Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009524

Physical Location & Seq

Genomic Coordinates Forward (+)

63839370 .. 63842562

Gene Structure 3193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG452800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCAGGACATGATGAATGGCTTTTCAAGCAGTGGACTGACTGAAACCCTACTAAGCCCTCAGAAACTCACCCCCAAGAATTCCAGCCTCTCAGCAACCATGGATTCCCAGTCTTCGATATGTGTTGGAACTCCCACATCGGCCGCTAACCCAATTGGTAGAGATAACCAAGCAAGAGGAGCCACCAGTGGTTCCTCTGGAGATCAATCAGATGAGGATGATTTTGAGATAGAAGCCGGCCCATGTGGAGACAGTACAAACCCTCTTGATATTAAACGTATCAGAAGGATGGTCTCGAACAGGGAGTCTGCTAGGCGATCAAGAAGAAGAAAGCAACAACATTTGCAAGAACTTGAGGGGCAGGTTGATATACTGAGAGGAGAAAATTCAACCTTATTCATGCAGCTTACAGATGCTTCTCAACAGTACCGTGATGCTGATACAAACAATAGAGTGCTGAAATCAGATGTGGAAGCTTTGAGAGCTAAGGTGAAGCTAGCTGAAGATATGGTTACTCGCGGCTCTTTAACCTCTAGCCTTAACCAACTTCTTCAAGGTCATTTAACCACACCACAACCACTTAATCCTCATACTAATTTGCGCGGTGTAGCACACGTGTCGCCAACCATTACCATTCATGGAGAGGATACCTCATATGGTGGAATAGCAATCTCTGGTCAGAACTCGGGCGTTGGACTCGGAAATGTTGCTGGTATGACTAATAGCAATATGAGTACCAGGATCATGAGTGATTCTGTAAGCTGTGTGTCGACTGATATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

261

Amino Acids

28.07

Weight (kDa)

