Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009524

Physical Location & Seq

Genomic Coordinates Forward (+)

63460051 .. 63462805

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G039460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGCGGAATTCAGCTGCGGTTCACTCCCAAATGACGCCATCGATGTTCGGGTCATCGTGGCACGGTGATCACATGAAGCGAAGCCCGCCGCAGTTGGAAATCGACGAGTGGATCAACCATGGGGTCGCAGCTGATAACCAAGGCGAGTTTCGGGCGGACCGGAGTTTCGCTGAAACGGACGGCTTCTTCGGCGACCTTTGCTCCGGTGGTGACCTCAGCTTCGCTTTCAAGAACCGGGTCATCATGAATGGTTTTTCAAGCAGTGGACTGACTGAAACCCTACTAAGCCCTCAGAATCTCACCCCCAAGAATTCCAGCCTCTCAGCAACCATGGATTCCCAGTCTTCGATATGTGTTGGAACTCCCACATCGGCCGCTAACCCAATTGGTAGAGATAACCAAGCAAGAGGAGCCACCAGTGGTTCCTCTGGAGATCAATCAGATGAGGATGATTTTGAGATAGAAGCCGGTCCATGTGGAGACAGTACAAACCCTCTTGATATTAAACGTATCAGAAGGATGGTCTCGAACAGGGAGTCTGCTAGGCGATCAAGAAGAAGAAAGCAACAACATTTGCAAGAACTTGAGGGGCAGGTTGATATACTCAGAGTAGAAAATTCAACCTTATTCATGCAGCTTACAGATGCTTCTCAACAGTACCGTGATGCTGATACAAACAATAGAGTGCTGAAATCAGATGTGGAAGCTTTGAGAGCTAAGGTGAAGCTAGCTGAAGATATGGTTGCTCGCGGCTCTTTAACCTCTAGCCTTAACCAACTTCTTCAAGGTCATTTAACCACACCACAACCACTTAATCCTCATACTAATTTGCGGGGTGTAGCACATGTGTCGCCAACCATTACCATTCATGGAGAGGATACCTCATATGGTGGAATAGCAGTCTCTGGTCAGAACTCGGGCGTTGGACTCGGAAATGCTGCTGGTATAACTAATAGCAATATGAGTACCAGGATCATGAGTGATACTGTAAGCTGTGTGTCGACTGATATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

339

Amino Acids

36.64

Weight (kDa)

