RchiOBHm_Chr6g0305501
BZIP Family

Basic leucine zipper

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
64477670 .. 64480387
2718 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27455

Sequence Viewer

Length: 1017 bp
ATGGAGCGGAATTCAGCTGCGGTTCACTCCCAAATGACGCCGTCGATGTTCGGGTCGTCGTGGCACGGTGATCACATGAAGCGAAGCCCGCCGCAGTTGGAAATCGACGAGTGGATCAACCATGGGGTCGCAGCTGATAACCAAGGCGAGTTTCGGGCGGACCGGAGTTTCGCCGAAACGGACGGCTTTTTCGGCGACGTTTGCTCCGGTGACCTCAGCTTCGCTTTCAAGAACCGGGACATGATGAATGGCTTTTCAAGCAGTGGACTGACTGAAACCCTACTAAGCCCTCAGAAACTCACCCCCAAGAATTCCAGCCTCTCAGCAACCATGGATTCCCAGTCTTCGATATGTGTTGGAACTCCCACATCGGCCGCTAACCCAATTGGTAGAGATAACCAAGCAAGAGGAGCCACCAGTGGTTCCTCTGGAGATCAATCAGATGAGGATGATTTTGAGATAGAAGCCGGCCCATGTGGAGACAGTACAAACCCTCTTGATATTAAACGTATCAGAAGGATGGTCTCGAACAGGGAGTCTGCTAGGCGATCAAGAAGAAGAAAGCAACAACATTTGCAAGAACTTGAGGGGCAGGTTGATATACTGAGAGGAGAAAATTCAACCTTATTCATGCAGCTTACAGATGCTTCTCAACAGTACCGTGATGCTGATACAAACAATAGAGTGCTGAAATCAGATGTGGAAGCTTTGAGAGCTAAGGTGAAGCTAGCTGAAGATATGGTTACTCGCGGCTCTTTAACCTCTAGCCTTAACCAACTTCTTCAAGGTCATTTAACCACACCACAACCACTTAATCCTCATACTAATTTGCGCGGTGTAGCACACGTGTCGCCAACCATTACCATTCATGGAGAGGATACCTCATATGGTGGAATAGCAATCTCTGGTCAGAACTCGGGCGTTGGACTCGGAAATGTTGCTGGTATGACTAATAGCAATATGAGTACCAGGATCATGAGTGATTCTGTAAGCTGTGTGTCGACTGATATGTGGTAA

Protein Analysis

338

Amino Acids

36.65

Weight (kDa)

