RLG00000011516

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006028
Physical Location & Seq
Forward (+)
10143567 .. 10144200
634 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011516

Sequence Viewer

Length: 537 bp
ATGAATAGGCCAGGAGATTGGAACTGCAGGTCATGCAACCATCTCAACTTCCAAAGGAGGGACTCATGCCAGAGATGTGGGGAGCCAAGGCCCGGGGAGAGAGGTGGTGAATTTGGAAGCTTTGGTGGCGGAAGAGGTGGAGGTGTTGGTGGTTCGTTTGGGTTCACTACCGGCCCGGATGTCAGGCCTGGTGACTGGTACTGCAACGTGGGAAACTGTGGAGCTCATAACTTTGCCAGCCGCTCCAGCTGCTTCAAGTGTGGTGCGTCCAAGGACGAGTCCTCTAGTGGTGGTGGTGGCTTTGACGGTGAGATGCCTAGGTCACTTAGAGGCGGTTTTGGATTTGGCGGCAGTGGCAGTGGCAGTGGTAGTGGTGGCAGCTCTGGTCGCTCTGGATGGAAATCCGGGGACTGGATTTGCACAAGGTTAGGGTGCAATGAGCACAACTTCGCAAGCAGGACGGAATGTTTCAGATGCAATGCTCCAAGGGAATCTAGTACCGGCAAGTCTCCATATAATTATATCAATTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

179

Amino Acids

18.66

Weight (kDa)

