Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009524

Physical Location & Seq

Genomic Coordinates Reverse (-)

66355022 .. 66358163

Gene Structure 3142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG449000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCAGGACATGATGAATGGTTTTTCAAGCAGTGGACTGACTGAAACCCTACTAAGCCCTCAGAATCTCACCCCCAAGAATTCCAGCCTCTCAGCAACCATGGATTCCCAGTCATCGATATGTGTTGGAACTCCCACATCGGCCGCTAACCCAATTGGTAGAGATAACCAAGCAAGAGGAGCCACCAGTGGTTCCTCTGGAGATCAATCAGATGAGGATGATTTTGAGATAGAAGCCGGTCCATGTGGAGACAGTACAGACCCTCTTGATATTAAACGTATCAGAAGGATGGTCTCGAACAGGGAGTCTGCTAGGCGATCAAGAAGAAGAAAGCAACAACATTTGCAAGAACTTGAGGGGCAGGTTGATATACTGAGAGTAGAAAATTCAACCTTATTAATTCAGCTTACAGATGCTTCTCAACAGTACCGTGATGCTGATACAAACAATAGAGTGCTGAAATCAGATGTGGAAGCTTTGAGAGCTAAGGTGAAGCTAGCTGAAGATATGGTTGCTCGCGGCTCTTTAACCTCTAGCCTTAACCAACTTCTTCAAGGTCATTTAACCACACCACAACCACTTAATCCTCATACTAATTTGCGCGGTGTAGCACATGTGTCGCCAACCATTACCATTCATGGAGAGGATACCTCATATGGTGGAATAGCAGTCTCTGGTCAGAACTCGGAAATGCTTGTTGGACTCGGAAATGCTGCTGGTATGACTAATAGCAATATGAGTACCAGGATCATGAGTGATGCTGTAAGCTGTGTGTCGACTGATATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

263

Amino Acids

28.28

Weight (kDa)

