Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009524

Physical Location & Seq

Genomic Coordinates Reverse (-)

8586050 .. 8586387

Gene Structure 338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g10250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGATTCCCAGTCATCGATTTGTGTTGGCAATCCAATATCGGCTGCTAAACCGATTGGCAGAGATAAGCAAGCAAGAGGAGCCTACAGTGGTTCCCGAGAACAATCGGACGAGGATGATTTCGAGATAGAAGTTGGTCCGCGTGGAGACAGTACAGACTCCCTCGATATCAAACGCTTTAGAAGGTATCCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

66

Amino Acids

7.18

Weight (kDa)

4.92

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24800
fragaria_vesca	FvH4_2g36400 FvH4_2g36400 FvH4_2g36400
malus_domestica	MD08G1123300.v1.1 MD15G1102300.v1.1
prunus_persica	Prupe.1G455300_v2.0.a1
pyrus_communis	pycom08g10240 pycom08g10250 pycom15g09350
rosa_chinensis	RchiOBHm_Chr6g0305501
rosa_laevigata	RLG00000010886
rosa_multiflora	Rmu_sc0001809.1_g000001 Rmu_sc0002810.1_g000001 Rmu_sc0004319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162750
rosa_rugosa	Rorug06G0340700.1
rosa_samantha	Rh6AG452800 Rh6BG449000 Rh6CG466500 Rh6DG453200
rosa_wichuraiana	Rw6G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	142
AciI	CCGC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	82, 94
BmrI	ACTGGG	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	4
Bsa29I	ATCGAT	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	10
BseCI	ATCGAT	1 cut(s)	17
BseGI	GGATG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	96
BspACI	CCGC	1 cut(s)	140
BspDI	ATCGAT	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	82, 94
BsrI	ACTGG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	89, 152
BstC8I	GCNNGC	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	121
BstFNI	CGCG	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	85
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	17
BsuI	GTATCC	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	153
CviJI	RGCY	2 cut(s)	44, 83
CviKI_1	RGCY	2 cut(s)	44, 83
CviQI	GTAC	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	96
EcoRV	GATATC	1 cut(s)	169
FaiI	YATR	2 cut(s)	194, 196
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	5, 158
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	96, 124
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	2 cut(s)	89, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	1 cut(s)	23
Lsp1109I	GCAGC	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	3 cut(s)	71, 106, 173
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	80
NlaIV	GGNNCC	2 cut(s)	82, 94
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	82, 94
PspPI	GGNCC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SatI	GCNGC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	152
SetI	ASST	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	137
SsiI	CCGC	1 cut(s)	140
TaaI	ACNGT	2 cut(s)	89, 152
TaqI	TCGA	3 cut(s)	17, 123, 165
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	1 cut(s)	44
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.