FvH4_2g36400
BZIP Family

Basic leucine zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009524
Physical Location & Seq
Reverse (-)
26664133 .. 26667163
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36400.t3

Sequence Viewer

Length: 771 bp
ATGGATGGTTTTTCAAGCAGTAATGGACTGATGGAAACCCTGTTAAGCCCTCAGAATCTCACCCCCAAGAATTCCAGCATCTCAGCAACCATGGATTCCCAGTCATCCATATGTGTTGGAACTCCCACATCGGCTGCTAACCCAGTTGGCCAAGATAACCAAGCAAGAGGAGCCACCAGCGGTTCATCTGGAGATCAGTCAGATGAGGATGATTTTGATATAGAAGCCGGTCCATGTGGAGACAGTACAGACCCTCTTGATATTAAACGTATCAGAAGGATGGTCTCGAACAGGGAGTCTGCTAGGCGATCTAGAAGAAGAAAGCAACAACATCTGCAAGAACTCGAGGGGCAGGTTGATATACTGAGGGTAGAAAATTCAACCTTATACAGGCAACTTACAGATGCTTCTCAACAGTACCGTGATGCTGATACAAACAATAGAGTGCTGAAATCAGATGTGGAAGCTTTAAGAGCTAAGGTGAAGCTAGCTGAAGATATGGTTGCTCGCGGTTCTTTAACCTCTAGCTTCAACCAACTTCTTCAAGGTCATTTGAGCATACCACAACCGCTTAATCCTCATACTTTGCGCGGTGTAGCACATGTGTCGCCAACCATTACCATTCATGGAGACGATACCTCATATGCTGGAATTGCAGTATCTGGTCAGAACTCGGGTATGGGACTCGGAAATGCTGCTGGTATGACTAATAGTAATATGGGTACCAGGATCATGAGTGATGCAGTAAGCTGTGTGTCTGATATGTGGTAA

Protein Analysis

257

Amino Acids

27.46

Weight (kDa)