5.25

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	91 - 142	5.2e-14	bZIP transcription factor
bZIP_2	PF07716	92 - 137	4.5e-08	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24800
fragaria_vesca	FvH4_2g36400 FvH4_2g36400 FvH4_2g36400
malus_domestica	MD08G1123300.v1.1 MD15G1102300.v1.1
prunus_persica	Prupe.1G455300_v2.0.a1
pyrus_communis	pycom08g10240 pycom08g10250 pycom15g09350
rosa_chinensis	RchiOBHm_Chr6g0305501
rosa_laevigata	RLG00000010886
rosa_multiflora	Rmu_sc0001809.1_g000001 Rmu_sc0002810.1_g000001 Rmu_sc0004319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162750
rosa_rugosa	Rorug06G0340700.1
rosa_samantha	Rh6AG452800 Rh6BG449000 Rh6CG466500 Rh6DG453200
rosa_wichuraiana	Rw6G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	776
AccII	CGCG	2 cut(s)	519, 603
AciI	CCGC	3 cut(s)	144, 519, 603
AclWI	GGATC	1 cut(s)	755
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	79, 385
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	3 cut(s)	256, 428, 742
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	3 cut(s)	27, 390, 554
AjnI	CCWGG	1 cut(s)	743
AjuI	GAANNNNNNNTTGG	2 cut(s)	681, 713
AluBI	AGCT	6 cut(s)	406, 476, 485, 496, 500, 768
AluI	AGCT	6 cut(s)	406, 476, 485, 496, 500, 768
Alw26I	GTCTC	3 cut(s)	243, 298, 676
AlwI	GGATC	1 cut(s)	755
AlwNI	CAGNNNCTG	1 cut(s)	674
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	713
ApoI	RAATTY	2 cut(s)	79, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AseI	ATTAAT	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	61, 502
AsuNHI	GCTAGC	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	700
BccI	CCATC	1 cut(s)	283
BcgI	CGANNNNNNTGC	2 cut(s)	600, 634
BciT130I	CCWGG	1 cut(s)	745
BciVI	GTATCC	1 cut(s)	640
BcoDI	GTCTC	3 cut(s)	243, 298, 676
BfaI	CTAG	3 cut(s)	312, 497, 534
BfuAI	ACCTGC	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	640
BisI	GCNGC	3 cut(s)	144, 520, 714
BlsI	GCNGC	3 cut(s)	145, 521, 715
Bme1390I	CCNGG	1 cut(s)	745
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	181, 193
BmrFI	CCNGG	1 cut(s)	745
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	3 cut(s)	403, 424, 748
BmtI	GCTAGC	1 cut(s)	500
BmuI	ACTGGG	1 cut(s)	103
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	374
Bsa29I	ATCGAT	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	99
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	109, 186
BseBI	CCWGG	1 cut(s)	745
BseCI	ATCGAT	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	223, 294
BseMII	CTCAG	3 cut(s)	74, 105, 365
BseNI	ACTGG	2 cut(s)	109, 186
BseRI	GAGGAG	1 cut(s)	192
BseX3I	CGGCCG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	700
Bsh1236I	CGCG	2 cut(s)	519, 603
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	237
BsmAI	GTCTC	3 cut(s)	243, 298, 676
BsnI	GGCC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	298
Bsp143I	GATC	3 cut(s)	202, 317, 747
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	3 cut(s)	144, 519, 603
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	3 cut(s)	73, 104, 366
BspDI	ATCGAT	1 cut(s)	116
BspFNI	CGCG	2 cut(s)	519, 603
BspHI	TCATGA	1 cut(s)	750
BspLI	GGNNCC	2 cut(s)	181, 193
BspMI	ACCTGC	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	109, 186
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	202, 317, 747
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	745
Bst4CI	ACNGT	3 cut(s)	254, 426, 431
BstC8I	GCNNGC	2 cut(s)	498, 517
BstDEI	CTNAG	5 cut(s)	53, 60, 91, 374, 486
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	223, 294
BstFNI	CGCG	2 cut(s)	519, 603
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	3 cut(s)	205, 320, 750
BstMAI	GTCTC	3 cut(s)	243, 298, 676
BstMBI	GATC	3 cut(s)	202, 317, 747
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 482
BstNI	CCWGG	1 cut(s)	745
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	1 cut(s)	743
BstUI	CGCG	2 cut(s)	519, 603
BstV1I	GCAGC	1 cut(s)	700
BstZI	CGGCCG	1 cut(s)	141
Bsu15I	ATCGAT	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	640
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	223, 294
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	37, 193
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	498, 517
CaiI	CAGNNNCTG	1 cut(s)	674
CciI	TCATGA	1 cut(s)	750
