Rmu_co8335535.1_g000001

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8335535.1
OG0006028
Physical Location & Seq
Reverse (-)
2 .. 338
337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8335535.1_g000001.1.cds

Sequence Viewer

Length: 337 bp
atgaataggccaggagattggaactgcaggtcatgcaaccatctcaacttccaaaggagggactcatgccagaggtgtggggaaccaaggcccggggagagaggtggtgaatttggaagctttggtggcggaagaggtggaggtgttggtggttcgtttgggttcactaccggcccggatgtcaggcctggtgactggtactgcaacgttggaaactgtggagctcataactttgccagccgctccagctgcttcaagtgtggtgcgtccaaggacgagtcctctagtggcggtggtggctttgacggtgacatgcctaggtcacttagaggcggtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

112

Amino Acids

11.71

Weight (kDa)

8.51

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 243
AciI CCGC 4 cut(s) 129, 241, 291, 333
AclI AACGTT 1 cut(s) 207
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 2 cut(s) 58, 92
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 2 cut(s) 10, 187
AluBI AGCT 3 cut(s) 120, 224, 249
AluI AGCT 3 cut(s) 120, 224, 249
Alw21I GWGCWC 1 cut(s) 226
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 4 cut(s) 8, 89, 172, 185
ApeKI GCWGC 1 cut(s) 249
ApoI RAATTY 1 cut(s) 110
AspA2I CCTAGG 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 90, 173
AsuC2I CCSGG 3 cut(s) 93, 94, 176
AsuHPI GGTGA 3 cut(s) 119, 203, 320
AvaI CYCGRG 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 317
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 1 cut(s) 236
BccI CCATC 1 cut(s) 48
BciT130I CCWGG 2 cut(s) 12, 189
BcnI CCSGG 3 cut(s) 93, 94, 176
BfaI CTAG 2 cut(s) 285, 318
BfmI CTRYAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 2 cut(s) 241, 250
BlnI CCTAGG 1 cut(s) 317
BlsI GCNGC 2 cut(s) 242, 251
Bme1390I CCNGG 5 cut(s) 12, 93, 94, 176, 189
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 2 cut(s) 90, 173
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 5 cut(s) 12, 93, 94, 176, 189
BpmI CTGGAG 1 cut(s) 229
BpuMI CCSGG 3 cut(s) 93, 94, 176
BsaJI CCNNGG 5 cut(s) 86, 92, 93, 270, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 92
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 2 cut(s) 12, 189
BseDI CCNNGG 5 cut(s) 86, 92, 93, 270, 317
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 58, 92
BseNI ACTGG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 236
BshFI GGCC 4 cut(s) 10, 91, 174, 187
BsiHKAI GWGCWC 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 3 cut(s) 93, 171, 176
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 58, 92
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 4 cut(s) 10, 91, 174, 187
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 226
BspACI CCGC 4 cut(s) 129, 241, 291, 333
BspANI GGCC 4 cut(s) 10, 91, 174, 187
BspLI GGNNCC 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 5 cut(s) 86, 92, 93, 270, 317
BssT1I CCWWGG 3 cut(s) 86, 270, 317
Bst2UI CCWGG 2 cut(s) 12, 189
Bst4CI ACNGT 2 cut(s) 218, 308
Bst6I CTCTTC 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 326
BstF5I GGATG 1 cut(s) 184
BstMWI GCNNNNNNNGC 5 cut(s) 33, 126, 246, 249, 297
BstNI CCWGG 2 cut(s) 12, 189
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 5 cut(s) 10, 91, 92, 174, 187
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 236
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 4 cut(s) 10, 91, 174, 187
BtsCI GGATG 1 cut(s) 184
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 90, 173
Cfr9I CCCGGG 1 cut(s) 92
CseI GACGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 199