5.49

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 168 - 217 3.5e-14 bZIP transcription factor
bZIP_2 PF07716 169 - 215 8.2e-09 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AccBSI CCGCTC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 1001
AccII CGCG 2 cut(s) 750, 834
AciI CCGC 8 cut(s) 7, 20, 89, 92, 158, 375, 750, 834
AclWI GGATC 2 cut(s) 122, 980
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 3 cut(s) 10, 310, 616
AcuI CTGAAG 1 cut(s) 753
AcvI CACGTG 1 cut(s) 847
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 3 cut(s) 487, 659, 967
AflIII ACRYGT 2 cut(s) 844, 846
AgsI TTSAA 4 cut(s) 229, 258, 621, 785
AjnI CCWGG 1 cut(s) 968
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 9 cut(s) 17, 134, 219, 637, 707, 716, 727, 731, 993
AluI AGCT 9 cut(s) 17, 134, 219, 637, 707, 716, 727, 731, 993
Alw26I GTCTC 2 cut(s) 474, 529
AlwI GGATC 2 cut(s) 122, 980
Ama87I CYCGRG 1 cut(s) 916
AoxI GGCC 2 cut(s) 372, 469
ApeKI GCWGC 3 cut(s) 17, 131, 634
ApoI RAATTY 3 cut(s) 10, 310, 616
ArsI GACNNNNNNTTYG 8 cut(s) 152, 173, 184, 203, 205, 235, 521, 553
AspLEI GCGC 1 cut(s) 834
AspS9I GGNCC 2 cut(s) 160, 470
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 4 cut(s) 80, 221, 292, 733
AsuNHI GCTAGC 1 cut(s) 727
AvaI CYCGRG 1 cut(s) 916
AvaII GGWCC 1 cut(s) 160
BbrPI CACGTG 1 cut(s) 847
BbsI GAAGAC 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 215
BbvI GCAGC 3 cut(s) 4, 143, 646
BccI CCATC 1 cut(s) 514
BceAI ACGGC 2 cut(s) 25, 199
BcgI CGANNNNNNTGC 2 cut(s) 831, 865
BciT130I CCWGG 1 cut(s) 970
BciVI GTATCC 1 cut(s) 871
BclI TGATCA 1 cut(s) 70
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 474, 529
BfaI CTAG 3 cut(s) 543, 728, 765
BfuAI ACCTGC 1 cut(s) 583
BfuI GTATCC 1 cut(s) 871
BisI GCNGC 6 cut(s) 18, 92, 132, 375, 635, 751
BlsI GCNGC 6 cut(s) 19, 93, 133, 376, 636, 752
Bme1390I CCNGG 2 cut(s) 236, 970
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 916
BmgT120I GGNCC 2 cut(s) 160, 470
BmiI GGNNCC 2 cut(s) 412, 424
BmrFI CCNGG 2 cut(s) 236, 970
BmrI ACTGGG 1 cut(s) 334
BmsI GCATC 2 cut(s) 634, 655
BmtI GCTAGC 1 cut(s) 731
BmuI ACTGGG 1 cut(s) 334
BpiI GAAGAC 1 cut(s) 336
BplI GAGNNNNNCTC 2 cut(s) 866, 898
BpmI CTGGAG 1 cut(s) 450
Bpu10I CCTNAGC 2 cut(s) 215, 717
BpuEI CTTGAG 1 cut(s) 605
BpuMI CCSGG 1 cut(s) 236
BsaAI YACGTR 1 cut(s) 847
BsaHI GRCGYC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 529
BsaJI CCNNGG 3 cut(s) 121, 142, 330
BsaWI WCCGGW 2 cut(s) 162, 206
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 2 cut(s) 340, 417
BseBI CCWGG 1 cut(s) 970
BseDI CCNNGG 3 cut(s) 121, 142, 330
BseGI GGATG 2 cut(s) 454, 525
BseMII CTCAG 4 cut(s) 229, 305, 336, 596
BseNI ACTGG 2 cut(s) 340, 417
BseRI GAGGAG 2 cut(s) 423, 624
BseX3I CGGCCG 1 cut(s) 372
BseXI GCAGC 3 cut(s) 4, 143, 646
Bsh1236I CGCG 2 cut(s) 750, 834
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 2 cut(s) 374, 471
BsiEI CGRYCG 1 cut(s) 375
BsiHKCI CYCGRG 1 cut(s) 916
BsiSI CCGG 4 cut(s) 163, 207, 235, 468
BslFI GGGAC 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 474, 529
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 2 cut(s) 374, 471
Bso31I GGTCTC 1 cut(s) 529
BsoBI CYCGRG 1 cut(s) 916
Bsp143I GATC 5 cut(s) 70, 114, 433, 548, 972
Bsp19I CCATGG 2 cut(s) 121, 330
BspACI CCGC 8 cut(s) 7, 20, 89, 92, 158, 375, 750, 834
BspANI GGCC 2 cut(s) 374, 471
BspCNI CTCAG 4 cut(s) 228, 304, 335, 597
BspFNI CGCG 2 cut(s) 750, 834
BspHI TCATGA 1 cut(s) 975
BspLI GGNNCC 2 cut(s) 412, 424
BspMI ACCTGC 1 cut(s) 583
BspOI GCTAGC 1 cut(s) 731
BspPI GGATC 2 cut(s) 122, 980
