Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009524

Physical Location & Seq

Genomic Coordinates Reverse (-)

5064187 .. 5066607

Gene Structure 2421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010886

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGCGGAATTCAGCTGCCGTTCAATCCCAAATGACGCCGTCGATGTTCGGGTCATCGTGGCATGGTGATCACATGAAGCGAAGCCCGCCGCAGTTGGAAATCGACGAGTGGATCAACCATGGGGTCGCAGCTGATAACAACGGCGAGTTTCGGGCGGACCGGAGTTTCGCCGAAACGGACGGCTTTTTCGGCGACGTTTGCGCCGGTGACCTCAGCTTCGCTTTCAAGAACCGGGACATGATGAATGGTTTTTCAAGCAGTGGACTGACTGAAACCCTACTAAGCCCTCAGAATCCAACCCCCAAGAATTCCAGCCTCTCAGCAACCATGGATTCCCAGTCTTCGATATGTGTTGGAACTCCCACATCGGCCGCTGACCCAATTGGTAGAGATAACCAAGCAAGAGGAGCCACCAGTGGTTCCTCTGGAGATCAATCAGATGAGGATGATTTTGAGATAGAAGCCGGTCCACATGGAGACAGTACAGACCCTTCTGATATTAAACGTATCAGAAGGATGGTCTCGAACAGGGAGTCTGCTAGGCGATCAAGAAGAAGAAAGCAACAACATTTGCAAGAACTTGAGGGGCAGGTTGATATACTGAGAGTAGAAAATTCAACCTTATTCATGCAGCTTACAGATGCTTCTCAACAGTACCGTGATGCTGATACAAACAATAGAGTGCTGAAATCAGATGTGGAAGCTTTGAGAGCTAAGGTGAAGCTAGCTGAAGATATGGTTGGTCGCGTCTCTTTAACCTCTAGCTTTAACCAACTTCTTCAAGGTCATTTAACCACACCACAACCACTTAATCCTCATACTAATTTGCGCGGTGTAGCACATGTGTCGCCAACCATTACCATTCATGGAGAGGATACCTCATATGGTGGAATAGCAGTCTCTGATCAGAACTCGGGCGTTGGACTCGGAAATGCTGCTGGTATGACTAATAGCAATACTGTAAGCTGTGTGTCGACTGATATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

331

Amino Acids

35.77

Weight (kDa)

