Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009524

Physical Location & Seq

Genomic Coordinates Reverse (-)

8577611 .. 8579197

Gene Structure 1587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g10240.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATTCCCAGTCATCGATTTGTGATGGTTTATCAGTTGGCTGTCCAACATCGACTGCTAAACCAATTGGCAGAGATAACCAAGCAAGAGGAGCCTACGGTGGCTCGTCCGGAGAACAATCCGATGAGGATGATTTTGAGATGGAATTTGGTCCATGTGGAGACAGCACAGACCCCCTCAATATAAAACGCATTAGAAGGATGGTCTCAAATAGGGAGTCTGCTAGGCGATCAAGAAGAAGAAAGCAAGCACATCTGGTGGAGCTCGAGTTGCAGTTTGAACAACTGAGAGGAGAAAATTCAACCCTATGTATGCAGCTTACGGATGCTTCTCAACAGCTCTGCGACGCTGATACAAATAATAGAGTATTGAATTCGGACGTGGAAGCCTTGAGAGCCAAGGTGAAGCTAGCTGAAGATATGGTTGCTCGGGGCTCAATAACCTCTAGTTTGAATCAAATTCTTCAATGTCATCTAGGCACGCCGCAACCACTCAACCCTCACAATGTGCGTGGGGTAGCAGCACACGTCTCACCAACCATTACCATTCACGGACAGGATGCTCCGTATGCTGGAATTGCAGTCTCTGGACAGAACGCAGGCCTTGGACTCGGAAATGCTGGTATGGCTAATAGCAATCTGAGTAACCGGATGATGAGCGATACTGTTAGCTGTGTCTCGGATATGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

231

Amino Acids

24.74

Weight (kDa)