CfoI	GCGC	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	239
ClaI	ATCGAT	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	255, 427, 741
CviAII	CATG	6 cut(s)	10, 100, 243, 614, 638, 751
CviQI	GTAC	3 cut(s)	255, 427, 741
DdeI	CTNAG	5 cut(s)	53, 60, 91, 374, 486
DpnI	GATC	3 cut(s)	204, 319, 749
DpnII	GATC	3 cut(s)	202, 317, 747
EaeI	YGGCCR	1 cut(s)	141
EagI	CGGCCG	1 cut(s)	141
EclXI	CGGCCG	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	239
Eco52I	CGGCCG	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	743
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	6 cut(s)	13, 103, 246, 617, 641, 754
FatI	CATG	6 cut(s)	9, 99, 242, 613, 637, 750
FauNDI	CATATG	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	776
Fnu4HI	GCNGC	3 cut(s)	144, 520, 714
FokI	GGATG	2 cut(s)	230, 301
Fsp4HI	GCNGC	3 cut(s)	144, 520, 714
FspBI	CTAG	3 cut(s)	312, 497, 534
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	3 cut(s)	144, 520, 714
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	6 cut(s)	13, 103, 246, 617, 641, 754
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	4 cut(s)	64, 104, 305, 702
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	61, 502
Hpy166II	GTNNAC	2 cut(s)	35, 777
Hpy188I	TCNGA	7 cut(s)	63, 211, 284, 466, 681, 688, 707
Hpy188III	TCNNGA	5 cut(s)	198, 266, 295, 321, 751
Hpy8I	GTNNAC	2 cut(s)	35, 777
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	3 cut(s)	254, 426, 431
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	2 cut(s)	4, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 482
HpyF3I	CTNAG	5 cut(s)	53, 60, 91, 374, 486
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	6 cut(s)	13, 103, 246, 617, 641, 754
HspAI	GCGC	1 cut(s)	601
Kzo9I	GATC	3 cut(s)	202, 317, 747
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	1 cut(s)	700
LweI	GCATC	3 cut(s)	403, 424, 748
MaeI	CTAG	3 cut(s)	312, 497, 534
MaeII	ACGT	1 cut(s)	277
MalI	GATC	3 cut(s)	204, 319, 749
MboI	GATC	3 cut(s)	202, 317, 747
MboII	GAAGA	4 cut(s)	336, 339, 515, 542
MfeI	CAATTG	1 cut(s)	153
MluCI	AATT	5 cut(s)	79, 153, 385, 399, 595
MlyI	GAGTC	2 cut(s)	314, 696
MmeI	TCCRAC	2 cut(s)	106, 679
MseI	TTAA	6 cut(s)	273, 398, 527, 540, 563, 582
MslI	CAYNNNNRTG	1 cut(s)	118
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	745
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	745
MvnI	CGCG	2 cut(s)	519, 603
MwoI	GCNNNNNNNGC	2 cut(s)	179, 482
NcoI	CCATGG	1 cut(s)	99
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	3 cut(s)	202, 317, 747
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	6 cut(s)	13, 103, 246, 617, 641, 754
NlaIV	GGNNCC	2 cut(s)	181, 193
NspI	RCATGY	1 cut(s)	617
PagI	TCATGA	1 cut(s)	750
PciI	ACATGT	1 cut(s)	613
PfeI	GAWTC	2 cut(s)	64, 104
PkrI	GCNGC	3 cut(s)	145, 521, 715
PleI	GAGTC	2 cut(s)	313, 696
PpsI	GAGTC	2 cut(s)	313, 696
PscI	ACATGT	1 cut(s)	613
PshBI	ATTAAT	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	743
PspGI	CCWGG	1 cut(s)	743
PspN4I	GGNNCC	2 cut(s)	181, 193
PspPI	GGNCC	1 cut(s)	239
PstNI	CAGNNNCTG	1 cut(s)	674
RsaI	GTAC	3 cut(s)	256, 428, 742
RsaNI	GTAC	3 cut(s)	255, 427, 741
RseI	CAYNNNNRTG	1 cut(s)	118
SalI	GTCGAC	1 cut(s)	775
SaqAI	TTAA	6 cut(s)	273, 398, 527, 540, 563, 582
SatI	GCNGC	3 cut(s)	144, 520, 714
Sau3AI	GATC	3 cut(s)	202, 317, 747
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	2 cut(s)	314, 696
ScrFI	CCNGG	1 cut(s)	745
SfaNI	GCATC	3 cut(s)	403, 424, 748
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	5 cut(s)	79, 153, 385, 399, 595
SsiI	CCGC	3 cut(s)	144, 519, 603
SspMI	CTAG	3 cut(s)	312, 497, 534
StyD4I	CCNGG	1 cut(s)	743
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	254, 426, 431
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	3 cut(s)	116, 296, 776
TasI	AATT	5 cut(s)	79, 153, 385, 399, 595
TatI	WGTACW	1 cut(s)	254
TauI	GCSGC	2 cut(s)	146, 522
TfiI	GAWTC	2 cut(s)	64, 104
Tru1I	TTAA	6 cut(s)	273, 398, 527, 540, 563, 582
Tru9I	TTAA	6 cut(s)	273, 398, 527, 540, 563, 582
TscAI	CASTG	2 cut(s)	37, 193
TseI	GCWGC	1 cut(s)	713
TspDTI	ATGAA	2 cut(s)	29, 626
TspRI	CASTG	2 cut(s)	37, 193
VpaK11BI	GGWCC	1 cut(s)	239
VspI	ATTAAT	1 cut(s)	398
XapI	RAATTY	2 cut(s)	79, 385
XceI	RCATGY	1 cut(s)	617
XmiI	GTMKAC	1 cut(s)	776
XspI	CTAG	3 cut(s)	312, 497, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.