CTTAAG 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 233
BsrI ACTGG 2 cut(s) 807, 999
BssECI CCNNGG 5 cut(s) 185, 346, 534, 759, 1048
BssT1I CCWWGG 3 cut(s) 185, 346, 759
Bst2UI CCWGG 4 cut(s) 535, 962, 1049, 1250
Bst4CI ACNGT 6 cut(s) 269, 368, 435, 488, 924, 1023
Bst6I CTCTTC 2 cut(s) 136, 688
BstAFI CTTAAG 1 cut(s) 176
BstAPI GCANNNNNTGC 1 cut(s) 435
BstBI TTCGAA 2 cut(s) 38, 371
BstC8I GCNNGC 2 cut(s) 210, 712
BstDSI CCRYGG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 1334
BstF5I GGATG 8 cut(s) 526, 613, 769, 1284, 1507, 1567, 1607, 1622
BstFNI CGCG 1 cut(s) 264
BstHHI GCGC 1 cut(s) 429
BstMAI GTCTC 4 cut(s) 195, 226, 491, 1598
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 5 cut(s) 435, 1162, 1355, 1367, 1448
BstNI CCWGG 4 cut(s) 535, 962, 1049, 1250
BstNSI RCATGY 1 cut(s) 1531
BstPAI GACNNNNGTC 1 cut(s) 489
BstSCI CCNGG 4 cut(s) 533, 960, 1047, 1248
BstSFI CTRYAG 2 cut(s) 687, 1074
BstSLI GKGCMC 1 cut(s) 919
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 5 cut(s) 973, 1091, 1370, 1460, 1506
BstV2I GAAGAC 1 cut(s) 561
BstX2I RGATCY 3 cut(s) 395, 873, 1170
BstYI RGATCY 3 cut(s) 395, 873, 1170
BsuRI GGCC 1 cut(s) 337
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 8 cut(s) 526, 613, 769, 1284, 1507, 1567, 1607, 1622
BtsIMutI CAGTG 3 cut(s) 440, 814, 1019
BtuMI TCGCGA 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 210, 712
CaiI CAGNNNCTG 1 cut(s) 572
CciI TCATGA 3 cut(s) 1099, 1128, 1591
CfoI GCGC 1 cut(s) 429
Csp6I GTAC 1 cut(s) 854
CviQI GTAC 1 cut(s) 854
DraI TTTAAA 1 cut(s) 363
DrdI GACNNNNNNGTC 2 cut(s) 272, 438
DseDI GACNNNNNNGTC 2 cut(s) 272, 438
EaeI YGGCCR 1 cut(s) 335
Eam1104I CTCTTC 2 cut(s) 136, 688
EarI CTCTTC 2 cut(s) 136, 688
EciI GGCGGA 1 cut(s) 341
Ecl136II GAGCTC 2 cut(s) 8, 468
Eco130I CCWWGG 3 cut(s) 185, 346, 759
Eco24I GRGCYC 3 cut(s) 10, 470, 1414
Eco31I GGTCTC 1 cut(s) 195
Eco53kI GAGCTC 2 cut(s) 8, 468
Eco57I CTGAAG 3 cut(s) 206, 918, 1437
EcoICRI GAGCTC 2 cut(s) 8, 468
EcoNI CCTNNNNNAGG 1 cut(s) 1334
EcoRI GAATTC 1 cut(s) 40
EcoRII CCWGG 4 cut(s) 533, 960, 1047, 1248
EcoT14I CCWWGG 3 cut(s) 185, 346, 759
EcoT38I GRGCYC 3 cut(s) 10, 470, 1414
ErhI CCWWGG 3 cut(s) 185, 346, 759
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 2 cut(s) 497, 526
FauNDI CATATG 1 cut(s) 1015
Fnu4HI GCNGC 5 cut(s) 987, 1080, 1359, 1449, 1495
FokI GGATG 8 cut(s) 533, 620, 776, 1291, 1514, 1574, 1594, 1609
FriOI GRGCYC 3 cut(s) 10, 470, 1414
Fsp4HI GCNGC 5 cut(s) 987, 1080, 1359, 1449, 1495
FspBI CTAG 2 cut(s) 549, 1166
FspI TGCGCA 1 cut(s) 428
GlaI GCGC 1 cut(s) 428
GluI GCNGC 5 cut(s) 987, 1080, 1359, 1449, 1495
GsaI CCCAGC 1 cut(s) 1374
GsuI CTGGAG 2 cut(s) 983, 1232
HaeIII GGCC 1 cut(s) 337
HapII CCGG 1 cut(s) 196
HhaI GCGC 1 cut(s) 429
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HincII GTYRAC 1 cut(s) 1308
HindII GTYRAC 1 cut(s) 1308
HindIII AAGCTT 1 cut(s) 1553
HpaII CCGG 1 cut(s) 196
HphI GGTGA 5 cut(s) 129, 174, 295, 712, 950
Hpy166II GTNNAC 2 cut(s) 1308, 1585
Hpy188III TCNNGA 8 cut(s) 263, 494, 624, 1007, 1100, 1129, 1559, 1592
Hpy8I GTNNAC 2 cut(s) 1308, 1585
Hpy99I CGWCG 9 cut(s) 73, 76, 79, 82, 85, 269, 444, 924, 1163
HpyAV CCTTC 8 cut(s) 45, 63, 249, 600, 940, 1129, 1170, 1598
HpyCH4III ACNGT 6 cut(s) 269, 368, 435, 488, 924, 1023
HpyF10VI GCNNNNNNNGC 5 cut(s) 435, 1162, 1355, 1367, 1448
HspAI GCGC 1 cut(s) 427
LmnI GCTCC 4 cut(s) 465, 964, 1251, 1392
