Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006543.1

Orthogroup ID

OG0006028

Physical Location & Seq

Genomic Coordinates Forward (+)

19995 .. 20622

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006543.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgaataggccaggagattggaactgcaggtcatgcaaccatctcaacttccaaaggagggactcatgccagaggtgtggggaaccaaggcccggggagagaggtggtgaatttggaagctttggtggcggaagaggtggaggtgttggtggttcgtttgggttcactaccggcccggatgtcaggcctggtgactggtactgcaacgttggaaactgtggagctcataactttgccagccgctccagctgcttcaagtgtggtgcgtccaaggacgagtcctctagtggcggtggtggctttgacggtgacatgcctaggtcacttagaggcggttttggatttggcggcagtggcagtggtagtggtggcagctctggtcgctctggatggaaatccggggactggatttgcacaaggttagggtgcaatgagcacaacttcgcaagcaggacggaatgtttcagatgcaatgctccaagggaatctagtaccggcaagtctccatataattatatcaatttgttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

176

Amino Acids

18.5

Weight (kDa)

8.79

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25490 AT5G25490
fragaria_vesca	FvH4_2g29540 FvH4_2g29540 FvH4_2g29540
malus_domestica	MD08G1146100.v1.1 MD15G1121500.v1.1
prunus_persica	Prupe.1G474600_v2.0.a1 Prupe.1G474600_v2.0.a1 Prupe.1G474600_v2.0.a1 Prupe.1G474600_v2.0.a1 Prupe.1G474600_v2.0.a1 Prupe.1G474600_v2.0.a1
pyrus_communis	pycom08g12320 pycom15g10970
rosa_chinensis	RchiOBHm_Chr6g0298401
rosa_laevigata	RLG00000011516
rosa_multiflora	Rmu_co8335535.1_g000001 Rmu_sc0006543.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169680
rosa_rugosa	Rorug06G0280600 Rorug06G0280700
rosa_samantha	Rh6AG391600 Rh6BG399200 Rh6CG405300 Rh6DG391700
rosa_wichuraiana	Rw6G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccBSI	CCGCTC	1 cut(s)	243
AciI	CCGC	5 cut(s)	129, 241, 291, 333, 348
AclI	AACGTT	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	110
AfaI	GTAC	2 cut(s)	200, 493
AfiI	CCNNNNNNNGG	3 cut(s)	58, 92, 405
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	10, 187
AluBI	AGCT	4 cut(s)	120, 224, 249, 375
AluI	AGCT	4 cut(s)	120, 224, 249, 375
Alw21I	GWGCWC	2 cut(s)	226, 438
Alw26I	GTCTC	1 cut(s)	507
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	4 cut(s)	8, 89, 172, 185
ApeKI	GCWGC	2 cut(s)	249, 372
ApoI	RAATTY	1 cut(s)	110
AspA2I	CCTAGG	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	90, 173
AsuC2I	CCSGG	4 cut(s)	93, 94, 176, 400
AsuHPI	GGTGA	3 cut(s)	119, 203, 320
AvaI	CYCGRG	1 cut(s)	92
AvrII	CCTAGG	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	2 cut(s)	226, 438
BbvI	GCAGC	2 cut(s)	236, 384
BccI	CCATC	2 cut(s)	48, 384
BciT130I	CCWGG	2 cut(s)	12, 189
BcnI	CCSGG	4 cut(s)	93, 94, 176, 400
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	3 cut(s)	285, 318, 489
BfmI	CTRYAG	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	4 cut(s)	241, 250, 349, 373
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	4 cut(s)	242, 251, 350, 374
Bme1390I	CCNGG	6 cut(s)	12, 93, 94, 176, 189, 400
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	90, 173
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	6 cut(s)	12, 93, 94, 176, 189, 400
BmsI	GCATC	1 cut(s)	458
BpmI	CTGGAG	1 cut(s)	229
BpuMI	CCSGG	4 cut(s)	93, 94, 176, 400