5.11

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	167 - 215	1.5e-08	Basic region leucine zipper
bZIP_1	PF00170	168 - 217	1.2e-13	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24800
fragaria_vesca	FvH4_2g36400 FvH4_2g36400 FvH4_2g36400
malus_domestica	MD08G1123300.v1.1 MD15G1102300.v1.1
prunus_persica	Prupe.1G455300_v2.0.a1
pyrus_communis	pycom08g10240 pycom08g10250 pycom15g09350
rosa_chinensis	RchiOBHm_Chr6g0305501
rosa_laevigata	RLG00000010886
rosa_multiflora	Rmu_sc0001809.1_g000001 Rmu_sc0002810.1_g000001 Rmu_sc0004319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162750
rosa_rugosa	Rorug06G0340700.1
rosa_samantha	Rh6AG452800 Rh6BG449000 Rh6CG466500 Rh6DG453200
rosa_wichuraiana	Rw6G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	583
AccBSI	CCGCTC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	977
AccII	CGCG	2 cut(s)	750, 834
AciI	CCGC	6 cut(s)	7, 89, 92, 158, 375, 834
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	3 cut(s)	10, 310, 616
AcuI	CTGAAG	1 cut(s)	753
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	487, 659
AflIII	ACRYGT	1 cut(s)	844
AgsI	TTSAA	5 cut(s)	26, 229, 258, 621, 785
AjuI	GAANNNNNNNTTGG	2 cut(s)	726, 758
Alw26I	GTCTC	4 cut(s)	474, 529, 757, 907
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	905
Ama87I	CYCGRG	1 cut(s)	916
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	4 cut(s)	17, 131, 634, 938
ApoI	RAATTY	3 cut(s)	10, 310, 616
ArsI	GACNNNNNNTTYG	8 cut(s)	152, 173, 184, 203, 205, 235, 521, 553
AspLEI	GCGC	2 cut(s)	206, 834
AspS9I	GGNCC	2 cut(s)	160, 470
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	3 cut(s)	80, 221, 733
AsuNHI	GCTAGC	1 cut(s)	727
AvaI	CYCGRG	1 cut(s)	916
AvaII	GGWCC	2 cut(s)	160, 470
BarI	GAAGNNNNNNTAC	2 cut(s)	478, 510
BbsI	GAAGAC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	215
BbvI	GCAGC	4 cut(s)	4, 143, 646, 925
BccI	CCATC	1 cut(s)	514
BceAI	ACGGC	4 cut(s)	5, 25, 160, 199
BcgI	CGANNNNNNTGC	2 cut(s)	831, 865
BciVI	GTATCC	1 cut(s)	871
BclI	TGATCA	2 cut(s)	70, 907
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	4 cut(s)	474, 529, 757, 907
BfaI	CTAG	3 cut(s)	543, 728, 765
BfuAI	ACCTGC	1 cut(s)	583
BfuI	GTATCC	1 cut(s)	871
BisI	GCNGC	6 cut(s)	18, 92, 132, 375, 635, 939
BlsI	GCNGC	6 cut(s)	19, 93, 133, 376, 636, 940
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	2 cut(s)	160, 470
BmeT110I	CYCGRG	1 cut(s)	916
BmgT120I	GGNCC	2 cut(s)	160, 470
BmiI	GGNNCC	2 cut(s)	412, 424
BmrFI	CCNGG	1 cut(s)	236
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	2 cut(s)	634, 655
BmtI	GCTAGC	1 cut(s)	731
BmuI	ACTGGG	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	866, 898
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	2 cut(s)	215, 717
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	2 cut(s)	121, 330
BsaWI	WCCGGW	1 cut(s)	162
Bse118I	RCCGGY	2 cut(s)	206, 467
Bse1I	ACTGG	2 cut(s)	340, 417
BseDI	CCNNGG	2 cut(s)	121, 330
BseGI	GGATG	2 cut(s)	454, 525
BseMII	CTCAG	4 cut(s)	229, 305, 336, 596
BseNI	ACTGG	2 cut(s)	340, 417
BseRI	GAGGAG	1 cut(s)	423
BseX3I	CGGCCG	1 cut(s)	372
BseXI	GCAGC	4 cut(s)	4, 143, 646, 925
Bsh1236I	CGCG	2 cut(s)	750, 834
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	916
BsiSI	CCGG	4 cut(s)	163, 207, 235, 468
BslFI	GGGAC	1 cut(s)	251
BsmAI	GTCTC	4 cut(s)	474, 529, 757, 907
BsmBI	CGTCTC	1 cut(s)	757
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	374
Bso31I	GGTCTC	1 cut(s)	529
BsoBI	CYCGRG	1 cut(s)	916
Bsp143I	GATC	5 cut(s)	70, 114, 433, 548, 907
Bsp19I	CCATGG	2 cut(s)	121, 330
BspACI	CCGC	6 cut(s)	7, 89, 92, 158, 375, 834
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	4 cut(s)	228, 304, 335, 597