5.53

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24800
fragaria_vesca	FvH4_2g36400 FvH4_2g36400 FvH4_2g36400
malus_domestica	MD08G1123300.v1.1 MD15G1102300.v1.1
prunus_persica	Prupe.1G455300_v2.0.a1
pyrus_communis	pycom08g10240 pycom08g10250 pycom15g09350
rosa_chinensis	RchiOBHm_Chr6g0305501
rosa_laevigata	RLG00000010886
rosa_multiflora	Rmu_sc0001809.1_g000001 Rmu_sc0002810.1_g000001 Rmu_sc0004319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162750
rosa_rugosa	Rorug06G0340700.1
rosa_samantha	Rh6AG452800 Rh6BG449000 Rh6CG466500 Rh6DG453200
rosa_wichuraiana	Rw6G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	110
AciI	CCGC	1 cut(s)	485
AcsI	RAATTY	4 cut(s)	146, 298, 373, 459
AcuI	CTGAAG	1 cut(s)	435
AdeI	CACNNNGTG	1 cut(s)	508
AfiI	CCNNNNNNNGG	1 cut(s)	572
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	5 cut(s)	281, 303, 373, 454, 467
AjiI	CACGTC	2 cut(s)	382, 529
AluBI	AGCT	6 cut(s)	265, 319, 340, 409, 413, 672
AluI	AGCT	6 cut(s)	265, 319, 340, 409, 413, 672
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	5 cut(s)	156, 211, 535, 589, 682
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	2 cut(s)	266, 429
Aor13HI	TCCGGA	1 cut(s)	110
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	2 cut(s)	316, 521
ApoI	RAATTY	4 cut(s)	146, 298, 373, 459
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	415, 525
AsuNHI	GCTAGC	1 cut(s)	409
AvaI	CYCGRG	2 cut(s)	266, 429
AvaII	GGWCC	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	267, 437
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	328, 533
BccI	CCATC	3 cut(s)	20, 136, 196
BcoDI	GTCTC	5 cut(s)	156, 211, 535, 589, 682
BfaI	CTAG	4 cut(s)	225, 410, 447, 476
BisI	GCNGC	3 cut(s)	317, 485, 522
BlsI	GCNGC	3 cut(s)	318, 486, 523
Bme18I	GGWCC	1 cut(s)	152
BmeT110I	CYCGRG	2 cut(s)	266, 429
BmgBI	CACGTC	2 cut(s)	382, 529
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	94
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	2 cut(s)	316, 550
BmtI	GCTAGC	1 cut(s)	413
BmuI	ACTGGG	1 cut(s)	4
BpuEI	CTTGAG	1 cut(s)	412
Bsa29I	ATCGAT	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	2 cut(s)	399, 604
BsaWI	WCCGGW	2 cut(s)	110, 648
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse1I	ACTGG	1 cut(s)	10
BseAI	TCCGGA	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	399, 604
BseGI	GGATG	5 cut(s)	136, 207, 331, 565, 657
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMII	CTCAG	2 cut(s)	278, 632
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	2 cut(s)	105, 306
BseXI	GCAGC	2 cut(s)	328, 533
BshFI	GGCC	1 cut(s)	603
BshVI	ATCGAT	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	2 cut(s)	266, 429
BsiSI	CCGG	2 cut(s)	111, 649
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	5 cut(s)	156, 211, 535, 589, 682
BsmBI	CGTCTC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	603
Bso31I	GGTCTC	1 cut(s)	211
BsoBI	CYCGRG	2 cut(s)	266, 429
Bsp1286I	GDGCHC	2 cut(s)	267, 437
Bsp13I	TCCGGA	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	230
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	2 cut(s)	279, 633
BspDI	ATCGAT	1 cut(s)	17
BspEI	TCCGGA	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	94
BspOI	GCTAGC	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	399, 604
BssMI	GATC	1 cut(s)	230
BssT1I	CCWWGG	2 cut(s)	399, 604
Bst4CI	ACNGT	2 cut(s)	101, 667
BstC8I	GCNNGC	4 cut(s)	249, 411, 482, 601
BstDEI	CTNAG	2 cut(s)	287, 641
BstF5I	GGATG	5 cut(s)	136, 207, 331, 565, 657
BstKTI	GATC	1 cut(s)	233
BstMAI	GTCTC	5 cut(s)	156, 211, 535, 589, 682
BstMBI	GATC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 271, 395, 569, 578, 626
BstV1I	GCAGC	2 cut(s)	328, 533
Bsu15I	ATCGAT	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	603
BsuTUI	ATCGAT	1 cut(s)	17
BtrI	CACGTC	2 cut(s)	382, 529
BtsCI	GGATG	5 cut(s)	136, 207, 331, 565, 657