CviAII CATG 3 cut(s) 33, 66, 313
CviJI RGCY 9 cut(s) 10, 91, 120, 174, 187, 224, 240, 249, 300
CviKI_1 RGCY 9 cut(s) 10, 91, 120, 174, 187, 224, 240, 249, 300
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
EciI GGCGGA 1 cut(s) 144
Ecl136II GAGCTC 1 cut(s) 224
Eco130I CCWWGG 3 cut(s) 86, 270, 317
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 10, 187
EcoT14I CCWWGG 3 cut(s) 86, 270, 317
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 3 cut(s) 86, 270, 317
FaeI CATG 3 cut(s) 36, 69, 316
FaiI YATR 4 cut(s) 34, 67, 228, 314
FaqI GGGAC 1 cut(s) 74
FatI CATG 3 cut(s) 32, 65, 312
Fnu4HI GCNGC 2 cut(s) 241, 250
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 2 cut(s) 241, 250
FspBI CTAG 2 cut(s) 285, 318
GluI GCNGC 2 cut(s) 241, 250
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 4 cut(s) 10, 91, 174, 187
HapII CCGG 3 cut(s) 93, 171, 176
HgaI GACGC 1 cut(s) 255
Hin1II CATG 3 cut(s) 36, 69, 316
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 2 cut(s) 62, 278
HpaII CCGG 3 cut(s) 93, 171, 176
HphI GGTGA 3 cut(s) 119, 203, 320
Hpy166II GTNNAC 1 cut(s) 165
Hpy8I GTNNAC 1 cut(s) 165
HpyCH4III ACNGT 2 cut(s) 218, 308
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 27, 36, 204
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 126, 246, 249, 297
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 3 cut(s) 36, 69, 316
LmnI GCTCC 2 cut(s) 221, 248
Lsp1109I GCAGC 1 cut(s) 236
MaeI CTAG 2 cut(s) 285, 318
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 191, 308, 321
MbiI CCGCTC 1 cut(s) 243
MboII GAAGA 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 1 cut(s) 110
MlyI GAGTC 2 cut(s) 56, 287
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 7 cut(s) 51, 66, 95, 128, 134, 292, 323
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 3 cut(s) 93, 171, 176
MspR9I CCNGG 5 cut(s) 12, 93, 94, 176, 189
MvaI CCWGG 2 cut(s) 12, 189
MwoI GCNNNNNNNGC 5 cut(s) 33, 126, 246, 249, 297
NciI CCSGG 3 cut(s) 93, 94, 176
NlaIII CATG 3 cut(s) 36, 69, 316
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 3 cut(s) 191, 308, 321
NspI RCATGY 1 cut(s) 316
PceI AGGCCT 1 cut(s) 187
PkrI GCNGC 2 cut(s) 242, 251
PleI GAGTC 2 cut(s) 56, 286
PpsI GAGTC 2 cut(s) 56, 286
Psp124BI GAGCTC 1 cut(s) 226
Psp1406I AACGTT 1 cut(s) 207
Psp6I CCWGG 2 cut(s) 10, 187
PspGI CCWGG 2 cut(s) 10, 187
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 2 cut(s) 90, 173
PstI CTGCAG 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 249
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SacI GAGCTC 1 cut(s) 226
SatI GCNGC 2 cut(s) 241, 250
Sau96I GGNCC 2 cut(s) 90, 173
SchI GAGTC 2 cut(s) 56, 287
ScrFI CCNGG 5 cut(s) 12, 93, 94, 176, 189
SduI GDGCHC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 94
Sse9I AATT 1 cut(s) 110
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 4 cut(s) 129, 241, 291, 333
SspMI CTAG 2 cut(s) 285, 318
SstI GAGCTC 1 cut(s) 226
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 5 cut(s) 10, 91, 92, 174, 187
StyI CCWWGG 3 cut(s) 86, 270, 317
TaaI ACNGT 2 cut(s) 218, 308
TaiI ACGT 1 cut(s) 210
TasI AATT 1 cut(s) 110
TauI GCSGC 1 cut(s) 243
TseFI GTSAC 3 cut(s) 191, 308, 321
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 3 cut(s) 191, 308, 321
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 92
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 316
XmaI CCCGGG 1 cut(s) 92
XmaJI CCTAGG 1 cut(s) 317
XspI CTAG 2 cut(s) 285, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.