Lsp1109I GCAGC 5 cut(s) 973, 1091, 1370, 1460, 1506
LweI GCATC 4 cut(s) 465, 838, 1199, 1555
MaeI CTAG 2 cut(s) 549, 1166
MaeIII GTNAC 3 cut(s) 124, 180, 1040
MflI RGATCY 3 cut(s) 395, 873, 1170
MhlI GDGCHC 4 cut(s) 10, 470, 919, 1414
MlsI TGGCCA 1 cut(s) 337
MluCI AATT 4 cut(s) 40, 278, 1035, 1147
MluNI TGGCCA 1 cut(s) 337
MlyI GAGTC 7 cut(s) 282, 360, 548, 659, 668, 674, 1211
MmeI TCCRAC 1 cut(s) 585
Mox20I TGGCCA 1 cut(s) 337
MscI TGGCCA 1 cut(s) 337
MseI TTAA 3 cut(s) 177, 362, 657
MslI CAYNNNNRTG 1 cut(s) 922
Msp20I TGGCCA 1 cut(s) 337
MspA1I CMGCKG 1 cut(s) 1082
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 4 cut(s) 535, 962, 1049, 1250
MvaI CCWGG 4 cut(s) 535, 962, 1049, 1250
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 5 cut(s) 435, 1162, 1355, 1367, 1448
NcoI CCATGG 1 cut(s) 185
NdeI CATATG 1 cut(s) 1015
NlaIV GGNNCC 3 cut(s) 875, 966, 1172
NmuCI GTSAC 1 cut(s) 180
NruI TCGCGA 1 cut(s) 264
NsbI TGCGCA 1 cut(s) 428
NspI RCATGY 1 cut(s) 1531
NspV TTCGAA 2 cut(s) 38, 371
OliI CACNNNNGTG 1 cut(s) 922
PagI TCATGA 3 cut(s) 1099, 1128, 1591
PcsI WCGNNNNNNNCGW 5 cut(s) 35, 74, 77, 80, 89
PfeI GAWTC 8 cut(s) 503, 561, 569, 644, 692, 703, 743, 1398
PflFI GACNNNGTC 1 cut(s) 18
PkrI GCNGC 5 cut(s) 988, 1081, 1360, 1450, 1496
Ple19I CGATCG 1 cut(s) 166
PleI GAGTC 7 cut(s) 281, 359, 547, 659, 668, 674, 1211
PpsI GAGTC 7 cut(s) 281, 359, 547, 659, 668, 674, 1211
PshAI GACNNNNGTC 1 cut(s) 489
Psp124BI GAGCTC 2 cut(s) 10, 470
Psp6I CCWGG 4 cut(s) 533, 960, 1047, 1248
PspFI CCCAGC 1 cut(s) 1370
PspGI CCWGG 4 cut(s) 533, 960, 1047, 1248
PspN4I GGNNCC 3 cut(s) 875, 966, 1172
PstNI CAGNNNCTG 1 cut(s) 572
PsuI RGATCY 3 cut(s) 395, 873, 1170
PsyI GACNNNGTC 1 cut(s) 18
PvuI CGATCG 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 1082
RruI TCGCGA 1 cut(s) 264
RsaI GTAC 1 cut(s) 855
RsaNI GTAC 1 cut(s) 854
RseI CAYNNNNRTG 1 cut(s) 922
SacI GAGCTC 2 cut(s) 10, 470
SaqAI TTAA 3 cut(s) 177, 362, 657
SatI GCNGC 5 cut(s) 987, 1080, 1359, 1449, 1495
SchI GAGTC 7 cut(s) 282, 360, 548, 659, 668, 674, 1211
ScrFI CCNGG 4 cut(s) 535, 962, 1049, 1250
SduI GDGCHC 4 cut(s) 10, 470, 919, 1414
SfaNI GCATC 4 cut(s) 465, 838, 1199, 1555
SfcI CTRYAG 2 cut(s) 687, 1074
SfuI TTCGAA 2 cut(s) 38, 371
SmiMI CAYNNNNRTG 1 cut(s) 922
SmlI CTYRAG 3 cut(s) 176, 778, 891
SmoI CTYRAG 3 cut(s) 176, 778, 891
Sse9I AATT 4 cut(s) 40, 278, 1035, 1147
SsiI CCGC 2 cut(s) 326, 832
SspMI CTAG 2 cut(s) 549, 1166
SstI GAGCTC 2 cut(s) 10, 470
StyD4I CCNGG 4 cut(s) 533, 960, 1047, 1248
StyI CCWWGG 3 cut(s) 185, 346, 759
TaaI ACNGT 6 cut(s) 269, 368, 435, 488, 924, 1023
TaqI TCGA 5 cut(s) 38, 371, 991, 1141, 1158
TasI AATT 4 cut(s) 40, 278, 1035, 1147
TfiI GAWTC 8 cut(s) 503, 561, 569, 644, 692, 703, 743, 1398
Tru1I TTAA 3 cut(s) 177, 362, 657
Tru9I TTAA 3 cut(s) 177, 362, 657
TscAI CASTG 3 cut(s) 440, 814, 1026
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 5 cut(s) 986, 1079, 1358, 1448, 1494
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 5 cut(s) 36, 48, 1117, 1145, 1580
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 3 cut(s) 440, 814, 1026
Tth111I GACNNNGTC 1 cut(s) 18
Vha464I CTTAAG 1 cut(s) 176
XagI CCTNNNNNAGG 1 cut(s) 1334
XapI RAATTY 1 cut(s) 40
XceI RCATGY 1 cut(s) 1531
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XspI CTAG 2 cut(s) 549, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.