BspTNI GGTCTC 1 cut(s) 529
BsrBI CCGCTC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 2 cut(s) 340, 417
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 3 cut(s) 121, 142, 330
BssMI GATC 5 cut(s) 70, 114, 433, 548, 972
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 3 cut(s) 121, 142, 330
Bst2UI CCWGG 1 cut(s) 970
Bst4CI ACNGT 4 cut(s) 68, 485, 657, 662
BstACI GRCGYC 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 847
BstC8I GCNNGC 3 cut(s) 89, 469, 729
BstDEI CTNAG 6 cut(s) 215, 284, 291, 322, 605, 717
BstDSI CCRYGG 2 cut(s) 121, 330
BstEII GGTNACC 1 cut(s) 209
BstF5I GGATG 2 cut(s) 454, 525
BstFNI CGCG 2 cut(s) 750, 834
BstHHI GCGC 1 cut(s) 834
BstKTI GATC 5 cut(s) 73, 117, 436, 551, 975
BstMAI GTCTC 2 cut(s) 474, 529
BstMBI GATC 5 cut(s) 70, 114, 433, 548, 972
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 6 cut(s) 88, 192, 201, 258, 410, 713
BstNI CCWGG 1 cut(s) 970
BstPI GGTNACC 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 234, 968
BstUI CGCG 2 cut(s) 750, 834
BstV1I GCAGC 3 cut(s) 4, 143, 646
BstV2I GAAGAC 1 cut(s) 336
BstZI CGGCCG 1 cut(s) 372
BsuI GTATCC 1 cut(s) 871
BsuRI GGCC 2 cut(s) 374, 471
BtgI CCRYGG 2 cut(s) 121, 330
BtsCI GGATG 2 cut(s) 454, 525
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 268, 424
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 3 cut(s) 89, 469, 729
CciI TCATGA 1 cut(s) 975
CfoI GCGC 1 cut(s) 834
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 2 cut(s) 160, 470
CpoI CGGWCCG 1 cut(s) 160
CseI GACGC 1 cut(s) 46
Csp6I GTAC 3 cut(s) 486, 658, 966
CspI CGGWCCG 1 cut(s) 160
CviAII CATG 8 cut(s) 76, 122, 241, 331, 474, 631, 869, 976
CviQI GTAC 3 cut(s) 486, 658, 966
DdeI CTNAG 6 cut(s) 215, 284, 291, 322, 605, 717
DpnI GATC 5 cut(s) 72, 116, 435, 550, 974
DpnII GATC 5 cut(s) 70, 114, 433, 548, 972
EaeI YGGCCR 1 cut(s) 372
EagI CGGCCG 1 cut(s) 372
EciI GGCGGA 1 cut(s) 173
EclXI CGGCCG 1 cut(s) 372
Eco130I CCWWGG 3 cut(s) 121, 142, 330
Eco31I GGTCTC 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 753
Eco72I CACGTG 1 cut(s) 847
Eco88I CYCGRG 1 cut(s) 916
Eco91I GGTNACC 1 cut(s) 209
EcoO65I GGTNACC 1 cut(s) 209
EcoRI GAATTC 2 cut(s) 10, 310
EcoRII CCWGG 1 cut(s) 968
EcoT14I CCWWGG 3 cut(s) 121, 142, 330
ErhI CCWWGG 3 cut(s) 121, 142, 330
FaeI CATG 8 cut(s) 79, 125, 244, 334, 477, 634, 872, 979
FaqI GGGAC 1 cut(s) 251
FatI CATG 8 cut(s) 75, 121, 240, 330, 473, 630, 868, 975
FauI CCCGC 1 cut(s) 96
FauNDI CATATG 1 cut(s) 886
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 1001
Fnu4HI GCNGC 6 cut(s) 18, 92, 132, 375, 635, 751
FokI GGATG 2 cut(s) 461, 532
Fsp4HI GCNGC 6 cut(s) 18, 92, 132, 375, 635, 751
FspBI CTAG 3 cut(s) 543, 728, 765
GlaI GCGC 1 cut(s) 833
GluI GCNGC 6 cut(s) 18, 92, 132, 375, 635, 751
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 2 cut(s) 374, 471
HapII CCGG 4 cut(s) 163, 207, 235, 468
HgaI GACGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 834
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 8 cut(s) 79, 125, 244, 334, 477, 634, 872, 979
Hin6I GCGC 1 cut(s) 832
HinP1I GCGC 1 cut(s) 832
HincII GTYRAC 1 cut(s) 1002
HindII GTYRAC 1 cut(s) 1002
HindIII AAGCTT 1 cut(s) 705
HinfI GANTC 4 cut(s) 335, 536, 927, 983
HpaII CCGG 4 cut(s) 163, 207, 235, 468
HphI GGTGA 4 cut(s) 80, 221, 292, 733
Hpy166II GTNNAC 3 cut(s) 25, 266, 1002
Hpy188I TCNGA 6 cut(s) 294, 442, 515, 697, 912, 932
Hpy188III TCNNGA 6 cut(s) 229, 429, 497, 526, 552, 976
Hpy8I GTNNAC 3 cut(s) 25, 266, 1002
Hpy99I CGWCG 4 cut(s) 46, 61, 110, 200
HpyAV CCTTC 1 cut(s) 510
HpyCH4III ACNGT 4 cut(s) 68, 485, 657, 662
