Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009524

Physical Location & Seq

Genomic Coordinates Forward (+)

8515200 .. 8516669

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGATAATCACACAGCTAAAGACATTGGTATGAAGAGAAGTGCTTCTGAGCTGGCTCTACAAGAGTATCTCACTACAAGCCCTCTAGACCCTTGTTTCGACCTCATGAACCGGGATTACACTTGTGAGTTAAGAGATAGTCTTTTGTGGTCTGAGGGATTGTTTCCGGCTGGACCTTTTCGCGATGCACAGTCCTCAATCTGCGAGAATCTGTCAGCTGATAGTCCAGTGTCAGCCAATAAACCTGAGGTAAGAGGAGGAGTTAGGAGAACCACAAGTGGATCTTCTCATGTTAACTCTGATGACGAAGATGCCGAGACAGAAGCAGGGCAATCTGAAATGACTAATGATCCCAATGATCTGAAACGTATTAGAAGGATGAACTCAAACAGGGAATCAGCAAAGAGGTCGAGGAGAAGGAAGCAAGAGTACTTGGTAGATCTTGAGACTCAGGTTGATTCTTTGAAAGGCGATAACTCAACACTGTACAAGCAGCTCATAGACGCAACACAACAGTTTCGTAGCGCTGGAACAAATAACAGAGTTCTCAAATCAGATGTTGAAACTCTGAGAGTCAAGGTGAAACTAGCAGAAGATTTGGTAGCGAGAGGGTCACTCACTAGCAGCTTGAATCAACTTCTACAAACTCATCTAAGTCCACCATCACACTCCATCAGCAGTCTGCACTACACGGGAAATACCTCGCCCGCCATTACAGTCCACAGTGACCAATCTTTGTTCCCTGGAATGACACTTTCTGGACAGAACTCAAGCCCTGGACTTGGTAATGTATCCAGTGAAGCTGTTAGCTGCGTCTCAGACATCTGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

277

Amino Acids

30.41

Weight (kDa)

5.43

Isoelectric Point (pI)

