Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002810.1

Orthogroup ID

OG0009524

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2090

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002810.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggagcggaattcagctgcggttcactcccaaatgacgccgtcgatgttcgggtcatcgtgggacggtgatcacatgaagcgaagcgcgccgcagttggaaatcgacgagtggatcaaccatggggtcacagctgataaccaagacgagtttcgggcggaccggagtttcgccgaaacggacggttttttcggcgacgtttgctccggtggtgacctcagcttcgctttcaagaaccgggtcatcatgaatggtttttcaagcagtggactgactgaaaccctactaagccctcagaatctcacccccaagaattccagcctctcagcaaccatggattcccagtcttcgatatgtgttggaactcccacatcggccgctaacccaattggtagagataaccaagcaagaggagccaccagtggttcctctggagatcaatcagatgaggatgattttgagatagaagccggtccatgtggagacagtacaaaccctcttgatattaaacgtatcagaaggatggtctcgaacagggagtctgctaggcgatcaagaagaagaaagcaacaacatttgcaagaacttgaggggcaggttgatatactgagagtagaaaattcaaccttattcatgcagcttacagatgcttctcaacagtaccgtgatgctgatacaaacaatagagtgctgaaatcagatgtggaagctttgagagctaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

241

Amino Acids

26.53

Weight (kDa)