5.74

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	91 - 140	6.1e-14	bZIP transcription factor
bZIP_2	PF07716	92 - 138	6.6e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24800
fragaria_vesca	FvH4_2g36400 FvH4_2g36400 FvH4_2g36400
malus_domestica	MD08G1123300.v1.1 MD15G1102300.v1.1
prunus_persica	Prupe.1G455300_v2.0.a1
pyrus_communis	pycom08g10240 pycom08g10250 pycom15g09350
rosa_chinensis	RchiOBHm_Chr6g0305501
rosa_laevigata	RLG00000010886
rosa_multiflora	Rmu_sc0001809.1_g000001 Rmu_sc0002810.1_g000001 Rmu_sc0004319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162750
rosa_rugosa	Rorug06G0340700.1
rosa_samantha	Rh6AG452800 Rh6BG449000 Rh6CG466500 Rh6DG453200
rosa_wichuraiana	Rw6G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	770
AccII	CGCG	2 cut(s)	519, 603
AciI	CCGC	3 cut(s)	144, 519, 603
AclWI	GGATC	1 cut(s)	749
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	79, 385
AcuI	CTGAAG	1 cut(s)	522
AcvI	CACGTG	1 cut(s)	616
AfaI	GTAC	3 cut(s)	256, 428, 736
AflIII	ACRYGT	2 cut(s)	613, 615
AgsI	TTSAA	3 cut(s)	27, 390, 554
AjnI	CCWGG	1 cut(s)	737
AluBI	AGCT	6 cut(s)	406, 476, 485, 496, 500, 762
AluI	AGCT	6 cut(s)	406, 476, 485, 496, 500, 762
Alw26I	GTCTC	2 cut(s)	243, 298
AlwI	GGATC	1 cut(s)	749
Ama87I	CYCGRG	1 cut(s)	685
AoxI	GGCC	2 cut(s)	141, 238
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	2 cut(s)	79, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	61, 502
AsuNHI	GCTAGC	1 cut(s)	496
AvaI	CYCGRG	1 cut(s)	685
BbrPI	CACGTG	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	283
BcgI	CGANNNNNNTGC	2 cut(s)	600, 634
BciT130I	CCWGG	1 cut(s)	739
BciVI	GTATCC	1 cut(s)	640
BcoDI	GTCTC	2 cut(s)	243, 298
BfaI	CTAG	3 cut(s)	312, 497, 534
BfuAI	ACCTGC	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	640
BisI	GCNGC	3 cut(s)	144, 404, 520
BlsI	GCNGC	3 cut(s)	145, 405, 521
Bme1390I	CCNGG	1 cut(s)	739
BmeT110I	CYCGRG	1 cut(s)	685
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	181, 193
BmrFI	CCNGG	1 cut(s)	739
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	403, 424
BmtI	GCTAGC	1 cut(s)	500
BmuI	ACTGGG	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	105
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	616
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	99
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	109, 186
BseBI	CCWGG	1 cut(s)	739
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	223, 294
BseMII	CTCAG	3 cut(s)	74, 105, 365
BseNI	ACTGG	2 cut(s)	109, 186
BseRI	GAGGAG	2 cut(s)	192, 393
BseX3I	CGGCCG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	2 cut(s)	519, 603
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	143, 240
BsiEI	CGRYCG	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	685
BsiSI	CCGG	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	243, 298
BsnI	GGCC	2 cut(s)	143, 240
Bso31I	GGTCTC	1 cut(s)	298
BsoBI	CYCGRG	1 cut(s)	685
Bsp143I	GATC	3 cut(s)	202, 317, 741
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	3 cut(s)	144, 519, 603
BspANI	GGCC	2 cut(s)	143, 240
BspCNI	CTCAG	3 cut(s)	73, 104, 366
BspFNI	CGCG	2 cut(s)	519, 603
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	2 cut(s)	181, 193
BspMI	ACCTGC	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	749
BspTNI	GGTCTC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	109, 186
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	202, 317, 741
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	739
Bst4CI	ACNGT	3 cut(s)	254, 426, 431
BstBAI	YACGTR	1 cut(s)	616
BstC8I	GCNNGC	2 cut(s)	238, 498
BstDEI	CTNAG	5 cut(s)	53, 60, 91, 374, 486
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	223, 294
BstFNI	CGCG	2 cut(s)	519, 603
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	3 cut(s)	205, 320, 744
BstMAI	GTCTC	2 cut(s)	243, 298
BstMBI	GATC	3 cut(s)	202, 317, 741
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 179, 482
BstNI	CCWGG	1 cut(s)	739
BstSCI	CCNGG	1 cut(s)	737
BstUI	CGCG	2 cut(s)	519, 603
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	105
BstZI	CGGCCG	1 cut(s)	141
BsuI	GTATCC	1 cut(s)	640
BsuRI	GGCC	2 cut(s)	143, 240
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	223, 294
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	37, 193
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	238, 498
CciI	TCATGA	1 cut(s)	744