60.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	120 - 166	3.9e-15	bZIP transcription factor
bZIP_2	PF07716	120 - 170	2.6e-08	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24800
fragaria_vesca	FvH4_2g36400 FvH4_2g36400 FvH4_2g36400
malus_domestica	MD08G1123300.v1.1 MD15G1102300.v1.1
prunus_persica	Prupe.1G455300_v2.0.a1
pyrus_communis	pycom08g10240 pycom08g10250 pycom15g09350
rosa_chinensis	RchiOBHm_Chr6g0305501
rosa_laevigata	RLG00000010886
rosa_multiflora	Rmu_sc0001809.1_g000001 Rmu_sc0002810.1_g000001 Rmu_sc0004319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162750
rosa_rugosa	Rorug06G0340700.1
rosa_samantha	Rh6AG452800 Rh6BG449000 Rh6CG466500 Rh6DG453200
rosa_wichuraiana	Rw6G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	183
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	2 cut(s)	289, 344
AcoI	YGGCCR	1 cut(s)	827
AfaI	GTAC	2 cut(s)	431, 488
AfeI	AGCGCT	1 cut(s)	526
AfiI	CCNNNNNNNGG	1 cut(s)	782
AgsI	TTSAA	3 cut(s)	466, 563, 631
AjnI	CCWGG	2 cut(s)	742, 775
AluBI	AGCT	7 cut(s)	17, 52, 218, 496, 627, 803, 810
AluI	AGCT	7 cut(s)	17, 52, 218, 496, 627, 803, 810
Alw26I	GTCTC	3 cut(s)	311, 440, 820
AlwI	GGATC	2 cut(s)	289, 344
Aor51HI	AGCGCT	1 cut(s)	526
AoxI	GGCC	1 cut(s)	827
ApeKI	GCWGC	3 cut(s)	493, 624, 810
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
Asp700I	GAANNNNTTC	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	527
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	173
AxyI	CCTNAGG	1 cut(s)	246
BaeI	ACNNNNGTAYC	2 cut(s)	50, 83
BalI	TGGCCA	1 cut(s)	829
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
BbvI	GCAGC	3 cut(s)	505, 636, 797
BccI	CCATC	2 cut(s)	670, 680
BcgI	CGANNNNNNTGC	2 cut(s)	390, 424
BciT130I	CCWGG	2 cut(s)	744, 777
BciVI	GTATCC	1 cut(s)	802
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	3 cut(s)	311, 440, 820
BfaI	CTAG	3 cut(s)	86, 587, 621
BfoI	RGCGCY	1 cut(s)	528
BfuI	GTATCC	1 cut(s)	802
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	3 cut(s)	494, 625, 811
BlsI	GCNGC	3 cut(s)	495, 626, 812
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	3 cut(s)	113, 744, 777
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmrFI	CCNGG	3 cut(s)	113, 744, 777
BmsI	GCATC	2 cut(s)	175, 301
BplI	GAGNNNNNCTC	2 cut(s)	600, 632
BpuEI	CTTGAG	2 cut(s)	464, 754
BpuMI	CCSGG	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	742, 775
Bsc4I	CCNNNNNNNGG	1 cut(s)	782
Bse1I	ACTGG	2 cut(s)	227, 795
Bse21I	CCTNAGG	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	744, 777
BseDI	CCNNGG	2 cut(s)	742, 775
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	782
BseMII	CTCAG	6 cut(s)	39, 144, 237, 464, 560, 831
BseNI	ACTGG	2 cut(s)	227, 795
BseRI	GAGGAG	3 cut(s)	270, 273, 427
BseXI	GCAGC	3 cut(s)	505, 636, 797
BsgI	GTGCAG	1 cut(s)	668
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	829
BsiSI	CCGG	2 cut(s)	112, 167
BslI	CCNNNNNNNGG	1 cut(s)	782
BsmAI	GTCTC	3 cut(s)	311, 440, 820
BsmBI	CGTCTC	1 cut(s)	820
BsnI	GGCC	1 cut(s)	829
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	281, 349, 358, 439
Bsp68I	TCGCGA	1 cut(s)	183
BspACI	CCGC	1 cut(s)	708
BspANI	GGCC	1 cut(s)	829
BspCNI	CTCAG	6 cut(s)	40, 145, 238, 463, 561, 830
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	105
BspPI	GGATC	2 cut(s)	289, 344
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	227, 795
BssECI	CCNNGG	2 cut(s)	742, 775
BssMI	GATC	4 cut(s)	281, 349, 358, 439
Bst2UI	CCWGG	2 cut(s)	744, 777
Bst4CI	ACNGT	5 cut(s)	192, 486, 516, 718, 725
Bst6I	CTCTTC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	54, 708
BstDEI	CTNAG	7 cut(s)	48, 153, 246, 450, 569, 653, 817
BstF5I	GGATG	1 cut(s)	384
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	528
BstHHI	GCGC	1 cut(s)	527
BstKTI	GATC	4 cut(s)	284, 352, 361, 442
BstMAI	GTCTC	3 cut(s)	311, 440, 820
BstMBI	GATC	4 cut(s)	281, 349, 358, 439
BstNI	CCWGG	2 cut(s)	744, 777
BstSCI	CCNGG	3 cut(s)	111, 742, 775
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	505, 636, 797
BstX2I	RGATCY	2 cut(s)	281, 439
BstYI	RGATCY	2 cut(s)	281, 439
Bsu36I	CCTNAGG	1 cut(s)	246
BsuI	GTATCC	1 cut(s)	802
BsuRI	GGCC	1 cut(s)	829
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	4 cut(s)	234, 482, 730, 802
BtuMI	TCGCGA	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	54, 708
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	1 cut(s)	527
Cfr13I	GGNCC	1 cut(s)	173