5.49

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	169 - 218	3.9e-13	bZIP transcription factor
bZIP_2	PF07716	170 - 216	2.1e-08	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24800
fragaria_vesca	FvH4_2g36400 FvH4_2g36400 FvH4_2g36400
malus_domestica	MD08G1123300.v1.1 MD15G1102300.v1.1
prunus_persica	Prupe.1G455300_v2.0.a1
pyrus_communis	pycom08g10240 pycom08g10250 pycom15g09350
rosa_chinensis	RchiOBHm_Chr6g0305501
rosa_laevigata	RLG00000010886
rosa_multiflora	Rmu_sc0001809.1_g000001 Rmu_sc0002810.1_g000001 Rmu_sc0004319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162750
rosa_rugosa	Rorug06G0340700.1
rosa_samantha	Rh6AG452800 Rh6BG449000 Rh6CG466500 Rh6DG453200
rosa_wichuraiana	Rw6G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	586
AccBSI	CCGCTC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	1004
AccII	CGCG	1 cut(s)	753
AciI	CCGC	8 cut(s)	7, 20, 89, 92, 158, 378, 753, 835
AclWI	GGATC	2 cut(s)	122, 983
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	3 cut(s)	10, 313, 619
AcuI	CTGAAG	1 cut(s)	756
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	3 cut(s)	490, 662, 970
AflIII	ACRYGT	1 cut(s)	847
AgsI	TTSAA	4 cut(s)	232, 261, 624, 788
AjnI	CCWGG	1 cut(s)	971
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	9 cut(s)	17, 134, 222, 640, 710, 719, 730, 734, 996
AluI	AGCT	9 cut(s)	17, 134, 222, 640, 710, 719, 730, 734, 996
Alw26I	GTCTC	3 cut(s)	477, 532, 910
AlwI	GGATC	2 cut(s)	122, 983
AlwNI	CAGNNNCTG	1 cut(s)	908
Ama87I	CYCGRG	1 cut(s)	919
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	4 cut(s)	17, 131, 637, 941
ApoI	RAATTY	3 cut(s)	10, 313, 619
ArsI	GACNNNNNNTTYG	8 cut(s)	152, 173, 184, 205, 206, 238, 524, 556
AspS9I	GGNCC	2 cut(s)	160, 473
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	4 cut(s)	80, 224, 295, 736
AsuNHI	GCTAGC	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	919
AvaII	GGWCC	2 cut(s)	160, 473
BbsI	GAAGAC	1 cut(s)	339
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	4 cut(s)	4, 143, 649, 928
BccI	CCATC	2 cut(s)	49, 517
BceAI	ACGGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	834, 868
BciT130I	CCWGG	1 cut(s)	973
BciVI	GTATCC	1 cut(s)	874
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	3 cut(s)	477, 532, 910
BfaI	CTAG	3 cut(s)	546, 731, 768
BfuAI	ACCTGC	1 cut(s)	586
BfuI	GTATCC	1 cut(s)	874
BisI	GCNGC	7 cut(s)	18, 92, 132, 378, 638, 754, 942
BlsI	GCNGC	7 cut(s)	19, 93, 133, 379, 639, 755, 943
Bme1390I	CCNGG	2 cut(s)	239, 973
Bme18I	GGWCC	2 cut(s)	160, 473
BmeT110I	CYCGRG	1 cut(s)	919
BmgT120I	GGNCC	2 cut(s)	160, 473
BmiI	GGNNCC	2 cut(s)	415, 427
BmrFI	CCNGG	2 cut(s)	239, 973
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	637, 658
BmtI	GCTAGC	1 cut(s)	734
BmuI	ACTGGG	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	869, 901
BpmI	CTGGAG	1 cut(s)	453
Bpu10I	CCTNAGC	2 cut(s)	218, 720
BpuEI	CTTGAG	1 cut(s)	608
BpuMI	CCSGG	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	532
BsaJI	CCNNGG	3 cut(s)	121, 142, 333
BsaWI	WCCGGW	2 cut(s)	162, 206
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	343, 420
BseBI	CCWGG	1 cut(s)	973
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	121, 142, 333
BseGI	GGATG	2 cut(s)	457, 528
BseMII	CTCAG	4 cut(s)	232, 308, 339, 622
BseNI	ACTGG	2 cut(s)	343, 420
BseRI	GAGGAG	1 cut(s)	426
BseX3I	CGGCCG	1 cut(s)	375
BseXI	GCAGC	4 cut(s)	4, 143, 649, 928
Bsh1236I	CGCG	1 cut(s)	753
Bsh1285I	CGRYCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	377
BshVI	ATCGAT	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	919
BsiSI	CCGG	4 cut(s)	163, 207, 238, 471
BsmAI	GTCTC	3 cut(s)	477, 532, 910
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	532
BsoBI	CYCGRG	1 cut(s)	919