5.36

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 167 - 201 6.3e-11 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 343
Acc65I GGTACC 1 cut(s) 722
AccB1I GGYRCC 1 cut(s) 722
AccII CGCG 2 cut(s) 510, 591
AciI CCGC 4 cut(s) 180, 510, 569, 591
AclWI GGATC 1 cut(s) 737
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 2 cut(s) 70, 376
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 3 cut(s) 247, 419, 724
AfiI CCNNNNNNNGG 1 cut(s) 390
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 4 cut(s) 15, 381, 532, 545
AjnI CCWGG 1 cut(s) 725
AluBI AGCT 6 cut(s) 467, 476, 487, 491, 528, 750
AluI AGCT 6 cut(s) 467, 476, 487, 491, 528, 750
Alw26I GTCTC 3 cut(s) 234, 289, 624
AlwI GGATC 1 cut(s) 737
AlwNI CAGNNNCTG 1 cut(s) 662
Ama87I CYCGRG 2 cut(s) 344, 673
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 134, 695
ApoI RAATTY 2 cut(s) 70, 376
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
Asp718I GGTACC 1 cut(s) 722
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 52, 493
AsuNHI GCTAGC 1 cut(s) 487
AvaI CYCGRG 2 cut(s) 344, 673
AvaII GGWCC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 150
BanI GGYRCC 1 cut(s) 722
BbvI GCAGC 2 cut(s) 121, 682
BccI CCATC 2 cut(s) 25, 274
BcgI CGANNNNNNTGC 2 cut(s) 588, 622
BciT130I CCWGG 1 cut(s) 727
BcoDI GTCTC 3 cut(s) 234, 289, 624
BfaI CTAG 4 cut(s) 303, 312, 488, 525
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 2 cut(s) 135, 696
BlsI GCNGC 2 cut(s) 136, 697
Bme1390I CCNGG 1 cut(s) 727
Bme18I GGWCC 1 cut(s) 230
BmeT110I CYCGRG 2 cut(s) 344, 673
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 172, 724
BmrFI CCNGG 1 cut(s) 727
BmrI ACTGGG 2 cut(s) 94, 137
BmsI GCATC 4 cut(s) 87, 394, 415, 730
BmtI GCTAGC 1 cut(s) 491
BmuI ACTGGG 2 cut(s) 94, 137
BpmI CTGGAG 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 100, 143
BseBI CCWGG 1 cut(s) 727
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 4 cut(s) 10, 104, 214, 285
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMII CTCAG 3 cut(s) 65, 96, 356
BseNI ACTGG 2 cut(s) 100, 143
BseRI GAGGAG 1 cut(s) 183
BseXI GCAGC 2 cut(s) 121, 682
Bsh1236I CGCG 2 cut(s) 510, 591
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 722
BsiHKCI CYCGRG 2 cut(s) 344, 673
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 3 cut(s) 234, 289, 624
BsmBI CGTCTC 1 cut(s) 624
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 2 cut(s) 344, 673
Bsp143I GATC 3 cut(s) 193, 308, 729
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 4 cut(s) 180, 510, 569, 591
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 3 cut(s) 64, 95, 357
BspFNI CGCG 2 cut(s) 510, 591
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 2 cut(s) 172, 724
BspMI ACCTGC 1 cut(s) 343
BspOI GCTAGC 1 cut(s) 491
BspPI GGATC 1 cut(s) 737
BspT107I GGYRCC 1 cut(s) 722
BspTNI GGTCTC 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 2 cut(s) 100, 143
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 193, 308, 729
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 727
Bst4CI ACNGT 3 cut(s) 245, 417, 422
BstC8I GCNNGC 2 cut(s) 489, 508
BstDEI CTNAG 4 cut(s) 51, 82, 365, 477
BstDSI CCRYGG 1 cut(s) 90
BstENI CCTNNNNNAGG 1 cut(s) 388
BstF5I GGATG 4 cut(s) 10, 104, 214, 285
BstFNI CGCG 2 cut(s) 510, 591
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 3 cut(s) 196, 311, 732
BstMAI GTCTC 3 cut(s) 234, 289, 624
BstMBI GATC 3 cut(s) 193, 308, 729
BstMWI GCNNNNNNNGC 3 cut(s) 170, 473, 653
BstNI CCWGG 1 cut(s) 727
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 1 cut(s) 725
BstUI CGCG 2 cut(s) 510, 591
BstV1I GCAGC 2 cut(s) 121, 682
BsuRI GGCC 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 4 cut(s) 10, 104, 214, 285
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 489, 508
CaiI CAGNNNCTG 1 cut(s) 662
CciI TCATGA 1 cut(s) 732
CfoI GCGC 1 cut(s) 591
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 3 cut(s) 246, 418, 723
CviAII CATG 5 cut(s) 91, 234, 602, 626, 733
CviQI GTAC 3 cut(s) 246, 418, 723
DdeI CTNAG 4 cut(s) 51, 82, 365, 477
DpnI GATC 3 cut(s) 195, 310, 731
