AT5G25490

zinc finger (Ran-binding) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006028
Physical Location & Seq
Forward (+)
8876321 .. 8877904
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G25490.1

Sequence Viewer

Length: 513 bp
ATGAATAGGCCGGGAGATTGGAACTGCAGATTGTGTAGCCACCTCAACTTCCAGAGGAGGGATTCATGCCAACGTTGTAGAGAGCCTAGACCGGGCGGGATCAGTACCGATTTACTCAGCGGTTTTGGTGGCCGTCCGGTTAGTAGCTCCTTCGGTTTCAACACCGGGCCCGATGTGCGACCCGGGGATTGGTATTGCAACCTTGGGGATTGTGGGACACATAATTTTGCCAATAGGTCCAGTTGTTTCAAGTGTGGTGCCGCAAAAGATGAGTTTTCATGCTCAAGTGCTGCTGCAACAACCGGGTTTATGGACATGAATGTTGGTCCGAGACGTGGCCTTTTTGGTTTTGGCGGCAGCAGTAGTGGTGGTGGTGGTACGGGCCGTTCTCCTTGGAAATCTGGAGATTGGATTTGCCCAAGGTCAGGCTGTAACGAACATAACTTCGCAAGCAGGTCAGAGTGTTTCAGGTGTAACGCACCAAAGGAACTTGCCACCGAACCACCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

170

Amino Acids

18.33

Weight (kDa)

8.61

Isoelectric Point (pI)