Bsp143I	GATC	5 cut(s)	70, 114, 436, 551, 975
Bsp19I	CCATGG	2 cut(s)	121, 333
BspACI	CCGC	8 cut(s)	7, 20, 89, 92, 158, 378, 753, 835
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	4 cut(s)	231, 307, 338, 621
BspDI	ATCGAT	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	753
BspHI	TCATGA	2 cut(s)	246, 978
BspLI	GGNNCC	2 cut(s)	415, 427
BspMI	ACCTGC	1 cut(s)	586
BspOI	GCTAGC	1 cut(s)	734
BspPI	GGATC	2 cut(s)	122, 983
BspTNI	GGTCTC	1 cut(s)	532
BsrBI	CCGCTC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	343, 420
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	3 cut(s)	121, 142, 333
BssMI	GATC	5 cut(s)	70, 114, 436, 551, 975
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	3 cut(s)	121, 142, 333
Bst2UI	CCWGG	1 cut(s)	973
Bst4CI	ACNGT	5 cut(s)	68, 488, 660, 665, 991
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	89, 732, 751
BstDEI	CTNAG	6 cut(s)	218, 287, 294, 325, 608, 720
BstDSI	CCRYGG	2 cut(s)	121, 333
BstEII	GGTNACC	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	457, 528
BstFNI	CGCG	1 cut(s)	753
BstKTI	GATC	5 cut(s)	73, 117, 439, 554, 978
BstMAI	GTCTC	3 cut(s)	477, 532, 910
BstMBI	GATC	5 cut(s)	70, 114, 436, 551, 975
BstMCI	CGRYCG	1 cut(s)	378
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 192, 201, 413, 716
BstNI	CCWGG	1 cut(s)	973
BstNSI	RCATGY	1 cut(s)	851
BstPI	GGTNACC	1 cut(s)	212
BstSCI	CCNGG	2 cut(s)	237, 971
BstUI	CGCG	1 cut(s)	753
BstV1I	GCAGC	4 cut(s)	4, 143, 649, 928
BstV2I	GAAGAC	1 cut(s)	339
BstZI	CGGCCG	1 cut(s)	375
Bsu15I	ATCGAT	1 cut(s)	44
BsuI	GTATCC	1 cut(s)	874
BsuRI	GGCC	1 cut(s)	377
BsuTUI	ATCGAT	1 cut(s)	44
BtgI	CCRYGG	2 cut(s)	121, 333
BtsCI	GGATG	2 cut(s)	457, 528
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	271, 427
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	3 cut(s)	89, 732, 751
CaiI	CAGNNNCTG	1 cut(s)	908
CciI	TCATGA	2 cut(s)	246, 978
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	160, 473
ClaI	ATCGAT	1 cut(s)	44
CpoI	CGGWCCG	1 cut(s)	160
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	489, 661, 969
CspI	CGGWCCG	1 cut(s)	160
CviAII	CATG	9 cut(s)	76, 122, 247, 334, 477, 634, 848, 872, 979
CviQI	GTAC	3 cut(s)	489, 661, 969
DdeI	CTNAG	6 cut(s)	218, 287, 294, 325, 608, 720
DpnI	GATC	5 cut(s)	72, 116, 438, 553, 977
DpnII	GATC	5 cut(s)	70, 114, 436, 551, 975
EaeI	YGGCCR	1 cut(s)	375
EagI	CGGCCG	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	173
EclXI	CGGCCG	1 cut(s)	375
Eco130I	CCWWGG	3 cut(s)	121, 142, 333
Eco31I	GGTCTC	1 cut(s)	532
Eco47I	GGWCC	2 cut(s)	160, 473
Eco52I	CGGCCG	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	756
Eco88I	CYCGRG	1 cut(s)	919
Eco91I	GGTNACC	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	212
EcoRI	GAATTC	2 cut(s)	10, 313
EcoRII	CCWGG	1 cut(s)	971
EcoT14I	CCWWGG	3 cut(s)	121, 142, 333
ErhI	CCWWGG	3 cut(s)	121, 142, 333
FaeI	CATG	9 cut(s)	79, 125, 250, 337, 480, 637, 851, 875, 982
FatI	CATG	9 cut(s)	75, 121, 246, 333, 476, 633, 847, 871, 978
FauI	CCCGC	2 cut(s)	96, 828
FauNDI	CATATG	1 cut(s)	889
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	1004
Fnu4HI	GCNGC	7 cut(s)	18, 92, 132, 378, 638, 754, 942
FokI	GGATG	2 cut(s)	464, 535
Fsp4HI	GCNGC	7 cut(s)	18, 92, 132, 378, 638, 754, 942
FspBI	CTAG	3 cut(s)	546, 731, 768
GluI	GCNGC	7 cut(s)	18, 92, 132, 378, 638, 754, 942
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	4 cut(s)	163, 207, 238, 471
HgaI	GACGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	9 cut(s)	79, 125, 250, 337, 480, 637, 851, 875, 982
HincII	GTYRAC	1 cut(s)	1005
HindII	GTYRAC	1 cut(s)	1005
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	4 cut(s)	298, 338, 539, 930
HpaII	CCGG	4 cut(s)	163, 207, 238, 471
HphI	GGTGA	4 cut(s)	80, 224, 295, 736