8.79

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 134 - 164 1.9e-08 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 243
AciI CCGC 4 cut(s) 129, 241, 333, 348
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 2 cut(s) 200, 499
AfiI CCNNNNNNNGG 3 cut(s) 58, 92, 411
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 2 cut(s) 10, 187
AluBI AGCT 4 cut(s) 120, 224, 249, 381
AluI AGCT 4 cut(s) 120, 224, 249, 381
Alw21I GWGCWC 2 cut(s) 226, 444
Alw26I GTCTC 1 cut(s) 513
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 4 cut(s) 8, 89, 172, 185
ApeKI GCWGC 2 cut(s) 249, 378
ApoI RAATTY 1 cut(s) 110
AspA2I CCTAGG 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 90, 173
AsuC2I CCSGG 4 cut(s) 93, 94, 176, 406
AsuHPI GGTGA 3 cut(s) 119, 203, 320
AvaI CYCGRG 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 317
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 2 cut(s) 226, 444
BbvI GCAGC 2 cut(s) 236, 390
BccI CCATC 2 cut(s) 48, 390
BciT130I CCWGG 2 cut(s) 12, 189
BcnI CCSGG 4 cut(s) 93, 94, 176, 406
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 3 cut(s) 285, 318, 495
BfmI CTRYAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 4 cut(s) 241, 250, 349, 379
BlnI CCTAGG 1 cut(s) 317
BlsI GCNGC 4 cut(s) 242, 251, 350, 380
Bme1390I CCNGG 6 cut(s) 12, 93, 94, 176, 189, 406
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 2 cut(s) 90, 173
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 6 cut(s) 12, 93, 94, 176, 189, 406
BmsI GCATC 2 cut(s) 303, 464
BpmI CTGGAG 1 cut(s) 229
BpuMI CCSGG 4 cut(s) 93, 94, 176, 406
BsaBI GATNNNNATC 1 cut(s) 400
BsaJI CCNNGG 7 cut(s) 86, 92, 93, 270, 317, 405, 485
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 92, 411
Bse118I RCCGGY 2 cut(s) 170, 500
Bse1I ACTGG 2 cut(s) 200, 416
Bse3DI GCAATG 2 cut(s) 442, 484
Bse8I GATNNNNATC 1 cut(s) 400
BseBI CCWGG 2 cut(s) 12, 189
BseDI CCNNGG 7 cut(s) 86, 92, 93, 270, 317, 405, 485
BseGI GGATG 2 cut(s) 184, 401
BseJI GATNNNNATC 1 cut(s) 400
BseLI CCNNNNNNNGG 3 cut(s) 58, 92, 411
BseMI GCAATG 2 cut(s) 442, 484
BseNI ACTGG 2 cut(s) 200, 416
BseXI GCAGC 2 cut(s) 236, 390
BshFI GGCC 4 cut(s) 10, 91, 174, 187
BsiHKAI GWGCWC 2 cut(s) 226, 444
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 5 cut(s) 93, 171, 176, 405, 501
BslFI GGGAC 2 cut(s) 74, 422
BslI CCNNNNNNNGG 3 cut(s) 58, 92, 411
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 2 cut(s) 74, 422
BsnI GGCC 4 cut(s) 10, 91, 174, 187
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 226, 444
BspACI CCGC 4 cut(s) 129, 241, 333, 348
BspANI GGCC 4 cut(s) 10, 91, 174, 187
BspLI GGNNCC 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 2 cut(s) 442, 484
BsrFI RCCGGY 2 cut(s) 170, 500
BsrI ACTGG 2 cut(s) 200, 416
BssAI RCCGGY 2 cut(s) 170, 500
BssECI CCNNGG 7 cut(s) 86, 92, 93, 270, 317, 405, 485
BssT1I CCWWGG 4 cut(s) 86, 270, 317, 485
Bst2UI CCWGG 2 cut(s) 12, 189
Bst4CI ACNGT 2 cut(s) 218, 308
Bst6I CTCTTC 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 238, 454
BstDEI CTNAG 1 cut(s) 326
BstF5I GGATG 2 cut(s) 184, 401
BstMAI GTCTC 1 cut(s) 513
BstMWI GCNNNNNNNGC 6 cut(s) 33, 126, 246, 249, 354, 387
BstNI CCWGG 2 cut(s) 12, 189
BstSCI CCNGG 6 cut(s) 10, 91, 92, 174, 187, 404
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 236, 390
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 4 cut(s) 10, 91, 174, 187
BtsCI GGATG 2 cut(s) 184, 401
BtsI GCAGTG 3 cut(s) 358, 364, 370
BtsIMutI CAGTG 3 cut(s) 358, 364, 370
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 238, 454
Cfr10I RCCGGY 2 cut(s) 170, 500
Cfr13I GGNCC 2 cut(s) 90, 173
Cfr9I CCCGGG 1 cut(s) 92
CseI GACGC 1 cut(s) 255
Csp6I GTAC 2 cut(s) 199, 498
CviAII CATG 2 cut(s) 33, 66
CviQI GTAC 2 cut(s) 199, 498