BspFNI	CGCG	2 cut(s)	750, 834
BspLI	GGNNCC	2 cut(s)	412, 424
BspMI	ACCTGC	1 cut(s)	583
BspOI	GCTAGC	1 cut(s)	731
BspPI	GGATC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	529
BsrBI	CCGCTC	1 cut(s)	7
BsrFI	RCCGGY	2 cut(s)	206, 467
BsrI	ACTGG	2 cut(s)	340, 417
BssAI	RCCGGY	2 cut(s)	206, 467
BssECI	CCNNGG	2 cut(s)	121, 330
BssMI	GATC	5 cut(s)	70, 114, 433, 548, 907
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	2 cut(s)	121, 330
Bst4CI	ACNGT	4 cut(s)	485, 657, 662, 964
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	89, 729
BstDEI	CTNAG	6 cut(s)	215, 284, 291, 322, 605, 717
BstDSI	CCRYGG	2 cut(s)	121, 330
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	454, 525
BstFNI	CGCG	2 cut(s)	750, 834
BstHHI	GCGC	2 cut(s)	206, 834
BstKTI	GATC	5 cut(s)	73, 117, 436, 551, 910
BstMAI	GTCTC	4 cut(s)	474, 529, 757, 907
BstMBI	GATC	5 cut(s)	70, 114, 433, 548, 907
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 192, 201, 410, 713
BstNSI	RCATGY	1 cut(s)	848
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	234
BstUI	CGCG	2 cut(s)	750, 834
BstV1I	GCAGC	4 cut(s)	4, 143, 646, 925
BstV2I	GAAGAC	1 cut(s)	336
BstZI	CGGCCG	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	871
BsuRI	GGCC	1 cut(s)	374
BtgI	CCRYGG	2 cut(s)	121, 330
BtsCI	GGATG	2 cut(s)	454, 525
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	268, 424
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	2 cut(s)	89, 729
CaiI	CAGNNNCTG	1 cut(s)	905
CfoI	GCGC	2 cut(s)	206, 834
Cfr10I	RCCGGY	2 cut(s)	206, 467
Cfr13I	GGNCC	2 cut(s)	160, 470
CpoI	CGGWCCG	1 cut(s)	160
CseI	GACGC	2 cut(s)	46, 739
Csp6I	GTAC	2 cut(s)	486, 658
CspI	CGGWCCG	1 cut(s)	160
CviAII	CATG	9 cut(s)	65, 76, 122, 241, 331, 476, 631, 845, 869
CviQI	GTAC	2 cut(s)	486, 658
DdeI	CTNAG	6 cut(s)	215, 284, 291, 322, 605, 717
DpnI	GATC	5 cut(s)	72, 116, 435, 550, 909
DpnII	GATC	5 cut(s)	70, 114, 433, 548, 907
EaeI	YGGCCR	1 cut(s)	372
EagI	CGGCCG	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	173
EclXI	CGGCCG	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	121, 330
Eco31I	GGTCTC	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	160, 470
Eco52I	CGGCCG	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	753
Eco88I	CYCGRG	1 cut(s)	916
Eco91I	GGTNACC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	209
EcoRI	GAATTC	2 cut(s)	10, 310
EcoT14I	CCWWGG	2 cut(s)	121, 330
ErhI	CCWWGG	2 cut(s)	121, 330
Esp3I	CGTCTC	1 cut(s)	757
FaeI	CATG	9 cut(s)	68, 79, 125, 244, 334, 479, 634, 848, 872
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	9 cut(s)	64, 75, 121, 240, 330, 475, 630, 844, 868
FauI	CCCGC	1 cut(s)	96
FauNDI	CATATG	1 cut(s)	886
FbaI	TGATCA	2 cut(s)	70, 907
FblI	GTMKAC	1 cut(s)	977
Fnu4HI	GCNGC	6 cut(s)	18, 92, 132, 375, 635, 939
FokI	GGATG	2 cut(s)	461, 532
Fsp4HI	GCNGC	6 cut(s)	18, 92, 132, 375, 635, 939
FspBI	CTAG	3 cut(s)	543, 728, 765
GlaI	GCGC	2 cut(s)	205, 833
GluI	GCNGC	6 cut(s)	18, 92, 132, 375, 635, 939
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	4 cut(s)	163, 207, 235, 468
HgaI	GACGC	2 cut(s)	46, 739
HhaI	GCGC	2 cut(s)	206, 834
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	9 cut(s)	68, 79, 125, 244, 334, 479, 634, 848, 872
Hin6I	GCGC	2 cut(s)	204, 832
HinP1I	GCGC	2 cut(s)	204, 832
HincII	GTYRAC	1 cut(s)	978
HindII	GTYRAC	1 cut(s)	978
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	4 cut(s)	295, 335, 536, 927
HpaII	CCGG	4 cut(s)	163, 207, 235, 468
HphI	GGTGA	3 cut(s)	80, 221, 733
Hpy166II	GTNNAC	3 cut(s)	266, 473, 978
Hpy188I	TCNGA	8 cut(s)	294, 442, 499, 515, 697, 907, 912, 932
Hpy188III	TCNNGA	4 cut(s)	229, 429, 526, 552
