Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001809.1

Orthogroup ID

OG0009524

Physical Location & Seq

Genomic Coordinates Forward (+)

9842 .. 11307

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001809.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgaatggtttttcaagcagtggactgactgaaaccctactaagccctcagaatctcacccccaagaattccagcctctcagcaaccatggattcccagtcttcgatatgtgttggaactcccacatcggccgctaacccaattggtagagataaccaagcaagaggagccaccagtggttcctctggagatcaatcagatgaggatgattttgagatagaagccggtccatgtggagacagtacaaaccctcttgatattaaacgtatcagaaggatggtctcgaacagggagtctgctaggcgatcaagaagaagaaagcaacaacatttgcaagaacttgaggggcaggttgatatactgagagtagaaaattcaaccttattcatgcagcttacagatgcttctcaacagtaccgtgatgctgatacaaacaatagagtgctgaaatcagatgtggaagctttgagagctaaggtgaagctagctgaagatatggttgctcgcggctctttaacctctagccttaaccaacttcttcaaggtcatttaaccacaccacaaccacttaatcctcatactaatttgcgcggtgtagcacatgtgtcgccaaccattaccattcatggagaggatacctcatatggtggaatagcagtctctggtcagaactcgggcgttggactcggaaatgctgctggtataactaatagcaatatgagtaccaggatcatgagtgatactgtaagctgtgtgtcgactgatatgtggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

257

Amino Acids

27.52

Weight (kDa)