CfoI	GCGC	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	255, 427, 735
CviAII	CATG	6 cut(s)	10, 100, 243, 400, 638, 745
CviQI	GTAC	3 cut(s)	255, 427, 735
DdeI	CTNAG	5 cut(s)	53, 60, 91, 374, 486
DpnI	GATC	3 cut(s)	204, 319, 743
DpnII	GATC	3 cut(s)	202, 317, 741
EaeI	YGGCCR	1 cut(s)	141
EagI	CGGCCG	1 cut(s)	141
EclXI	CGGCCG	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	298
Eco52I	CGGCCG	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	522
Eco72I	CACGTG	1 cut(s)	616
Eco88I	CYCGRG	1 cut(s)	685
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	737
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	6 cut(s)	13, 103, 246, 403, 641, 748
FatI	CATG	6 cut(s)	9, 99, 242, 399, 637, 744
FauNDI	CATATG	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	770
Fnu4HI	GCNGC	3 cut(s)	144, 404, 520
FokI	GGATG	2 cut(s)	230, 301
Fsp4HI	GCNGC	3 cut(s)	144, 404, 520
FspBI	CTAG	3 cut(s)	312, 497, 534
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	3 cut(s)	144, 404, 520
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	143, 240
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	6 cut(s)	13, 103, 246, 403, 641, 748
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	4 cut(s)	104, 305, 696, 752
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	61, 502
Hpy166II	GTNNAC	2 cut(s)	35, 771
Hpy188I	TCNGA	6 cut(s)	63, 211, 284, 466, 681, 701
Hpy188III	TCNNGA	5 cut(s)	198, 266, 295, 321, 745
Hpy8I	GTNNAC	2 cut(s)	35, 771
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	3 cut(s)	254, 426, 431
HpyCH4IV	ACGT	2 cut(s)	277, 615
HpyCH4V	TGCA	3 cut(s)	4, 346, 403
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 179, 482
HpyF3I	CTNAG	5 cut(s)	53, 60, 91, 374, 486
HpySE526I	ACGT	2 cut(s)	277, 615
Hsp92II	CATG	6 cut(s)	13, 103, 246, 403, 641, 748
HspAI	GCGC	1 cut(s)	601
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	202, 317, 741
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	403, 424
MaeI	CTAG	3 cut(s)	312, 497, 534
MaeII	ACGT	2 cut(s)	277, 615
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	3 cut(s)	204, 319, 743
MboI	GATC	3 cut(s)	202, 317, 741
MboII	GAAGA	5 cut(s)	105, 336, 339, 515, 542
MfeI	CAATTG	1 cut(s)	153
MluCI	AATT	4 cut(s)	79, 153, 385, 595
MlyI	GAGTC	2 cut(s)	314, 690
MmeI	TCCRAC	2 cut(s)	106, 673
MroNI	GCCGGC	1 cut(s)	236
MseI	TTAA	5 cut(s)	273, 527, 540, 563, 582
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	739
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	739
MvnI	CGCG	2 cut(s)	519, 603
MwoI	GCNNNNNNNGC	3 cut(s)	27, 179, 482
NaeI	GCCGGC	1 cut(s)	238
NcoI	CCATGG	1 cut(s)	99
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	3 cut(s)	202, 317, 741
NgoMIV	GCCGGC	1 cut(s)	236
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	6 cut(s)	13, 103, 246, 403, 641, 748
NlaIV	GGNNCC	2 cut(s)	181, 193
PagI	TCATGA	1 cut(s)	744
PdiI	GCCGGC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	104, 752
PkrI	GCNGC	3 cut(s)	145, 405, 521
PleI	GAGTC	2 cut(s)	313, 690
PmaCI	CACGTG	1 cut(s)	616
PmlI	CACGTG	1 cut(s)	616
PpsI	GAGTC	2 cut(s)	313, 690
Ppu21I	YACGTR	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	737
PspCI	CACGTG	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	737
PspN4I	GGNNCC	2 cut(s)	181, 193
PspPI	GGNCC	1 cut(s)	239
RsaI	GTAC	3 cut(s)	256, 428, 736
RsaNI	GTAC	3 cut(s)	255, 427, 735
SalI	GTCGAC	1 cut(s)	769
SaqAI	TTAA	5 cut(s)	273, 527, 540, 563, 582
SatI	GCNGC	3 cut(s)	144, 404, 520
Sau3AI	GATC	3 cut(s)	202, 317, 741
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	2 cut(s)	314, 690
ScrFI	CCNGG	1 cut(s)	739
SfaNI	GCATC	2 cut(s)	403, 424
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	4 cut(s)	79, 153, 385, 595
SsiI	CCGC	3 cut(s)	144, 519, 603
SspMI	CTAG	3 cut(s)	312, 497, 534
StyD4I	CCNGG	1 cut(s)	737
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	254, 426, 431
TaiI	ACGT	2 cut(s)	280, 618
TaqI	TCGA	3 cut(s)	116, 296, 770
TasI	AATT	4 cut(s)	79, 153, 385, 595
TatI	WGTACW	1 cut(s)	254
TauI	GCSGC	2 cut(s)	146, 522
TfiI	GAWTC	2 cut(s)	104, 752
Tru1I	TTAA	5 cut(s)	273, 527, 540, 563, 582
Tru9I	TTAA	5 cut(s)	273, 527, 540, 563, 582
TscAI	CASTG	2 cut(s)	37, 193
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	3 cut(s)	29, 388, 626
TspRI	CASTG	2 cut(s)	37, 193
XapI	RAATTY	2 cut(s)	79, 385
XmiI	GTMKAC	1 cut(s)	770
XspI	CTAG	3 cut(s)	312, 497, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.