Cac8I	GCNNGC	4 cut(s)	249, 411, 482, 601
CaiI	CAGNNNCTG	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	152
ClaI	ATCGAT	1 cut(s)	17
CseI	GACGC	1 cut(s)	356
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	287, 641
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
DraIII	CACNNNGTG	1 cut(s)	508
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	399, 604
Eco147I	AGGCCT	1 cut(s)	603
Eco24I	GRGCYC	2 cut(s)	267, 437
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	435
Eco88I	CYCGRG	2 cut(s)	266, 429
EcoICRI	GAGCTC	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	399, 604
EcoT38I	GRGCYC	2 cut(s)	267, 437
ErhI	CCWWGG	2 cut(s)	399, 604
Esp3I	CGTCTC	1 cut(s)	535
FaeI	CATG	1 cut(s)	159
FaiI	YATR	8 cut(s)	157, 185, 310, 314, 422, 570, 626, 686
FatI	CATG	1 cut(s)	155
Fnu4HI	GCNGC	3 cut(s)	317, 485, 522
FokI	GGATG	5 cut(s)	143, 214, 338, 572, 664
FriOI	GRGCYC	2 cut(s)	267, 437
Fsp4HI	GCNGC	3 cut(s)	317, 485, 522
FspBI	CTAG	4 cut(s)	225, 410, 447, 476
GluI	GCNGC	3 cut(s)	317, 485, 522
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	2 cut(s)	111, 649
HgaI	GACGC	1 cut(s)	356
Hin1II	CATG	1 cut(s)	159
HinfI	GANTC	4 cut(s)	5, 218, 454, 609
HpaII	CCGG	2 cut(s)	111, 649
HphI	GGTGA	2 cut(s)	415, 525
Hpy188I	TCNGA	5 cut(s)	124, 379, 614, 642, 682
Hpy188III	TCNNGA	3 cut(s)	111, 234, 588
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	101, 667
HpyCH4IV	ACGT	2 cut(s)	381, 528
HpyCH4V	TGCA	3 cut(s)	274, 316, 581
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 271, 395, 569, 578, 626
HpyF3I	CTNAG	2 cut(s)	287, 641
HpySE526I	ACGT	2 cut(s)	381, 528
Hsp92II	CATG	1 cut(s)	159
Kpn2I	TCCGGA	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	230
LmnI	GCTCC	3 cut(s)	92, 262, 568
LpnPI	CCDG	9 cut(s)	23, 124, 242, 542, 558, 573, 585, 606, 662
Lsp1109I	GCAGC	2 cut(s)	328, 533
LweI	GCATC	2 cut(s)	316, 550
MaeI	CTAG	4 cut(s)	225, 410, 447, 476
MaeII	ACGT	2 cut(s)	381, 528
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MboII	GAAGA	4 cut(s)	249, 252, 428, 455
MfeI	CAATTG	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	267, 437
MluCI	AATT	6 cut(s)	66, 146, 298, 373, 459, 576
MlyI	GAGTC	2 cut(s)	227, 603
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	6 cut(s)	83, 121, 188, 284, 454, 510
MroI	TCCGGA	1 cut(s)	110
MspI	CCGG	2 cut(s)	111, 649
MunI	CAATTG	1 cut(s)	66
MwoI	GCNNNNNNNGC	6 cut(s)	92, 271, 395, 569, 578, 626
NdeII	GATC	1 cut(s)	230
NheI	GCTAGC	1 cut(s)	409
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	266
PceI	AGGCCT	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	5, 454
PkrI	GCNGC	3 cut(s)	318, 486, 523
PleI	GAGTC	2 cut(s)	226, 603
PpsI	GAGTC	2 cut(s)	226, 603
Psp124BI	GAGCTC	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	152
PspXI	VCTCGAGB	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	587
SacI	GAGCTC	1 cut(s)	267
SatI	GCNGC	3 cut(s)	317, 485, 522
Sau3AI	GATC	1 cut(s)	230
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	2 cut(s)	227, 603
SduI	GDGCHC	2 cut(s)	267, 437
SfaNI	GCATC	2 cut(s)	316, 550
Sfr274I	CTCGAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	266, 391
SmoI	CTYRAG	2 cut(s)	266, 391
Sse9I	AATT	6 cut(s)	66, 146, 298, 373, 459, 576
SseBI	AGGCCT	1 cut(s)	603
SsiI	CCGC	1 cut(s)	485
SspMI	CTAG	4 cut(s)	225, 410, 447, 476
SstI	GAGCTC	1 cut(s)	267
StuI	AGGCCT	1 cut(s)	603
StyI	CCWWGG	2 cut(s)	399, 604
TaaI	ACNGT	2 cut(s)	101, 667
TaiI	ACGT	2 cut(s)	384, 531
TaqI	TCGA	3 cut(s)	17, 53, 267
TasI	AATT	6 cut(s)	66, 146, 298, 373, 459, 576
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	2 cut(s)	5, 454
TseI	GCWGC	2 cut(s)	316, 521
TspGWI	ACGGA	3 cut(s)	338, 555, 567
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	4 cut(s)	146, 298, 373, 459
XhoI	CTCGAG	1 cut(s)	266
XspI	CTAG	4 cut(s)	225, 410, 447, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.