BsaBI	GATNNNNATC	1 cut(s)	394
BsaJI	CCNNGG	7 cut(s)	86, 92, 93, 270, 317, 399, 479
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 92, 405
Bse118I	RCCGGY	2 cut(s)	170, 494
Bse1I	ACTGG	2 cut(s)	200, 410
Bse3DI	GCAATG	2 cut(s)	436, 478
Bse8I	GATNNNNATC	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	12, 189
BseDI	CCNNGG	7 cut(s)	86, 92, 93, 270, 317, 399, 479
BseGI	GGATG	2 cut(s)	184, 395
BseJI	GATNNNNATC	1 cut(s)	394
BseLI	CCNNNNNNNGG	3 cut(s)	58, 92, 405
BseMI	GCAATG	2 cut(s)	436, 478
BseNI	ACTGG	2 cut(s)	200, 410
BseXI	GCAGC	2 cut(s)	236, 384
BshFI	GGCC	4 cut(s)	10, 91, 174, 187
BsiHKAI	GWGCWC	2 cut(s)	226, 438
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	5 cut(s)	93, 171, 176, 399, 495
BslFI	GGGAC	2 cut(s)	74, 416
BslI	CCNNNNNNNGG	3 cut(s)	58, 92, 405
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	2 cut(s)	74, 416
BsnI	GGCC	4 cut(s)	10, 91, 174, 187
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	226, 438
BspACI	CCGC	5 cut(s)	129, 241, 291, 333, 348
BspANI	GGCC	4 cut(s)	10, 91, 174, 187
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	29
BspMI	ACCTGC	1 cut(s)	18
BsrBI	CCGCTC	1 cut(s)	243
BsrDI	GCAATG	2 cut(s)	436, 478
BsrFI	RCCGGY	2 cut(s)	170, 494
BsrI	ACTGG	2 cut(s)	200, 410
BssAI	RCCGGY	2 cut(s)	170, 494
BssECI	CCNNGG	7 cut(s)	86, 92, 93, 270, 317, 399, 479
BssT1I	CCWWGG	4 cut(s)	86, 270, 317, 479
Bst2UI	CCWGG	2 cut(s)	12, 189
Bst4CI	ACNGT	2 cut(s)	218, 308
Bst6I	CTCTTC	1 cut(s)	127
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	238, 448
BstDEI	CTNAG	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	184, 395
BstMAI	GTCTC	1 cut(s)	507
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 126, 246, 249, 297, 354, 381
BstNI	CCWGG	2 cut(s)	12, 189
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	6 cut(s)	10, 91, 92, 174, 187, 398
BstSFI	CTRYAG	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	236, 384
BstXI	CCANNNNNNTGG	2 cut(s)	18, 77
BsuRI	GGCC	4 cut(s)	10, 91, 174, 187
BtsCI	GGATG	2 cut(s)	184, 395
BtsI	GCAGTG	2 cut(s)	358, 364
BtsIMutI	CAGTG	2 cut(s)	358, 364
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	238, 448
Cfr10I	RCCGGY	2 cut(s)	170, 494
Cfr13I	GGNCC	2 cut(s)	90, 173
Cfr9I	CCCGGG	1 cut(s)	92
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	199, 492
CviAII	CATG	3 cut(s)	33, 66, 313
CviQI	GTAC	2 cut(s)	199, 492
DdeI	CTNAG	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	4 cut(s)	86, 270, 317, 479
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	10, 187
EcoT14I	CCWWGG	4 cut(s)	86, 270, 317, 479
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	4 cut(s)	86, 270, 317, 479
FaeI	CATG	3 cut(s)	36, 69, 316
FaiI	YATR	8 cut(s)	34, 67, 228, 314, 508, 510, 516, 529
FaqI	GGGAC	2 cut(s)	74, 416
FatI	CATG	3 cut(s)	32, 65, 312
Fnu4HI	GCNGC	4 cut(s)	241, 250, 349, 373
FokI	GGATG	2 cut(s)	191, 402
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	4 cut(s)	241, 250, 349, 373
FspBI	CTAG	3 cut(s)	285, 318, 489
GluI	GCNGC	4 cut(s)	241, 250, 349, 373
GsuI	CTGGAG	1 cut(s)	229
HaeIII	GGCC	4 cut(s)	10, 91, 174, 187
HapII	CCGG	5 cut(s)	93, 171, 176, 399, 495