5.74

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24800
fragaria_vesca	FvH4_2g36400 FvH4_2g36400 FvH4_2g36400
malus_domestica	MD08G1123300.v1.1 MD15G1102300.v1.1
prunus_persica	Prupe.1G455300_v2.0.a1
pyrus_communis	pycom08g10240 pycom08g10250 pycom15g09350
rosa_chinensis	RchiOBHm_Chr6g0305501
rosa_laevigata	RLG00000010886
rosa_multiflora	Rmu_sc0001809.1_g000001 Rmu_sc0002810.1_g000001 Rmu_sc0004319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162750
rosa_rugosa	Rorug06G0340700.1
rosa_samantha	Rh6AG452800 Rh6BG449000 Rh6CG466500 Rh6DG453200
rosa_wichuraiana	Rw6G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AccI	GTMKAC	1 cut(s)	758
AccII	CGCG	2 cut(s)	507, 591
AciI	CCGC	3 cut(s)	132, 507, 591
AclWI	GGATC	1 cut(s)	737
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	67, 373
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	3 cut(s)	244, 416, 724
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	3 cut(s)	15, 378, 542
AjnI	CCWGG	1 cut(s)	725
AluBI	AGCT	6 cut(s)	394, 464, 473, 484, 488, 750
AluI	AGCT	6 cut(s)	394, 464, 473, 484, 488, 750
Alw26I	GTCTC	3 cut(s)	231, 286, 664
AlwI	GGATC	1 cut(s)	737
AlwNI	CAGNNNCTG	1 cut(s)	662
Ama87I	CYCGRG	1 cut(s)	673
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	391, 695
ApoI	RAATTY	2 cut(s)	67, 373
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AspLEI	GCGC	1 cut(s)	591
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	49, 490
AsuNHI	GCTAGC	1 cut(s)	484
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	403, 682
BccI	CCATC	1 cut(s)	271
BcgI	CGANNNNNNTGC	2 cut(s)	588, 622
BciT130I	CCWGG	1 cut(s)	727
BciVI	GTATCC	1 cut(s)	628
BcoDI	GTCTC	3 cut(s)	231, 286, 664
BfaI	CTAG	3 cut(s)	300, 485, 522
BfuAI	ACCTGC	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	628
BisI	GCNGC	4 cut(s)	132, 392, 508, 696
BlsI	GCNGC	4 cut(s)	133, 393, 509, 697
Bme1390I	CCNGG	1 cut(s)	727
Bme18I	GGWCC	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	673
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	169, 181
BmrFI	CCNGG	1 cut(s)	727
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	2 cut(s)	391, 412
BmtI	GCTAGC	1 cut(s)	488
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	2 cut(s)	97, 174
BseBI	CCWGG	1 cut(s)	727
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	211, 282
BseMII	CTCAG	3 cut(s)	62, 93, 353
BseNI	ACTGG	2 cut(s)	97, 174
BseRI	GAGGAG	1 cut(s)	180
BseX3I	CGGCCG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	403, 682
Bsh1236I	CGCG	2 cut(s)	507, 591
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	673
BsiSI	CCGG	1 cut(s)	225
BsmAI	GTCTC	3 cut(s)	231, 286, 664
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	673
Bsp143I	GATC	3 cut(s)	190, 305, 729
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	3 cut(s)	132, 507, 591
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	3 cut(s)	61, 92, 354
BspFNI	CGCG	2 cut(s)	507, 591
BspHI	TCATGA	1 cut(s)	732
BspLI	GGNNCC	2 cut(s)	169, 181
BspMI	ACCTGC	1 cut(s)	340
BspOI	GCTAGC	1 cut(s)	488
BspPI	GGATC	1 cut(s)	737
BspTNI	GGTCTC	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	97, 174
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	190, 305, 729
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	727
Bst4CI	ACNGT	4 cut(s)	242, 414, 419, 745
BstC8I	GCNNGC	2 cut(s)	486, 505
BstDEI	CTNAG	5 cut(s)	41, 48, 79, 362, 474
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	211, 282
BstFNI	CGCG	2 cut(s)	507, 591
BstHHI	GCGC	1 cut(s)	591
BstKTI	GATC	3 cut(s)	193, 308, 732
BstMAI	GTCTC	3 cut(s)	231, 286, 664
BstMBI	GATC	3 cut(s)	190, 305, 729
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 470
BstNI	CCWGG	1 cut(s)	727
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	725
BstUI	CGCG	2 cut(s)	507, 591
BstV1I	GCAGC	2 cut(s)	403, 682
BstV2I	GAAGAC	1 cut(s)	93
BstZI	CGGCCG	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	211, 282
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 181
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	486, 505
CaiI	CAGNNNCTG	1 cut(s)	662
CciI	TCATGA	1 cut(s)	732
CfoI	GCGC	1 cut(s)	591
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	243, 415, 723