DdeI CTNAG 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
EciI GGCGGA 1 cut(s) 144
Ecl136II GAGCTC 1 cut(s) 224
Eco130I CCWWGG 4 cut(s) 86, 270, 317, 485
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 10, 187
EcoT14I CCWWGG 4 cut(s) 86, 270, 317, 485
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 4 cut(s) 86, 270, 317, 485
FaeI CATG 2 cut(s) 36, 69
FaiI YATR 7 cut(s) 34, 67, 228, 514, 516, 522, 535
FaqI GGGAC 2 cut(s) 74, 422
FatI CATG 2 cut(s) 32, 65
Fnu4HI GCNGC 4 cut(s) 241, 250, 349, 379
FokI GGATG 2 cut(s) 191, 408
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 4 cut(s) 241, 250, 349, 379
FspBI CTAG 3 cut(s) 285, 318, 495
GluI GCNGC 4 cut(s) 241, 250, 349, 379
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 4 cut(s) 10, 91, 174, 187
HapII CCGG 5 cut(s) 93, 171, 176, 405, 501
HgaI GACGC 1 cut(s) 255
Hin1II CATG 2 cut(s) 36, 69
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 3 cut(s) 62, 278, 491
HpaII CCGG 5 cut(s) 93, 171, 176, 405, 501
HphI GGTGA 3 cut(s) 119, 203, 320
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 1 cut(s) 473
Hpy188III TCNNGA 1 cut(s) 393
Hpy8I GTNNAC 1 cut(s) 165
HpyCH4III ACNGT 2 cut(s) 218, 308
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 6 cut(s) 27, 36, 204, 420, 435, 477
HpyF10VI GCNNNNNNNGC 6 cut(s) 33, 126, 246, 249, 354, 387
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 2 cut(s) 36, 69
LmnI GCTCC 4 cut(s) 82, 221, 248, 487
Lsp1109I GCAGC 2 cut(s) 236, 390
LweI GCATC 2 cut(s) 303, 464
MaeI CTAG 3 cut(s) 285, 318, 495
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 2 cut(s) 191, 321
MbiI CCGCTC 1 cut(s) 243
MboII GAAGA 1 cut(s) 144
MhlI GDGCHC 2 cut(s) 226, 444
MluCI AATT 3 cut(s) 110, 517, 526
MlyI GAGTC 2 cut(s) 56, 287
MnlI CCTC 6 cut(s) 51, 95, 128, 134, 292, 323
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 5 cut(s) 93, 171, 176, 405, 501
MspR9I CCNGG 6 cut(s) 12, 93, 94, 176, 189, 406
MvaI CCWGG 2 cut(s) 12, 189
MwoI GCNNNNNNNGC 6 cut(s) 33, 126, 246, 249, 354, 387
NciI CCSGG 4 cut(s) 93, 94, 176, 406
NlaIII CATG 2 cut(s) 36, 69
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 2 cut(s) 191, 321
PceI AGGCCT 1 cut(s) 187
PfeI GAWTC 1 cut(s) 491
PkrI GCNGC 4 cut(s) 242, 251, 350, 380
PleI GAGTC 2 cut(s) 56, 286
PpsI GAGTC 2 cut(s) 56, 286
Psp124BI GAGCTC 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 10, 187
PspGI CCWGG 2 cut(s) 10, 187
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 2 cut(s) 90, 173
PstI CTGCAG 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 249
RsaI GTAC 2 cut(s) 200, 499
RsaNI GTAC 2 cut(s) 199, 498
SacI GAGCTC 1 cut(s) 226
SatI GCNGC 4 cut(s) 241, 250, 349, 379
Sau96I GGNCC 2 cut(s) 90, 173
SchI GAGTC 2 cut(s) 56, 287
ScrFI CCNGG 6 cut(s) 12, 93, 94, 176, 189, 406
SduI GDGCHC 2 cut(s) 226, 444
SfaNI GCATC 2 cut(s) 303, 464
SfcI CTRYAG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 94
Sse9I AATT 3 cut(s) 110, 517, 526
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 4 cut(s) 129, 241, 333, 348
SspMI CTAG 3 cut(s) 285, 318, 495
SstI GAGCTC 1 cut(s) 226
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 6 cut(s) 10, 91, 92, 174, 187, 404
StyI CCWWGG 4 cut(s) 86, 270, 317, 485
TaaI ACNGT 2 cut(s) 218, 308
TaiI ACGT 1 cut(s) 210
TasI AATT 3 cut(s) 110, 517, 526
TauI GCSGC 2 cut(s) 243, 351
TfiI GAWTC 1 cut(s) 491
TscAI CASTG 3 cut(s) 358, 364, 370
TseFI GTSAC 2 cut(s) 191, 321
TseI GCWGC 2 cut(s) 249, 378
Tsp45I GTSAC 2 cut(s) 191, 321
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 476
TspMI CCCGGG 1 cut(s) 92
TspRI CASTG 3 cut(s) 358, 364, 370
XapI RAATTY 1 cut(s) 110
XmaI CCCGGG 1 cut(s) 92
XmaJI CCTAGG 1 cut(s) 317
XspI CTAG 3 cut(s) 285, 318, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.