4.99

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24800
fragaria_vesca	FvH4_2g36400 FvH4_2g36400 FvH4_2g36400
malus_domestica	MD08G1123300.v1.1 MD15G1102300.v1.1
prunus_persica	Prupe.1G455300_v2.0.a1
pyrus_communis	pycom08g10240 pycom08g10250 pycom15g09350
rosa_chinensis	RchiOBHm_Chr6g0305501
rosa_laevigata	RLG00000010886
rosa_multiflora	Rmu_sc0001809.1_g000001 Rmu_sc0002810.1_g000001 Rmu_sc0004319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162750
rosa_rugosa	Rorug06G0340700.1
rosa_samantha	Rh6AG452800 Rh6BG449000 Rh6CG466500 Rh6DG453200
rosa_wichuraiana	Rw6G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	586
AccBSI	CCGCTC	1 cut(s)	7
AccII	CGCG	1 cut(s)	89
AciI	CCGC	5 cut(s)	7, 20, 92, 158, 378
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	3 cut(s)	10, 313, 619
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	490, 662
AgsI	TTSAA	3 cut(s)	232, 261, 624
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	6 cut(s)	17, 134, 222, 640, 710, 719
AluI	AGCT	6 cut(s)	17, 134, 222, 640, 710, 719
Alw26I	GTCTC	2 cut(s)	477, 532
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	17, 637
ApoI	RAATTY	3 cut(s)	10, 313, 619
ArsI	GACNNNNNNTTYG	8 cut(s)	152, 173, 184, 205, 206, 238, 524, 556
AspLEI	GCGC	2 cut(s)	89, 91
AspS9I	GGNCC	2 cut(s)	160, 473
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	80, 224, 295
AvaII	GGWCC	2 cut(s)	160, 473
BbsI	GAAGAC	1 cut(s)	339
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	4, 649
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	477, 532
BfaI	CTAG	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	4 cut(s)	18, 92, 378, 638
BlsI	GCNGC	4 cut(s)	19, 93, 379, 639
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	2 cut(s)	160, 473
BmgT120I	GGNCC	2 cut(s)	160, 473
BmiI	GGNNCC	2 cut(s)	415, 427
BmrFI	CCNGG	1 cut(s)	239
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	637, 658
BmuI	ACTGGG	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	453
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	608
BpuMI	CCSGG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	532
BsaJI	CCNNGG	2 cut(s)	121, 333
BsaWI	WCCGGW	2 cut(s)	162, 206
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	343, 420
BseDI	CCNNGG	2 cut(s)	121, 333
BseGI	GGATG	2 cut(s)	457, 528
BseMII	CTCAG	4 cut(s)	232, 308, 339, 599
BseNI	ACTGG	2 cut(s)	343, 420
BsePI	GCGCGC	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	426
BseX3I	CGGCCG	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	4, 649
Bsh1236I	CGCG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	378
BsiSI	CCGG	4 cut(s)	163, 207, 238, 471
BslFI	GGGAC	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	477, 532
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	70, 114, 436, 551
Bsp19I	CCATGG	2 cut(s)	121, 333
BspACI	CCGC	5 cut(s)	7, 20, 92, 158, 378
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	4 cut(s)	231, 307, 338, 600
BspFNI	CGCG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	415, 427
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	532
BsrBI	CCGCTC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	343, 420
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	2 cut(s)	121, 333
BssHII	GCGCGC	1 cut(s)	87
BssMI	GATC	4 cut(s)	70, 114, 436, 551
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	2 cut(s)	121, 333
Bst4CI	ACNGT	5 cut(s)	68, 185, 488, 660, 665
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	6 cut(s)	218, 287, 294, 325, 608, 720
BstDSI	CCRYGG	2 cut(s)	121, 333
BstEII	GGTNACC	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	457, 528
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	2 cut(s)	89, 91
BstKTI	GATC	4 cut(s)	73, 117, 439, 554
BstMAI	GTCTC	2 cut(s)	477, 532
BstMBI	GATC	4 cut(s)	70, 114, 436, 551
BstMCI	CGRYCG	1 cut(s)	378
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 201, 413, 716
BstPI	GGTNACC	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	4, 649
BstV2I	GAAGAC	1 cut(s)	339
BstZI	CGGCCG	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	2 cut(s)	121, 333
BtsCI	GGATG	2 cut(s)	457, 528
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	271, 427
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	89
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	2 cut(s)	89, 91
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	160, 473
CpoI	CGGWCCG	1 cut(s)	160
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	489, 661
CspI	CGGWCCG	1 cut(s)	160
CviAII	CATG	6 cut(s)	76, 122, 247, 334, 477, 634
CviQI	GTAC	2 cut(s)	489, 661
DdeI	CTNAG	6 cut(s)	218, 287, 294, 325, 608, 720
DpnI	GATC	4 cut(s)	72, 116, 438, 553
DpnII	GATC	4 cut(s)	70, 114, 436, 551