HgaI	GACGC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	36, 69, 316
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	3 cut(s)	62, 278, 485
HpaII	CCGG	5 cut(s)	93, 171, 176, 399, 495
HphI	GGTGA	3 cut(s)	119, 203, 320
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	467
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	1 cut(s)	165
HpyCH4III	ACNGT	2 cut(s)	218, 308
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	6 cut(s)	27, 36, 204, 414, 429, 471
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 126, 246, 249, 297, 354, 381
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	36, 69, 316
LmnI	GCTCC	3 cut(s)	221, 248, 481
Lsp1109I	GCAGC	2 cut(s)	236, 384
LweI	GCATC	1 cut(s)	458
MaeI	CTAG	3 cut(s)	285, 318, 489
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	3 cut(s)	191, 308, 321
MbiI	CCGCTC	1 cut(s)	243
MboII	GAAGA	1 cut(s)	144
MhlI	GDGCHC	2 cut(s)	226, 438
MluCI	AATT	3 cut(s)	110, 511, 520
MlyI	GAGTC	2 cut(s)	56, 287
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	7 cut(s)	51, 66, 95, 128, 134, 292, 323
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	5 cut(s)	93, 171, 176, 399, 495
MspR9I	CCNGG	6 cut(s)	12, 93, 94, 176, 189, 400
MvaI	CCWGG	2 cut(s)	12, 189
MwoI	GCNNNNNNNGC	7 cut(s)	33, 126, 246, 249, 297, 354, 381
NciI	CCSGG	4 cut(s)	93, 94, 176, 400
NlaIII	CATG	3 cut(s)	36, 69, 316
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	3 cut(s)	191, 308, 321
NspI	RCATGY	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	4 cut(s)	242, 251, 350, 374
PleI	GAGTC	2 cut(s)	56, 286
PpsI	GAGTC	2 cut(s)	56, 286
Psp124BI	GAGCTC	1 cut(s)	226
Psp1406I	AACGTT	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	10, 187
PspGI	CCWGG	2 cut(s)	10, 187
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	90, 173
PstI	CTGCAG	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	249
RsaI	GTAC	2 cut(s)	200, 493
RsaNI	GTAC	2 cut(s)	199, 492
SacI	GAGCTC	1 cut(s)	226
SatI	GCNGC	4 cut(s)	241, 250, 349, 373
Sau96I	GGNCC	2 cut(s)	90, 173
SchI	GAGTC	2 cut(s)	56, 287
ScrFI	CCNGG	6 cut(s)	12, 93, 94, 176, 189, 400
SduI	GDGCHC	2 cut(s)	226, 438
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	1 cut(s)	25
SmaI	CCCGGG	1 cut(s)	94
Sse9I	AATT	3 cut(s)	110, 511, 520
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	5 cut(s)	129, 241, 291, 333, 348
SspMI	CTAG	3 cut(s)	285, 318, 489
SstI	GAGCTC	1 cut(s)	226
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	6 cut(s)	10, 91, 92, 174, 187, 398
StyI	CCWWGG	4 cut(s)	86, 270, 317, 479
TaaI	ACNGT	2 cut(s)	218, 308
TaiI	ACGT	1 cut(s)	210
TasI	AATT	3 cut(s)	110, 511, 520
TauI	GCSGC	2 cut(s)	243, 351
TfiI	GAWTC	1 cut(s)	485
TscAI	CASTG	2 cut(s)	358, 364
TseFI	GTSAC	3 cut(s)	191, 308, 321
TseI	GCWGC	2 cut(s)	249, 372
Tsp45I	GTSAC	3 cut(s)	191, 308, 321
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	470
TspMI	CCCGGG	1 cut(s)	92
TspRI	CASTG	2 cut(s)	358, 364
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	1 cut(s)	316
XmaI	CCCGGG	1 cut(s)	92
XmaJI	CCTAGG	1 cut(s)	317
XspI	CTAG	3 cut(s)	285, 318, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.