Hpy166II	GTNNAC	3 cut(s)	25, 269, 1005
Hpy188I	TCNGA	7 cut(s)	297, 445, 518, 611, 700, 915, 935
Hpy188III	TCNNGA	7 cut(s)	232, 247, 432, 500, 529, 555, 979
Hpy8I	GTNNAC	3 cut(s)	25, 269, 1005
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	513
HpyCH4III	ACNGT	5 cut(s)	68, 488, 660, 665, 991
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	2 cut(s)	580, 637
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 192, 201, 413, 716
HpyF3I	CTNAG	6 cut(s)	218, 287, 294, 325, 608, 720
HpySE526I	ACGT	1 cut(s)	511
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	9 cut(s)	79, 125, 250, 337, 480, 637, 851, 875, 982
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	70, 114, 436, 551, 975
LmnI	GCTCC	3 cut(s)	4, 209, 413
Lsp1109I	GCAGC	4 cut(s)	4, 143, 649, 928
LweI	GCATC	2 cut(s)	637, 658
MaeI	CTAG	3 cut(s)	546, 731, 768
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	5 cut(s)	72, 116, 438, 553, 977
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	5 cut(s)	70, 114, 436, 551, 975
MboII	GAAGA	6 cut(s)	181, 339, 570, 573, 749, 776
MfeI	CAATTG	1 cut(s)	387
MluCI	AATT	5 cut(s)	10, 313, 387, 619, 829
MlyI	GAGTC	2 cut(s)	548, 924
MmeI	TCCRAC	3 cut(s)	78, 340, 907
MseI	TTAA	5 cut(s)	507, 761, 774, 797, 816
MspA1I	CMGCKG	2 cut(s)	17, 134
MspI	CCGG	4 cut(s)	163, 207, 238, 471
MspR9I	CCNGG	2 cut(s)	239, 973
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	973
MvnI	CGCG	1 cut(s)	753
MwoI	GCNNNNNNNGC	5 cut(s)	88, 192, 201, 413, 716
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	2 cut(s)	121, 333
NdeI	CATATG	1 cut(s)	889
NdeII	GATC	5 cut(s)	70, 114, 436, 551, 975
NheI	GCTAGC	1 cut(s)	730
NlaIII	CATG	9 cut(s)	79, 125, 250, 337, 480, 637, 851, 875, 982
NlaIV	GGNNCC	2 cut(s)	415, 427
NmuCI	GTSAC	1 cut(s)	212
NspI	RCATGY	1 cut(s)	851
PagI	TCATGA	2 cut(s)	246, 978
PciI	ACATGT	1 cut(s)	847
PfeI	GAWTC	2 cut(s)	298, 338
PkrI	GCNGC	7 cut(s)	19, 93, 133, 379, 639, 755, 943
PleI	GAGTC	2 cut(s)	547, 924
PpsI	GAGTC	2 cut(s)	547, 924
PscI	ACATGT	1 cut(s)	847
Psp6I	CCWGG	1 cut(s)	971
PspEI	GGTNACC	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	971
PspN4I	GGNNCC	2 cut(s)	415, 427
PspPI	GGNCC	2 cut(s)	160, 473
PstNI	CAGNNNCTG	1 cut(s)	908
PvuII	CAGCTG	2 cut(s)	17, 134
RsaI	GTAC	3 cut(s)	490, 662, 970
RsaNI	GTAC	3 cut(s)	489, 661, 969
Rsr2I	CGGWCCG	1 cut(s)	160
RsrII	CGGWCCG	1 cut(s)	160
SalI	GTCGAC	1 cut(s)	1003
SaqAI	TTAA	5 cut(s)	507, 761, 774, 797, 816
SatI	GCNGC	7 cut(s)	18, 92, 132, 378, 638, 754, 942
Sau3AI	GATC	5 cut(s)	70, 114, 436, 551, 975
Sau96I	GGNCC	2 cut(s)	160, 473
SchI	GAGTC	2 cut(s)	548, 924
ScrFI	CCNGG	2 cut(s)	239, 973
SfaNI	GCATC	2 cut(s)	637, 658
SinI	GGWCC	2 cut(s)	160, 473
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	5 cut(s)	10, 313, 387, 619, 829
SsiI	CCGC	8 cut(s)	7, 20, 89, 92, 158, 378, 753, 835
SspMI	CTAG	3 cut(s)	546, 731, 768
StyD4I	CCNGG	2 cut(s)	237, 971
StyI	CCWWGG	3 cut(s)	121, 142, 333
TaaI	ACNGT	5 cut(s)	68, 488, 660, 665, 991
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	5 cut(s)	44, 105, 350, 530, 1004
TasI	AATT	5 cut(s)	10, 313, 387, 619, 829
TatI	WGTACW	1 cut(s)	488
TauI	GCSGC	3 cut(s)	94, 380, 756
TfiI	GAWTC	2 cut(s)	298, 338
Tru1I	TTAA	5 cut(s)	507, 761, 774, 797, 816
Tru9I	TTAA	5 cut(s)	507, 761, 774, 797, 816
TscAI	CASTG	2 cut(s)	271, 427
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	4 cut(s)	17, 131, 637, 941
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	92, 263, 622, 860
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	271, 427
VpaK11BI	GGWCC	2 cut(s)	160, 473
XapI	RAATTY	3 cut(s)	10, 313, 619
XceI	RCATGY	1 cut(s)	851
XmiI	GTMKAC	1 cut(s)	1004
XspI	CTAG	3 cut(s)	546, 731, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.