CseI	GACGC	2 cut(s)	512, 802
Csp6I	GTAC	2 cut(s)	430, 487
CviAII	CATG	3 cut(s)	106, 290, 831
CviQI	GTAC	2 cut(s)	430, 487
DdeI	CTNAG	7 cut(s)	48, 153, 246, 450, 569, 653, 817
DpnI	GATC	4 cut(s)	283, 351, 360, 441
DpnII	GATC	4 cut(s)	281, 349, 358, 439
EaeI	YGGCCR	1 cut(s)	827
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	173
Eco47III	AGCGCT	1 cut(s)	526
Eco81I	CCTNAGG	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	742, 775
Esp3I	CGTCTC	1 cut(s)	820
FaeI	CATG	3 cut(s)	109, 293, 834
FaiI	YATR	5 cut(s)	32, 107, 291, 500, 832
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FatI	CATG	3 cut(s)	105, 289, 830
FauI	CCCGC	1 cut(s)	715
Fnu4HI	GCNGC	3 cut(s)	494, 625, 811
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	3 cut(s)	494, 625, 811
FspBI	CTAG	3 cut(s)	86, 587, 621
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	3 cut(s)	494, 625, 811
HaeII	RGCGCY	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	829
HapII	CCGG	2 cut(s)	112, 167
HgaI	GACGC	2 cut(s)	512, 802
HhaI	GCGC	1 cut(s)	527
Hin1II	CATG	3 cut(s)	109, 293, 834
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	6 cut(s)	208, 395, 448, 458, 573, 631
HpaI	GTTAAC	1 cut(s)	295
HpaII	CCGG	2 cut(s)	112, 167
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	3 cut(s)	295, 659, 721
Hpy188I	TCNGA	8 cut(s)	49, 154, 301, 337, 363, 556, 570, 820
Hpy188III	TCNNGA	5 cut(s)	86, 106, 182, 443, 759
Hpy8I	GTNNAC	3 cut(s)	295, 659, 721
HpyAV	CCTTC	2 cut(s)	369, 411
HpyCH4III	ACNGT	5 cut(s)	192, 486, 516, 718, 725
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	2 cut(s)	188, 685
HpyF3I	CTNAG	7 cut(s)	48, 153, 246, 450, 569, 653, 817
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	3 cut(s)	109, 293, 834
HspAI	GCGC	1 cut(s)	525
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	281, 349, 358, 439
Lsp1109I	GCAGC	3 cut(s)	505, 636, 797
LweI	GCATC	2 cut(s)	175, 301
MaeI	CTAG	3 cut(s)	86, 587, 621
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	612, 725
MalI	GATC	4 cut(s)	283, 351, 360, 441
MboI	GATC	4 cut(s)	281, 349, 358, 439
MboII	GAAGA	4 cut(s)	46, 276, 320, 605
MflI	RGATCY	2 cut(s)	281, 439
MlsI	TGGCCA	1 cut(s)	829
MluNI	TGGCCA	1 cut(s)	829
MlyI	GAGTC	2 cut(s)	442, 582
Mox20I	TGGCCA	1 cut(s)	829
MroXI	GAANNNNTTC	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	829
MseI	TTAA	2 cut(s)	131, 294
MslI	CAYNNNNRTG	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	829
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	2 cut(s)	112, 167
MspR9I	CCNGG	3 cut(s)	113, 744, 777
MvaI	CCWGG	2 cut(s)	744, 777
MvnI	CGCG	1 cut(s)	183
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	4 cut(s)	281, 349, 358, 439
NlaIII	CATG	3 cut(s)	109, 293, 834
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	2 cut(s)	612, 725
NruI	TCGCGA	1 cut(s)	183
PagI	TCATGA	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	4 cut(s)	208, 395, 458, 631
PkrI	GCNGC	3 cut(s)	495, 626, 812
PleI	GAGTC	2 cut(s)	442, 581
PpsI	GAGTC	2 cut(s)	442, 581
Psp6I	CCWGG	2 cut(s)	742, 775
PspGI	CCWGG	2 cut(s)	742, 775
PspPI	GGNCC	1 cut(s)	173
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
PsuI	RGATCY	2 cut(s)	281, 439
PvuII	CAGCTG	1 cut(s)	218
RruI	TCGCGA	1 cut(s)	183
RsaI	GTAC	2 cut(s)	431, 488
RsaNI	GTAC	2 cut(s)	430, 487
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	131, 294
SatI	GCNGC	3 cut(s)	494, 625, 811
Sau3AI	GATC	4 cut(s)	281, 349, 358, 439
Sau96I	GGNCC	1 cut(s)	173
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	2 cut(s)	442, 582
ScrFI	CCNGG	3 cut(s)	113, 744, 777
SfaNI	GCATC	2 cut(s)	175, 301
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	443, 769
SmoI	CTYRAG	2 cut(s)	443, 769
SsiI	CCGC	1 cut(s)	708
SspMI	CTAG	3 cut(s)	86, 587, 621
StyD4I	CCNGG	3 cut(s)	111, 742, 775
TaaI	ACNGT	5 cut(s)	192, 486, 516, 718, 725
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	2 cut(s)	99, 410
TatI	WGTACW	2 cut(s)	429, 486
TfiI	GAWTC	4 cut(s)	208, 395, 458, 631
Tru1I	TTAA	2 cut(s)	131, 294
Tru9I	TTAA	2 cut(s)	131, 294
TscAI	CASTG	4 cut(s)	234, 489, 730, 802
TseFI	GTSAC	2 cut(s)	612, 725
TseI	GCWGC	3 cut(s)	493, 624, 810
Tsp45I	GTSAC	2 cut(s)	612, 725
TspDTI	ATGAA	3 cut(s)	47, 122, 395
TspRI	CASTG	4 cut(s)	234, 489, 730, 802
VpaK11BI	GGWCC	1 cut(s)	173
XbaI	TCTAGA	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	43
XspI	CTAG	3 cut(s)	86, 587, 621
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.