CviAII	CATG	6 cut(s)	88, 231, 388, 602, 626, 733
CviQI	GTAC	3 cut(s)	243, 415, 723
DdeI	CTNAG	5 cut(s)	41, 48, 79, 362, 474
DpnI	GATC	3 cut(s)	192, 307, 731
DpnII	GATC	3 cut(s)	190, 305, 729
EaeI	YGGCCR	1 cut(s)	129
EagI	CGGCCG	1 cut(s)	129
EclXI	CGGCCG	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	227
Eco52I	CGGCCG	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	673
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	6 cut(s)	91, 234, 391, 605, 629, 736
FatI	CATG	6 cut(s)	87, 230, 387, 601, 625, 732
FauNDI	CATATG	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	758
Fnu4HI	GCNGC	4 cut(s)	132, 392, 508, 696
FokI	GGATG	2 cut(s)	218, 289
Fsp4HI	GCNGC	4 cut(s)	132, 392, 508, 696
FspBI	CTAG	3 cut(s)	300, 485, 522
GlaI	GCGC	1 cut(s)	590
GluI	GCNGC	4 cut(s)	132, 392, 508, 696
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	1 cut(s)	225
HhaI	GCGC	1 cut(s)	591
Hin1II	CATG	6 cut(s)	91, 234, 391, 605, 629, 736
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HindIII	AAGCTT	1 cut(s)	462
HinfI	GANTC	4 cut(s)	52, 92, 293, 684
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	2 cut(s)	49, 490
Hpy166II	GTNNAC	2 cut(s)	23, 759
Hpy188I	TCNGA	6 cut(s)	51, 199, 272, 454, 669, 689
Hpy188III	TCNNGA	5 cut(s)	186, 254, 283, 309, 733
Hpy8I	GTNNAC	2 cut(s)	23, 759
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	4 cut(s)	242, 414, 419, 745
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	334, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 470
HpyF3I	CTNAG	5 cut(s)	41, 48, 79, 362, 474
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	6 cut(s)	91, 234, 391, 605, 629, 736
HspAI	GCGC	1 cut(s)	589
Kzo9I	GATC	3 cut(s)	190, 305, 729
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	2 cut(s)	403, 682
LweI	GCATC	2 cut(s)	391, 412
MaeI	CTAG	3 cut(s)	300, 485, 522
MaeII	ACGT	1 cut(s)	265
MalI	GATC	3 cut(s)	192, 307, 731
MboI	GATC	3 cut(s)	190, 305, 729
MboII	GAAGA	5 cut(s)	93, 324, 327, 503, 530
MfeI	CAATTG	1 cut(s)	141
MluCI	AATT	4 cut(s)	67, 141, 373, 583
MlyI	GAGTC	2 cut(s)	302, 678
MmeI	TCCRAC	2 cut(s)	94, 661
MseI	TTAA	5 cut(s)	261, 515, 528, 551, 570
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	727
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	727
MvnI	CGCG	2 cut(s)	507, 591
MwoI	GCNNNNNNNGC	2 cut(s)	167, 470
NcoI	CCATGG	1 cut(s)	87
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	3 cut(s)	190, 305, 729
NheI	GCTAGC	1 cut(s)	484
NlaIII	CATG	6 cut(s)	91, 234, 391, 605, 629, 736
NlaIV	GGNNCC	2 cut(s)	169, 181
NspI	RCATGY	1 cut(s)	605
PagI	TCATGA	1 cut(s)	732
PciI	ACATGT	1 cut(s)	601
PfeI	GAWTC	2 cut(s)	52, 92
PkrI	GCNGC	4 cut(s)	133, 393, 509, 697
PleI	GAGTC	2 cut(s)	301, 678
PpsI	GAGTC	2 cut(s)	301, 678
PscI	ACATGT	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	725
PspN4I	GGNNCC	2 cut(s)	169, 181
PspPI	GGNCC	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	662
RsaI	GTAC	3 cut(s)	244, 416, 724
RsaNI	GTAC	3 cut(s)	243, 415, 723
SalI	GTCGAC	1 cut(s)	757
SaqAI	TTAA	5 cut(s)	261, 515, 528, 551, 570
SatI	GCNGC	4 cut(s)	132, 392, 508, 696
Sau3AI	GATC	3 cut(s)	190, 305, 729
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	2 cut(s)	302, 678
ScrFI	CCNGG	1 cut(s)	727
SfaNI	GCATC	2 cut(s)	391, 412
SinI	GGWCC	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	4 cut(s)	67, 141, 373, 583
SsiI	CCGC	3 cut(s)	132, 507, 591
SspMI	CTAG	3 cut(s)	300, 485, 522
StyD4I	CCNGG	1 cut(s)	725
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	4 cut(s)	242, 414, 419, 745
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	3 cut(s)	104, 284, 758
TasI	AATT	4 cut(s)	67, 141, 373, 583
TatI	WGTACW	1 cut(s)	242
TauI	GCSGC	2 cut(s)	134, 510
TfiI	GAWTC	2 cut(s)	52, 92
Tru1I	TTAA	5 cut(s)	261, 515, 528, 551, 570
Tru9I	TTAA	5 cut(s)	261, 515, 528, 551, 570
TscAI	CASTG	2 cut(s)	25, 181
TseI	GCWGC	2 cut(s)	391, 695
TspDTI	ATGAA	3 cut(s)	17, 376, 614
TspRI	CASTG	2 cut(s)	25, 181
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	2 cut(s)	67, 373
XceI	RCATGY	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	758
XspI	CTAG	3 cut(s)	300, 485, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.