EaeI	YGGCCR	1 cut(s)	375
EagI	CGGCCG	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	173
EclXI	CGGCCG	1 cut(s)	375
Eco130I	CCWWGG	2 cut(s)	121, 333
Eco31I	GGTCTC	1 cut(s)	532
Eco47I	GGWCC	2 cut(s)	160, 473
Eco52I	CGGCCG	1 cut(s)	375
Eco91I	GGTNACC	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	212
EcoRI	GAATTC	2 cut(s)	10, 313
EcoT14I	CCWWGG	2 cut(s)	121, 333
ErhI	CCWWGG	2 cut(s)	121, 333
FaeI	CATG	6 cut(s)	79, 125, 250, 337, 480, 637
FaiI	YATR	8 cut(s)	77, 123, 248, 335, 355, 478, 605, 635
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	6 cut(s)	75, 121, 246, 333, 476, 633
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	4 cut(s)	18, 92, 378, 638
FokI	GGATG	2 cut(s)	464, 535
Fsp4HI	GCNGC	4 cut(s)	18, 92, 378, 638
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	2 cut(s)	88, 90
GluI	GCNGC	4 cut(s)	18, 92, 378, 638
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	4 cut(s)	163, 207, 238, 471
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	2 cut(s)	89, 91
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	6 cut(s)	79, 125, 250, 337, 480, 637
Hin6I	GCGC	2 cut(s)	87, 89
HinP1I	GCGC	2 cut(s)	87, 89
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	3 cut(s)	298, 338, 539
HpaII	CCGG	4 cut(s)	163, 207, 238, 471
HphI	GGTGA	3 cut(s)	80, 224, 295
Hpy166II	GTNNAC	2 cut(s)	25, 269
Hpy188I	TCNGA	4 cut(s)	297, 445, 518, 700
Hpy188III	TCNNGA	6 cut(s)	232, 247, 432, 500, 529, 555
Hpy8I	GTNNAC	2 cut(s)	25, 269
Hpy99I	CGWCG	3 cut(s)	46, 110, 200
HpyAV	CCTTC	1 cut(s)	513
HpyCH4III	ACNGT	5 cut(s)	68, 185, 488, 660, 665
HpyCH4IV	ACGT	2 cut(s)	198, 511
HpyCH4V	TGCA	2 cut(s)	580, 637
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 201, 413, 716
HpyF3I	CTNAG	6 cut(s)	218, 287, 294, 325, 608, 720
HpySE526I	ACGT	2 cut(s)	198, 511
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	6 cut(s)	79, 125, 250, 337, 480, 637
HspAI	GCGC	2 cut(s)	87, 89
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	70, 114, 436, 551
LmnI	GCTCC	3 cut(s)	4, 209, 413
Lsp1109I	GCAGC	2 cut(s)	4, 649
LweI	GCATC	2 cut(s)	637, 658
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	2 cut(s)	198, 511
MaeIII	GTNAC	2 cut(s)	127, 212
MalI	GATC	4 cut(s)	72, 116, 438, 553
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	4 cut(s)	70, 114, 436, 551
MboII	GAAGA	3 cut(s)	339, 570, 573
MfeI	CAATTG	1 cut(s)	387
MluCI	AATT	4 cut(s)	10, 313, 387, 619
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	2 cut(s)	78, 340
MnlI	CCTC	8 cut(s)	227, 303, 332, 404, 439, 442, 507, 583
MseI	TTAA	1 cut(s)	507
MspA1I	CMGCKG	2 cut(s)	17, 134
MspI	CCGG	4 cut(s)	163, 207, 238, 471
MspR9I	CCNGG	1 cut(s)	239
MunI	CAATTG	1 cut(s)	387
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	4 cut(s)	88, 201, 413, 716
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	2 cut(s)	121, 333
NdeII	GATC	4 cut(s)	70, 114, 436, 551
NlaIII	CATG	6 cut(s)	79, 125, 250, 337, 480, 637
NlaIV	GGNNCC	2 cut(s)	415, 427
NmuCI	GTSAC	2 cut(s)	127, 212
PagI	TCATGA	1 cut(s)	246
PauI	GCGCGC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	298, 338
PflFI	GACNNNGTC	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	19, 93, 379, 639
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PspEI	GGTNACC	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	415, 427
PspPI	GGNCC	2 cut(s)	160, 473
PsyI	GACNNNGTC	1 cut(s)	40
PteI	GCGCGC	1 cut(s)	87
PvuII	CAGCTG	2 cut(s)	17, 134
RsaI	GTAC	2 cut(s)	490, 662
RsaNI	GTAC	2 cut(s)	489, 661
Rsr2I	CGGWCCG	1 cut(s)	160
RsrII	CGGWCCG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	4 cut(s)	18, 92, 378, 638
Sau3AI	GATC	4 cut(s)	70, 114, 436, 551
Sau96I	GGNCC	2 cut(s)	160, 473
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	239
SfaNI	GCATC	2 cut(s)	637, 658
SinI	GGWCC	2 cut(s)	160, 473
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	4 cut(s)	10, 313, 387, 619
SsiI	CCGC	5 cut(s)	7, 20, 92, 158, 378
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	121, 333
TaaI	ACNGT	5 cut(s)	68, 185, 488, 660, 665
TaiI	ACGT	2 cut(s)	201, 514
TaqI	TCGA	4 cut(s)	44, 105, 350, 530
TasI	AATT	4 cut(s)	10, 313, 387, 619
TatI	WGTACW	1 cut(s)	488
TauI	GCSGC	2 cut(s)	94, 380
TfiI	GAWTC	2 cut(s)	298, 338
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	2 cut(s)	271, 427
TseFI	GTSAC	2 cut(s)	127, 212
TseI	GCWGC	2 cut(s)	17, 637
Tsp45I	GTSAC	2 cut(s)	127, 212
TspDTI	ATGAA	3 cut(s)	92, 263, 622
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	271, 427
Tth111I	GACNNNGTC	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	160, 473
XapI	RAATTY	3 cut(s)	10, 313, 619
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.