Hpy8I	GTNNAC	3 cut(s)	266, 473, 978
Hpy99I	CGWCG	3 cut(s)	46, 110, 200
HpyAV	CCTTC	2 cut(s)	504, 510
HpyCH4III	ACNGT	4 cut(s)	485, 657, 662, 964
HpyCH4IV	ACGT	2 cut(s)	198, 508
HpyCH4V	TGCA	2 cut(s)	577, 634
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 192, 201, 410, 713
HpyF3I	CTNAG	6 cut(s)	215, 284, 291, 322, 605, 717
HpySE526I	ACGT	2 cut(s)	198, 508
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	9 cut(s)	68, 79, 125, 244, 334, 479, 634, 848, 872
HspAI	GCGC	2 cut(s)	204, 832
Ksp22I	TGATCA	2 cut(s)	70, 907
Kzo9I	GATC	5 cut(s)	70, 114, 433, 548, 907
LmnI	GCTCC	2 cut(s)	4, 410
Lsp1109I	GCAGC	4 cut(s)	4, 143, 646, 925
LweI	GCATC	2 cut(s)	634, 655
MaeI	CTAG	3 cut(s)	543, 728, 765
MaeII	ACGT	2 cut(s)	198, 508
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	5 cut(s)	72, 116, 435, 550, 909
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	5 cut(s)	70, 114, 433, 548, 907
MboII	GAAGA	5 cut(s)	336, 567, 570, 746, 773
MfeI	CAATTG	1 cut(s)	384
MluCI	AATT	5 cut(s)	10, 310, 384, 616, 826
MlyI	GAGTC	2 cut(s)	545, 921
MmeI	TCCRAC	4 cut(s)	78, 323, 337, 904
MseI	TTAA	5 cut(s)	504, 758, 771, 794, 813
MspA1I	CMGCKG	3 cut(s)	17, 134, 377
MspI	CCGG	4 cut(s)	163, 207, 235, 468
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	384
MvnI	CGCG	2 cut(s)	750, 834
MwoI	GCNNNNNNNGC	5 cut(s)	88, 192, 201, 410, 713
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	2 cut(s)	121, 330
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	5 cut(s)	70, 114, 433, 548, 907
NheI	GCTAGC	1 cut(s)	727
NlaIII	CATG	9 cut(s)	68, 79, 125, 244, 334, 479, 634, 848, 872
NlaIV	GGNNCC	2 cut(s)	412, 424
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	848
PciI	ACATGT	1 cut(s)	844
PfeI	GAWTC	2 cut(s)	295, 335
PflFI	GACNNNGTC	1 cut(s)	40
PkrI	GCNGC	6 cut(s)	19, 93, 133, 376, 636, 940
PleI	GAGTC	2 cut(s)	544, 921
PpsI	GAGTC	2 cut(s)	544, 921
PscI	ACATGT	1 cut(s)	844
PspEI	GGTNACC	1 cut(s)	209
PspN4I	GGNNCC	2 cut(s)	412, 424
PspPI	GGNCC	2 cut(s)	160, 470
PstNI	CAGNNNCTG	1 cut(s)	905
PsyI	GACNNNGTC	1 cut(s)	40
PvuII	CAGCTG	2 cut(s)	17, 134
RsaI	GTAC	2 cut(s)	487, 659
RsaNI	GTAC	2 cut(s)	486, 658
Rsr2I	CGGWCCG	1 cut(s)	160
RsrII	CGGWCCG	1 cut(s)	160
SalI	GTCGAC	1 cut(s)	976
SaqAI	TTAA	5 cut(s)	504, 758, 771, 794, 813
SatI	GCNGC	6 cut(s)	18, 92, 132, 375, 635, 939
Sau3AI	GATC	5 cut(s)	70, 114, 433, 548, 907
Sau96I	GGNCC	2 cut(s)	160, 470
SchI	GAGTC	2 cut(s)	545, 921
ScrFI	CCNGG	1 cut(s)	236
SfaNI	GCATC	2 cut(s)	634, 655
SgrAI	CRCCGGYG	1 cut(s)	206
SinI	GGWCC	2 cut(s)	160, 470
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	5 cut(s)	10, 310, 384, 616, 826
SsiI	CCGC	6 cut(s)	7, 89, 92, 158, 375, 834
SspMI	CTAG	3 cut(s)	543, 728, 765
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	121, 330
TaaI	ACNGT	4 cut(s)	485, 657, 662, 964
TaiI	ACGT	2 cut(s)	201, 511
TaqI	TCGA	5 cut(s)	44, 105, 347, 527, 977
TasI	AATT	5 cut(s)	10, 310, 384, 616, 826
TatI	WGTACW	1 cut(s)	485
TauI	GCSGC	2 cut(s)	94, 377
TfiI	GAWTC	2 cut(s)	295, 335
Tru1I	TTAA	5 cut(s)	504, 758, 771, 794, 813
Tru9I	TTAA	5 cut(s)	504, 758, 771, 794, 813
TscAI	CASTG	2 cut(s)	268, 424
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	4 cut(s)	17, 131, 634, 938
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	4 cut(s)	92, 260, 619, 857
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	268, 424
Tth111I	GACNNNGTC	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	160, 470
XapI	RAATTY	3 cut(s)	10, 310, 616
XceI	RCATGY	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	977
XspI	CTAG	3 cut(s)	543, 728, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.