56.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 133 - 163 1.8e-09 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 257
AciI CCGC 4 cut(s) 96, 120, 261, 354
AclI AACGTT 1 cut(s) 73
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 130
AfaI GTAC 2 cut(s) 106, 379
AfiI CCNNNNNNNGG 5 cut(s) 58, 92, 189, 335, 425
AgsI TTSAA 2 cut(s) 160, 250
AjiI CACGTC 1 cut(s) 335
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 5 cut(s) 8, 130, 167, 337, 382
ApaI GGGCCC 1 cut(s) 171
ApeKI GCWGC 3 cut(s) 290, 293, 357
AspS9I GGNCC 5 cut(s) 167, 168, 237, 326, 382
AsuC2I CCSGG 6 cut(s) 12, 93, 166, 183, 184, 304
AvaI CYCGRG 1 cut(s) 182
AvaII GGWCC 2 cut(s) 237, 326
BaeGI GKGCMC 1 cut(s) 171
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 277, 280, 369
BceAI ACGGC 2 cut(s) 117, 369
BcnI CCSGG 6 cut(s) 12, 93, 166, 183, 184, 304
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 444
BisI GCNGC 5 cut(s) 261, 291, 294, 355, 358
BlsI GCNGC 5 cut(s) 262, 292, 295, 356, 359
Bme1390I CCNGG 6 cut(s) 12, 93, 166, 183, 184, 304
Bme18I GGWCC 2 cut(s) 237, 326
BmeT110I CYCGRG 1 cut(s) 182
BmgBI CACGTC 1 cut(s) 335
BmgT120I GGNCC 5 cut(s) 167, 168, 237, 326, 382
BmiI GGNNCC 2 cut(s) 169, 259
BmrFI CCNGG 6 cut(s) 12, 93, 166, 183, 184, 304
BpmI CTGGAG 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 6 cut(s) 12, 93, 166, 183, 184, 304
BsaJI CCNNGG 5 cut(s) 182, 183, 202, 392, 419
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 92, 189, 335, 425
Bse1I ACTGG 1 cut(s) 240
BseDI CCNNGG 5 cut(s) 182, 183, 202, 392, 419
BseLI CCNNNNNNNGG 5 cut(s) 58, 92, 189, 335, 425
BseMII CTCAG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 3 cut(s) 277, 280, 369
BshFI GGCC 5 cut(s) 10, 132, 169, 339, 384
BshNI GGYRCC 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 6 cut(s) 11, 92, 137, 165, 183, 303
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 5 cut(s) 58, 92, 189, 335, 425
BsmAI GTCTC 1 cut(s) 325
BsmBI CGTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 5 cut(s) 10, 132, 169, 339, 384
BsoBI CYCGRG 1 cut(s) 182
Bsp120I GGGCCC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 4 cut(s) 96, 120, 261, 354
BspANI GGCC 5 cut(s) 10, 132, 169, 339, 384
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 169, 259
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 5 cut(s) 182, 183, 202, 392, 419
BssMI GATC 1 cut(s) 99
BssT1I CCWWGG 3 cut(s) 202, 392, 419
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 1 cut(s) 116
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstSCI CCNGG 6 cut(s) 10, 91, 164, 181, 182, 302
BstSFI CTRYAG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 171
BstV1I GCAGC 3 cut(s) 277, 280, 369
BsuRI GGCC 5 cut(s) 10, 132, 169, 339, 384
BtrI CACGTC 1 cut(s) 335
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 451
Cfr13I GGNCC 5 cut(s) 167, 168, 237, 326, 382
Cfr9I CCCGGG 1 cut(s) 182
Csp6I GTAC 2 cut(s) 105, 378
CviAII CATG 3 cut(s) 66, 279, 316
CviJI RGCY 9 cut(s) 10, 39, 85, 132, 147, 169, 339, 384, 429
CviKI_1 RGCY 9 cut(s) 10, 39, 85, 132, 147, 169, 339, 384, 429
CviQI GTAC 2 cut(s) 105, 378
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 130
Eco130I CCWWGG 3 cut(s) 202, 392, 419
Eco24I GRGCYC 1 cut(s) 171
Eco47I GGWCC 2 cut(s) 237, 326
Eco88I CYCGRG 1 cut(s) 182
EcoT14I CCWWGG 3 cut(s) 202, 392, 419
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 3 cut(s) 202, 392, 419
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 3 cut(s) 69, 282, 319
FaiI YATR 6 cut(s) 67, 222, 280, 311, 317, 441
FaqI GGGAC 1 cut(s) 229
FatI CATG 3 cut(s) 65, 278, 315
FauI CCCGC 1 cut(s) 89
Fnu4HI GCNGC 5 cut(s) 261, 291, 294, 355, 358
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 5 cut(s) 261, 291, 294, 355, 358
FspBI CTAG 1 cut(s) 87
GluI GCNGC 5 cut(s) 261, 291, 294, 355, 358
GsuI CTGGAG 1 cut(s) 423
HaeIII GGCC 5 cut(s) 10, 132, 169, 339, 384
HapII CCGG 6 cut(s) 11, 92, 137, 165, 183, 303
Hin1II CATG 3 cut(s) 69, 282, 319
HinfI GANTC 1 cut(s) 62
HpaII CCGG 6 cut(s) 11, 92, 137, 165, 183, 303
Hpy188I TCNGA 2 cut(s) 330, 460
Hpy188III TCNNGA 2 cut(s) 52, 402
HpyAV CCTTC 1 cut(s) 160
HpyCH4IV ACGT 2 cut(s) 73, 334
HpyCH4V TGCA 3 cut(s) 27, 198, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 2 cut(s) 73, 334
Hsp92II CATG 3 cut(s) 69, 282, 319
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 152
Lsp1109I GCAGC 3 cut(s) 277, 280, 369
MaeI CTAG 1 cut(s) 87
MaeII ACGT 2 cut(s) 73, 334
MaeIII GTNAC 2 cut(s) 431, 473
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 1 cut(s) 223
MnlI CCTC 3 cut(s) 48, 51, 53
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 6 cut(s) 11, 92, 137, 165, 183, 303
MspR9I CCNGG 6 cut(s) 12, 93, 166, 183, 184, 304
MwoI GCNNNNNNNGC 1 cut(s) 175
NciI CCSGG 6 cut(s) 12, 93, 166, 183, 184, 304
NdeII GATC 1 cut(s) 99
NlaIII CATG 3 cut(s) 69, 282, 319
NlaIV GGNNCC 2 cut(s) 169, 259
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 5 cut(s) 262, 292, 295, 356, 359
Psp1406I AACGTT 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 169, 259
PspOMI GGGCCC 1 cut(s) 167
PspPI GGNCC 5 cut(s) 167, 168, 237, 326, 382
PsrI GAACNNNNNNTAC 2 cut(s) 370, 402
PstI CTGCAG 1 cut(s) 29
RsaI GTAC 2 cut(s) 106, 379
RsaNI GTAC 2 cut(s) 105, 378
SatI GCNGC 5 cut(s) 261, 291, 294, 355, 358
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 5 cut(s) 167, 168, 237, 326, 382
ScrFI CCNGG 6 cut(s) 12, 93, 166, 183, 184, 304
SduI GDGCHC 1 cut(s) 171
SetI ASST 9 cut(s) 45, 76, 149, 204, 239, 337, 425, 458, 473
SfcI CTRYAG 1 cut(s) 25
SinI GGWCC 2 cut(s) 237, 326
SmaI CCCGGG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 1 cut(s) 223
SsiI CCGC 4 cut(s) 96, 120, 261, 354
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 6 cut(s) 10, 91, 164, 181, 182, 302
StyI CCWWGG 3 cut(s) 202, 392, 419
TaiI ACGT 2 cut(s) 76, 337
TasI AATT 1 cut(s) 223
TauI GCSGC 2 cut(s) 263, 357
TfiI GAWTC 1 cut(s) 62
TseI GCWGC 3 cut(s) 290, 293, 357
TspDTI ATGAA 4 cut(s) 17, 54, 267, 332
TspMI CCCGGG 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 237, 326
XmaI CCCGGG 1 cut(s) 182
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.