HpyCH4IV ACGT 3 cut(s) 198, 508, 846
HpyCH4V TGCA 2 cut(s) 577, 634
HpyF10VI GCNNNNNNNGC 6 cut(s) 88, 192, 201, 258, 410, 713
HpyF3I CTNAG 6 cut(s) 215, 284, 291, 322, 605, 717
HpySE526I ACGT 3 cut(s) 198, 508, 846
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 8 cut(s) 79, 125, 244, 334, 477, 634, 872, 979
HspAI GCGC 1 cut(s) 832
KroI GCCGGC 1 cut(s) 467
KroNI GCCGGC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 5 cut(s) 70, 114, 433, 548, 972
LmnI GCTCC 3 cut(s) 4, 209, 410
Lsp1109I GCAGC 3 cut(s) 4, 143, 646
LweI GCATC 2 cut(s) 634, 655
MaeI CTAG 3 cut(s) 543, 728, 765
MaeII ACGT 3 cut(s) 198, 508, 846
MaeIII GTNAC 2 cut(s) 209, 742
MalI GATC 5 cut(s) 72, 116, 435, 550, 974
MbiI CCGCTC 1 cut(s) 7
MboI GATC 5 cut(s) 70, 114, 433, 548, 972
MboII GAAGA 5 cut(s) 336, 567, 570, 746, 773
MfeI CAATTG 1 cut(s) 384
MluCI AATT 5 cut(s) 10, 310, 384, 616, 826
MlyI GAGTC 2 cut(s) 545, 921
MmeI TCCRAC 3 cut(s) 78, 337, 904
MroNI GCCGGC 1 cut(s) 467
MseI TTAA 5 cut(s) 504, 758, 771, 794, 813
MspA1I CMGCKG 2 cut(s) 17, 134
MspI CCGG 4 cut(s) 163, 207, 235, 468
MspR9I CCNGG 2 cut(s) 236, 970
MunI CAATTG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 970
MvnI CGCG 2 cut(s) 750, 834
MwoI GCNNNNNNNGC 6 cut(s) 88, 192, 201, 258, 410, 713
NaeI GCCGGC 1 cut(s) 469
NciI CCSGG 1 cut(s) 236
NcoI CCATGG 2 cut(s) 121, 330
NdeI CATATG 1 cut(s) 886
NdeII GATC 5 cut(s) 70, 114, 433, 548, 972
NgoMIV GCCGGC 1 cut(s) 467
NheI GCTAGC 1 cut(s) 727
NlaIII CATG 8 cut(s) 79, 125, 244, 334, 477, 634, 872, 979
NlaIV GGNNCC 2 cut(s) 412, 424
NmuCI GTSAC 1 cut(s) 209
PagI TCATGA 1 cut(s) 975
PdiI GCCGGC 1 cut(s) 469
PfeI GAWTC 2 cut(s) 335, 983
PflFI GACNNNGTC 1 cut(s) 40
PkrI GCNGC 6 cut(s) 19, 93, 133, 376, 636, 752
PleI GAGTC 2 cut(s) 544, 921
PmaCI CACGTG 1 cut(s) 847
PmlI CACGTG 1 cut(s) 847
PpsI GAGTC 2 cut(s) 544, 921
Ppu21I YACGTR 1 cut(s) 847
Psp6I CCWGG 1 cut(s) 968
PspCI CACGTG 1 cut(s) 847
PspEI GGTNACC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 968
PspN4I GGNNCC 2 cut(s) 412, 424
PspPI GGNCC 2 cut(s) 160, 470
PsyI GACNNNGTC 1 cut(s) 40
PvuII CAGCTG 2 cut(s) 17, 134
RsaI GTAC 3 cut(s) 487, 659, 967
RsaNI GTAC 3 cut(s) 486, 658, 966
Rsr2I CGGWCCG 1 cut(s) 160
RsrII CGGWCCG 1 cut(s) 160
SalI GTCGAC 1 cut(s) 1000
SaqAI TTAA 5 cut(s) 504, 758, 771, 794, 813
SatI GCNGC 6 cut(s) 18, 92, 132, 375, 635, 751
Sau3AI GATC 5 cut(s) 70, 114, 433, 548, 972
Sau96I GGNCC 2 cut(s) 160, 470
SchI GAGTC 2 cut(s) 545, 921
ScrFI CCNGG 2 cut(s) 236, 970
SfaNI GCATC 2 cut(s) 634, 655
SinI GGWCC 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 5 cut(s) 10, 310, 384, 616, 826
SsiI CCGC 8 cut(s) 7, 20, 89, 92, 158, 375, 750, 834
SspMI CTAG 3 cut(s) 543, 728, 765
StyD4I CCNGG 2 cut(s) 234, 968
StyI CCWWGG 3 cut(s) 121, 142, 330
TaaI ACNGT 4 cut(s) 68, 485, 657, 662
TaiI ACGT 3 cut(s) 201, 511, 849
TaqI TCGA 5 cut(s) 44, 105, 347, 527, 1001
TasI AATT 5 cut(s) 10, 310, 384, 616, 826
TatI WGTACW 1 cut(s) 485
TauI GCSGC 3 cut(s) 94, 377, 753
TfiI GAWTC 2 cut(s) 335, 983
Tru1I TTAA 5 cut(s) 504, 758, 771, 794, 813
Tru9I TTAA 5 cut(s) 504, 758, 771, 794, 813
TscAI CASTG 2 cut(s) 268, 424
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 3 cut(s) 17, 131, 634
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 4 cut(s) 92, 260, 619, 857
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 2 cut(s) 268, 424
Tth111I GACNNNGTC 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 3 cut(s) 10, 310, 616
XmiI GTMKAC 1 cut(s) 1001
XspI CTAG 3 cut(s) 543, 728, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.