DpnII GATC 3 cut(s) 193, 308, 729
EaeI YGGCCR 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 513
Eco88I CYCGRG 2 cut(s) 344, 673
EcoNI CCTNNNNNAGG 1 cut(s) 388
EcoRI GAATTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 725
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
Esp3I CGTCTC 1 cut(s) 624
FaeI CATG 5 cut(s) 94, 237, 605, 629, 736
FaqI GGGAC 1 cut(s) 696
FatI CATG 5 cut(s) 90, 233, 601, 625, 732
FauNDI CATATG 2 cut(s) 110, 643
Fnu4HI GCNGC 2 cut(s) 135, 696
FokI GGATG 4 cut(s) 17, 91, 221, 292
Fsp4HI GCNGC 2 cut(s) 135, 696
FspBI CTAG 4 cut(s) 303, 312, 488, 525
GlaI GCGC 1 cut(s) 590
GluI GCNGC 2 cut(s) 135, 696
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 591
Hin1II CATG 5 cut(s) 94, 237, 605, 629, 736
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 4 cut(s) 55, 95, 296, 684
HpaII CCGG 1 cut(s) 228
HphI GGTGA 2 cut(s) 52, 493
Hpy188I TCNGA 7 cut(s) 54, 202, 275, 457, 669, 689, 760
Hpy188III TCNNGA 5 cut(s) 189, 257, 286, 312, 733
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 3 cut(s) 245, 417, 422
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 3 cut(s) 337, 656, 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 473, 653
HpyF3I CTNAG 4 cut(s) 51, 82, 365, 477
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 5 cut(s) 94, 237, 605, 629, 736
HspAI GCGC 1 cut(s) 589
KpnI GGTACC 1 cut(s) 726
Kzo9I GATC 3 cut(s) 193, 308, 729
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 2 cut(s) 121, 682
LweI GCATC 4 cut(s) 87, 394, 415, 730
MaeI CTAG 4 cut(s) 303, 312, 488, 525
MaeII ACGT 1 cut(s) 268
MalI GATC 3 cut(s) 195, 310, 731
MboI GATC 3 cut(s) 193, 308, 729
MboII GAAGA 4 cut(s) 327, 330, 506, 533
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 3 cut(s) 70, 376, 651
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 2 cut(s) 305, 678
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 9 cut(s) 60, 161, 199, 264, 340, 360, 532, 588, 649
Mox20I TGGCCA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 150
MseI TTAA 5 cut(s) 44, 264, 470, 518, 573
MslI CAYNNNNRTG 1 cut(s) 109
Msp20I TGGCCA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 180
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 727
MvaI CCWGG 1 cut(s) 727
MvnI CGCG 2 cut(s) 510, 591
MwoI GCNNNNNNNGC 3 cut(s) 170, 473, 653
NcoI CCATGG 1 cut(s) 90
NdeI CATATG 2 cut(s) 110, 643
NdeII GATC 3 cut(s) 193, 308, 729
NheI GCTAGC 1 cut(s) 487
NlaIII CATG 5 cut(s) 94, 237, 605, 629, 736
NlaIV GGNNCC 2 cut(s) 172, 724
NspI RCATGY 1 cut(s) 605
PaeR7I CTCGAG 1 cut(s) 344
PagI TCATGA 1 cut(s) 732
PciI ACATGT 1 cut(s) 601
PfeI GAWTC 2 cut(s) 55, 95
PkrI GCNGC 2 cut(s) 136, 697
PleI GAGTC 2 cut(s) 304, 678
PpsI GAGTC 2 cut(s) 304, 678
PscI ACATGT 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 725
PspGI CCWGG 1 cut(s) 725
PspN4I GGNNCC 2 cut(s) 172, 724
PspPI GGNCC 1 cut(s) 230
PspXI VCTCGAGB 1 cut(s) 344
PstNI CAGNNNCTG 1 cut(s) 662
RsaI GTAC 3 cut(s) 247, 419, 724
RsaNI GTAC 3 cut(s) 246, 418, 723
RseI CAYNNNNRTG 1 cut(s) 109
SaqAI TTAA 5 cut(s) 44, 264, 470, 518, 573
SatI GCNGC 2 cut(s) 135, 696
Sau3AI GATC 3 cut(s) 193, 308, 729
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 2 cut(s) 305, 678
ScrFI CCNGG 1 cut(s) 727
SfaNI GCATC 4 cut(s) 87, 394, 415, 730
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 3 cut(s) 70, 376, 651
SsiI CCGC 4 cut(s) 180, 510, 569, 591
SspMI CTAG 4 cut(s) 303, 312, 488, 525
StyD4I CCNGG 1 cut(s) 725
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 3 cut(s) 245, 417, 422
TaiI ACGT 1 cut(s) 271
TaqI TCGA 2 cut(s) 287, 345
TasI AATT 3 cut(s) 70, 376, 651
TatI WGTACW 1 cut(s) 245
TfiI GAWTC 2 cut(s) 55, 95
Tru1I TTAA 5 cut(s) 44, 264, 470, 518, 573
Tru9I TTAA 5 cut(s) 44, 264, 470, 518, 573
TseI GCWGC 2 cut(s) 134, 695
TspDTI ATGAA 2 cut(s) 174, 614
VpaK11BI GGWCC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 388
XapI RAATTY 2 cut(s) 70, 376
XbaI TCTAGA 1 cut(s) 311
XceI RCATGY 1 cut(s) 605
XhoI CTCGAG 1 cut(s) 344
XspI CTAG 4 cut(s) 303, 312, 488, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.